##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139252_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9772196 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.296809130721485 33.0 33.0 33.0 33.0 33.0 2 32.337712219443816 33.0 33.0 33.0 33.0 33.0 3 32.363199325924285 33.0 33.0 33.0 33.0 33.0 4 36.224510130578636 37.0 37.0 37.0 33.0 37.0 5 36.276846882727284 37.0 37.0 37.0 33.0 37.0 6 36.26027680983885 37.0 37.0 37.0 33.0 37.0 7 36.228793507621006 37.0 37.0 37.0 33.0 37.0 8 36.213217786462735 37.0 37.0 37.0 33.0 37.0 9 36.27935604238802 37.0 37.0 37.0 33.0 37.0 10-11 36.19827135067696 37.0 37.0 37.0 33.0 37.0 12-13 36.15834332426407 37.0 37.0 37.0 33.0 37.0 14-15 37.89501530669258 40.0 37.0 40.0 33.0 40.0 16-17 37.82311043495239 40.0 37.0 40.0 33.0 40.0 18-19 37.79105182704072 40.0 37.0 40.0 33.0 40.0 20-21 37.80177761279667 40.0 37.0 40.0 33.0 40.0 22-23 37.806413334889676 40.0 37.0 40.0 33.0 40.0 24-25 37.80254528192907 40.0 37.0 40.0 33.0 40.0 26-27 37.66622213180581 40.0 37.0 40.0 33.0 40.0 28-29 37.59437410866061 40.0 37.0 40.0 33.0 40.0 30-31 37.46702166594899 40.0 37.0 40.0 33.0 40.0 32-33 37.41480581838681 40.0 37.0 40.0 33.0 40.0 34-35 37.38467612436733 40.0 37.0 40.0 33.0 40.0 36-37 37.32752014119149 40.0 37.0 40.0 33.0 40.0 38-39 37.271301185101585 40.0 37.0 40.0 33.0 40.0 40-41 37.24783840967946 40.0 37.0 40.0 33.0 40.0 42-43 37.16086772135492 40.0 37.0 40.0 33.0 40.0 44-45 37.098245923823754 40.0 37.0 40.0 33.0 40.0 46-47 37.05000548638659 40.0 37.0 40.0 33.0 40.0 48-49 37.03945787947438 40.0 37.0 40.0 33.0 40.0 50-51 36.95674409932286 37.0 37.0 40.0 33.0 40.0 52-53 36.84243063733758 37.0 37.0 40.0 33.0 40.0 54-55 36.65080581463095 37.0 37.0 40.0 33.0 40.0 56-57 36.54479615797157 37.0 37.0 40.0 33.0 40.0 58-59 36.40742044289645 37.0 37.0 40.0 33.0 40.0 60-61 36.264626913654396 37.0 37.0 40.0 33.0 40.0 62-63 36.09504639060235 37.0 37.0 40.0 33.0 40.0 64-65 35.9212512799971 37.0 33.0 40.0 33.0 40.0 66-67 35.72396995702276 37.0 33.0 40.0 30.0 40.0 68-69 35.50811665279754 37.0 33.0 38.5 27.0 40.0 70-71 35.274628040324245 37.0 33.0 37.0 27.0 40.0 72-73 35.05707696989627 37.0 33.0 37.0 27.0 40.0 74-75 34.85914707518487 37.0 33.0 37.0 27.0 40.0 76-77 32.900934065103925 33.0 33.0 37.0 27.0 37.0 78-79 34.31605330132922 37.0 33.0 37.0 27.0 37.0 80-81 34.24522838412051 37.0 33.0 37.0 27.0 37.0 82-83 33.91604755987421 37.0 33.0 37.0 27.0 37.0 84-85 34.01988121695162 37.0 33.0 37.0 27.0 37.0 86-87 33.95982696695215 37.0 33.0 37.0 27.0 37.0 88-89 33.837855508617935 37.0 33.0 37.0 27.0 37.0 90-91 33.49204167681937 37.0 33.0 37.0 27.0 37.0 92-93 33.64354742919085 33.0 33.0 37.0 27.0 37.0 94-95 33.547483703931306 33.0 33.0 37.0 27.0 37.0 96-97 33.5810327476662 33.0 33.0 37.0 27.0 37.0 98-99 33.73852328668697 33.0 33.0 37.0 27.0 37.0 100 33.78185425712763 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 16.0 20 131.0 21 635.0 22 2470.0 23 7101.0 24 16061.0 25 31342.0 26 53912.0 27 85303.0 28 123629.0 29 171247.0 30 227770.0 31 296362.0 32 385111.0 33 500415.0 34 658527.0 35 900961.0 36 1418286.0 37 2615962.0 38 2226155.0 39 50797.