##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139251_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15180154 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.273183855710556 33.0 33.0 33.0 33.0 33.0 2 32.324970747991095 33.0 33.0 33.0 33.0 33.0 3 32.3461961584843 33.0 33.0 33.0 33.0 33.0 4 36.207069440797504 37.0 37.0 37.0 33.0 37.0 5 36.25663323310159 37.0 37.0 37.0 33.0 37.0 6 36.24282579741945 37.0 37.0 37.0 33.0 37.0 7 36.209953864763165 37.0 37.0 37.0 33.0 37.0 8 36.19590460017731 37.0 37.0 37.0 33.0 37.0 9 36.25999703296818 37.0 37.0 37.0 33.0 37.0 10-11 36.17996747595578 37.0 37.0 37.0 33.0 37.0 12-13 36.13931867884871 37.0 37.0 37.0 33.0 37.0 14-15 37.85863766599469 40.0 37.0 40.0 33.0 40.0 16-17 37.78935991031448 40.0 37.0 40.0 33.0 40.0 18-19 37.76132113020724 40.0 37.0 40.0 33.0 40.0 20-21 37.7722996164466 40.0 37.0 40.0 33.0 40.0 22-23 37.77739421940014 40.0 37.0 40.0 33.0 40.0 24-25 37.77157041514309 40.0 37.0 40.0 33.0 40.0 26-27 37.630059153602446 40.0 37.0 40.0 33.0 40.0 28-29 37.555957876743946 40.0 37.0 40.0 33.0 40.0 30-31 37.43275203729168 40.0 37.0 40.0 33.0 40.0 32-33 37.37752162801887 40.0 37.0 40.0 33.0 40.0 34-35 37.34692734312614 40.0 37.0 40.0 33.0 40.0 36-37 37.28927087690046 40.0 37.0 40.0 33.0 40.0 38-39 37.23084280131498 40.0 37.0 40.0 33.0 40.0 40-41 37.20615454336985 40.0 37.0 40.0 33.0 40.0 42-43 37.117766240042144 40.0 37.0 40.0 33.0 40.0 44-45 37.054450545747926 40.0 37.0 40.0 33.0 40.0 46-47 37.00119581648822 37.0 37.0 40.0 33.0 40.0 48-49 36.9928216101348 37.0 37.0 40.0 33.0 40.0 50-51 36.909041639530784 37.0 37.0 40.0 33.0 40.0 52-53 36.79726687002284 37.0 37.0 40.0 33.0 40.0 54-55 36.602750032241396 37.0 37.0 40.0 33.0 40.0 56-57 36.493711904749375 37.0 37.0 40.0 33.0 40.0 58-59 36.35469930924375 37.0 37.0 40.0 33.0 40.0 60-61 36.212206483643996 37.0 37.0 40.0 33.0 40.0 62-63 36.04021001323023 37.0 37.0 40.0 33.0 40.0 64-65 35.86919991383946 37.0 33.0 40.0 33.0 40.0 66-67 35.66816346796531 37.0 33.0 40.0 27.0 40.0 68-69 35.451214985236874 37.0 33.0 38.5 27.0 40.0 70-71 35.21845814813274 37.0 33.0 37.0 27.0 40.0 72-73 35.001664750755864 37.0 33.0 37.0 27.0 40.0 74-75 34.80137407080518 37.0 33.0 37.0 27.0 40.0 76-77 32.84174394122675 33.0 33.0 37.0 27.0 37.0 78-79 34.26106080510368 37.0 33.0 37.0 27.0 37.0 80-81 34.19233831145252 37.0 33.0 37.0 27.0 37.0 82-83 33.86569198705399 37.0 33.0 37.0 27.0 37.0 84-85 33.96749290030131 37.0 33.0 37.0 27.0 37.0 86-87 33.903354788578504 37.0 33.0 37.0 27.0 37.0 88-89 33.7822261810648 37.0 33.0 37.0 27.0 37.0 90-91 33.44676910597971 33.0 33.0 37.0 27.0 37.0 92-93 33.594112496040324 33.0 33.0 37.0 27.0 37.0 94-95 33.500223494876096 33.0 33.0 37.0 27.0 37.0 96-97 33.53719694088478 33.0 33.0 37.0 27.0 37.0 98-99 33.70021522232257 33.0 33.0 37.0 27.0 37.0 100 33.743348413120614 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 2.0 17 1.0 18 8.0 19 42.0 20 236.0 21 1202.0 22 4314.0 23 11763.0 24 27226.0 25