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5947346942284 20.39150667874447 14.030531110919183 23.983227516107945 2 14.581502458608075 21.48408607440948 41.62321345171546 22.31119801526699 3 17.89591612775675 26.6985946659277 30.816492014691477 24.588997191624074 4 12.105160395882358 18.453027344109756 39.26003940158384 30.181772858424043 5 13.00162215330106 38.12521770950972 35.88289674091678 12.990263396272445 6 29.2915635339283 38.57446166654864 18.941801822231156 13.1921729772919 7 25.741972428715105 33.04721886462367 23.59080804355541 17.620000663105817 8 24.01843966289665 37.173149208223 21.448321339441 17.360089789439346 9 25.530241887412963 16.523500205839202 21.207833534976956 36.738424371770876 10-11 23.81331577960382 26.935307633288403 29.345012396511322 19.906364190596456 12-13 24.734900069217012 24.61018357858096 29.312422509487153 21.34249384271488 14-15 21.88592643365606 25.888797117690782 26.954891107520996 25.27038534113217 16-17 21.391348474795223 29.00734901346637 27.646206645875708 21.9550958658627 18-19 21.466577215602307 28.027113864683024 29.40910108638836 21.097207833326305 20-21 22.21885483105023 27.269815375828742 29.3319737782847 21.17935601483633 22-23 21.90209618870176 27.32464353370288 29.16805878164894 21.605201495946417 24-25 21.746403133522175 27.442743698046097 29.272842751508616 21.538010416923118 26-27 21.700749928009696 27.63443037134708 29.170302023388352 21.494517677254873 28-29 21.638280568181713 27.620843849628567 29.212528746361972 21.52834683582775 30-31 21.83162797211335 27.528441567535307 29.184373687891835 21.45555677245951 32-33 21.701489351463994 27.70284512069081 29.07231495796149 21.523350569883704 34-35 21.906675714409594 27.629160018943754 29.039718058527047 21.424446208119605 36-37 21.721121756791405 27.66133164504256 28.97409988235901 21.643446715807027 38-39 21.578776482047672 27.693681355847538 29.070867510151583 21.656674651953203 40-41 21.83088127655069 27.590557258892513 28.973989267485557 21.604572197071246 42-43 21.80847720959277 27.653125670174784 28.770224561330682 21.768172558901764 44-45 21.815066518469106 27.875657616060217 28.52459536894301 21.784680496527667 46-47 21.970635263825777 27.76950531354342 28.198079435941985 22.06177998668882 48-49 21.863937195963697 27.92448152671802 28.191485567819374 22.02009570949891 50-51 21.83530385035379 28.045660283798668 28.09432670037176 22.02470916547578 52-53 21.977239610807892 27.998292274697118 28.03968087965941 21.98478723483558 54-55 22.01213220123584 27.884250235160916 27.988455390709195 22.11516217289405 56-57 21.996845281054203 28.02361226323352 27.86144134709233 22.118101108619946 58-59 21.916604471906844 28.07525224301579 27.974463688509378 22.033679596567993 60-61 22.069444189627262 28.107760853212604 27.851289006434094 21.97150595072604 62-63 21.9392997968694 28.213082293498115 27.837393100387487 22.010224809245003 64-65 21.92513368983957 28.155834648574 27.78961542190683 22.129416239679593 66-67 22.01464178480272 28.20118837716282 27.61607159811464 22.16809823991982 68-69 21.991263670602397 28.144888662932544 27.70588664977838 22.15796101668668 70-71 22.021580289671803 27.942889026775415 27.749587716669932 22.285942966882853 72-73 22.053552428133703 27.98498162883551 27.650839240033516 22.310626702997276 74-75 21.97036196831013 28.097037602365237 27.65679304902059 22.275807380304045 76-77 22.184947063224612 27.992288971373764 27.526262242879817 22.296501722521807 78-79 22.07569522174456 28.068553387102014 27.548445640836356 22.30730575031707 80-81 22.116164587004857 28.0410495691171 27.51737972818582 22.32540611569222 82-83 22.161427687074404 28.042082752324553 27.5579497633236 22.23853979727744 84-85 22.187483787121213 28.078946142815138 27.57593219827015 22.1576378717935 86-87 22.067368659167062 28.068583412703408 27.655784472944895 22.20826345518464 88-89 22.09937157847896 28.09711686725792 27.62493402738252 22.17857752688061 90-91 22.213105936635742 28.127151993500256 27.616117758985382 22.043624310878624 92-93 22.171627072587516 28.087509328252143 27.668644791395913 22.07221880776443 94-95 21.996943010448046 28.116599226182625 27.714889496369892 22.171568266999437 96-97 22.050394576051232 28.223736711161646 27.857659029232767 21.86820968355436 98-99 23.089503832195255 30.173809570548787 28.071436635294734 18.665249961961223 100 22.048494022314337 31.182130597212854 21.980608832273692 24.788766548199117 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3784.0 1 3142.5 2 3661.5 3 5084.0 4 6659.5 5 10576.0 6 13999.5 7 16422.0 8 17940.5 9 17372.5 10 15526.0 11 13783.0 12 14816.5 13 19283.0 14 29524.5 15 44062.5 16 55849.5 17 62203.5 18 63593.5 19 60944.5 20 56182.0 21 51601.5 22 49334.0 23 51659.5 24 59839.5 25 73863.0 26 92222.5 27 111524.5 28 129414.5 29 147959.5 30 166754.5 31 186106.0 32 207809.5 33 229723.5 34 251242.5 35 272319.5 36 294347.5 37 314274.0 38 328885.5 39 341206.0 40 354823.5 41 365330.5 42 372340.0 43 380514.0 44 386347.5 45 390857.0 46 397145.0 47 402238.0 48 402504.5 49 398533.0 50 392520.5 51 381310.0 52 363323.5 53 341480.0 54 317674.5 55 292591.0 56 267465.0 57 241272.5 58 214038.0 59 184554.5 60 152303.5 61 122441.5 62 95880.5 63 73136.0 64 54330.5 65 39552.0 66 28949.5 67 21886.0 68 16655.5 69 11980.5 70 8488.5 71 5927.0 72 4028.0 73 2681.0 74 1810.5 75 1201.0 76 788.0 77 534.0 78 368.0 79 261.0 80 185.0 81 129.0 82 96.0 83 68.0 84 46.5 85 33.5 86 26.0 87 20.0 88 14.5 89 10.5 90 7.0 91 4.5 92 2.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 5.116557220096691E-5 10-11 0.0030034190881967574 12-13 3.2745966208618817E-4 14-15 0.003162032362019755 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 217.0 20-21 828.0 22-23 1654.0 24-25 3199.0 26-27 5203.0 28-29 9406.0 30-31 20022.0 32-33 25514.0 34-35 35677.0 36-37 48261.0 38-39 54467.0 40-41 59617.0 42-43 70760.0 44-45 82942.0 46-47 82165.0 48-49 73598.0 50-51 62223.0 52-53 58553.0 54-55 64037.0 56-57 69035.0 58-59 70021.0 60-61 69647.0 62-63 71812.0 64-65 75842.0 66-67 81700.0 68-69 78713.0 70-71 78632.0 72-73 74992.0 74-75 78847.0 76-77 74224.0 78-79 85713.0 80-81 87644.0 82-83 83756.0 84-85 86011.0 86-87 92022.0 88-89 101843.0 90-91 105906.0 92-93 115217.0 94-95 143482.0 96-97 349013.0 98-99 605557.0 100-101 6334224.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.09740443099817 #Duplication Level Percentage of deduplicated Percentage of total 1 89.44595355931621 76.11618484753411 2 7.439198092371148 12.661128974176354 3 1.7889731546929442 4.567109161833124 4 0.6375875707842207 2.1702818948481006 5 0.29255526149370265 1.2447846702873018 6 0.14162432962575863 0.7231117713259307 7 0.07720361915454743 0.45988793219118956 8 0.04431640608962879 0.3016968905549993 9 0.032236797814146075 0.24689410390356356 >10 0.09809321557246599 1.2873541931679002 >50 0.0017499206885596486 0.10035137812798628 >100 3.945448277045723E-4 0.0550054202774323 >500 9.460741273893575E-5 0.0478702218360648 >1k 1.8920156199665536E-5 0.01833853993599458 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.069934332058014E-5 0.0 0.0 0.0 3 0.0 3.069934332058014E-5 0.0 1.0233114440193382E-5 0.0 4 0.0 7.163180108135367E-5 0.0 2.0466228880386764E-5 0.0 5 1.0233114440193382E-5 7.163180108135367E-5 0.0 2.0466228880386764E-5 0.0 6 4.093245776077353E-5 7.163180108135367E-5 0.0 2.0466228880386764E-5 0.0 7 4.093245776077353E-5 7.163180108135367E-5 0.0 2.0466228880386764E-5 1.0233114440193382E-5 8 6.139868664116028E-5 8.186491552154706E-5 0.0 2.0466228880386764E-5 3.069934332058014E-5 9 6.139868664116028E-5 1.3303048772251395E-4 0.0 7.163180108135367E-5 4.093245776077353E-5 10-11 6.651524386125698E-5 1.3303048772251395E-4 0.0 9.209802996174043E-5 4.093245776077353E-5 12-13 7.163180108135367E-5 1.3303048772251395E-4 0.0 1.2791393050241726E-4 4.093245776077353E-5 14-15 8.698147274164374E-5 2.2512851768425438E-4 0.0 1.5861327382299742E-4 9.209802996174043E-5 16-17 9.209802996174043E-5 2.3536163212444777E-4 0.0 1.7907950270338417E-4 1.1256425884212719E-4 18-19 9.209802996174043E-5 2.5071130378473785E-4 0.0 2.097788460239643E-4 1.1256425884212719E-4 20-21 9.209802996174043E-5 2.660609754450279E-4 0.0 2.762940898852213E-4 1.1768081606222387E-4 22-23 9.721458718183712E-5 3.0187687598570473E-4 0.0 3.325762193062849E-4 1.3814704494261065E-4 24-25 1.3303048772251395E-4 3.2745966208618817E-4 0.0 4.707232642488955E-4 1.5861327382299742E-4 26-27 1.3303048772251395E-4 3.4792589096657495E-4 0.0 8.135325979953738E-4 1.637298310430941E-4 28-29 1.8931261714357755E-4 3.4792589096657495E-4 0.0 0.0029573700732158873 1.637298310430941E-4 30-31 2.097788460239643E-4 4.0932457760773527E-4 0.0 0.009905654778107193 1.688463882631908E-4 32-33 2.3536163212444774E-4 4.0932457760773527E-4 0.0 0.02431899646711957 1.9442917436367425E-4 34-35 2.916437615455114E-4 4.5025703536850876E-4 0.0 0.04157202741328561 1.9442917436367425E-4 36-37 3.274596620861882E-4 4.963060503493789E-4 0.0 0.06713946384210877 1.9442917436367425E-4 38-39 3.8374179150725183E-4 5.065391647895724E-4 0.0 0.11234424688166303 1.9442917436367425E-4 40-41 3.990914631675419E-4 5.321219508900558E-4 0.0 0.15717040468693014 1.9442917436367425E-4 42-43 4.1444113482783194E-4 5.525881797704426E-4 0.0 0.19036662793091746 1.9442917436367425E-4 44-45 4.4514047814841204E-4 5.935206375312161E-4 0.0 0.23063393325307843 1.9442917436367425E-4 46-47 5.11655722009669E-4 6.242199808517962E-4 0.0 0.2721752613230435 1.9954573158377094E-4 48-49 5.218888364498625E-4 6.344530952919897E-4 0.0 0.3022708508916522 2.14895403244061E-4 50-51 5.218888364498625E-4 6.907352247130532E-4 0.0 0.3305295964182462 2.200119604641577E-4 52-53 5.218888364498625E-4 6.958517819331499E-4 0.0 0.3889555633145303 2.762940898852213E-4 54-55 5.372385081101525E-4 7.060848963733433E-4 0.0 0.45688297696853397 3.428093337464783E-4 56-57 6.037537519714095E-4 7.060848963733433E-4 0.0 0.5245545627615329 3.530424481866716E-4 58-59 6.037537519714095E-4 7.163180108135367E-4 0.0 0.5796036018925531 3.6327556262686505E-4 60-61 6.037537519714095E-4 7.265511252537301E-4 0.0 0.623989735776892 3.786252342871551E-4 62-63 6.139868664116029E-4 7.470173541341169E-4 0.0 0.6592735143666787 4.1955769204792866E-4 64-65 6.139868664116029E-4 8.953975135169209E-4 0.0 0.6647942796071631 4.1955769204792866E-4 66-67 6.242199808517962E-4 9.10747185177211E-4 0.0 0.6694247638913505 4.1955769204792866E-4 68-69 6.44686209732183E-4 9.312134140575976E-4 0.0 0.6742547939071217 4.1955769204792866E-4 70-71 6.549193241723765E-4 9.465630857178877E-4 0.0 0.6787317814747064 4.400239209283154E-4 72-73 6.600358813924731E-4 9.619127573781778E-4 0.0 0.6821547582549511 4.5025703536850876E-4 74-75 6.651524386125698E-4 9.926121006987578E-4 0.0 0.6846925706361191 4.5025703536850876E-4 76-77 6.651524386125698E-4 0.0010540107873399183 0.0 0.6878443698836986 4.707232642488955E-4 78-79 6.651524386125698E-4 0.0010847101306604985 0.0 0.6898347106423162 4.911894931292823E-4 80-81 7.572504685743102E-4 0.0010847101306604985 0.0 0.6905356789814694 5.065391647895724E-4 82-83 7.879498118948903E-4 0.0010847101306604985 0.0 0.6909603532307376 5.321219508900558E-4 84-85 8.032994835551804E-4 0.0010949432451006918 0.0 0.6912110645345222 5.321219508900558E-4 86-87 8.186491552154705E-4 0.0010949432451006918 0.0 0.6912622301067233 5.321219508900558E-4 88 8.186491552154705E-4 0.0010949432451006918 0.0 0.6912673466639433 5.423550653302492E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12585 0.0 52.08591 1 GTATCAA 22860 0.0 37.68447 1 TCAACGC 28090 0.0 30.090033 4 ATCAACG 28375 0.0 29.772747 3 CAACGCA 28880 0.0 29.297726 5 TATCAAC 29375 0.0 29.035599 2 AACGCAG 29710 0.0 28.493626 6 ACGCAGA 34255 0.0 24.663279 7 CGCAGAG 34580 0.0 24.394407 8 TACATGG 29730 0.0 22.767134 2 GTACATG 30735 0.0 22.43977 1 ACATGGG 30180 0.0 21.71972 3 GCAGAGT 40750 0.0 20.58663 9 GAGTACT 25170 0.0 19.431545 12-13 GTGGTAT 5950 0.0 19.17531 1 CATGGGG 20725 0.0 19.154432 4 TGGTATC 5495 0.0 18.50791 2 AGAGTAC 37155 0.0 18.472294 10-11 CAGAGTA 40050 0.0 18.438847 10-11 GTACTTT 28005 0.0 17.365889 14-15 >>END_MODULE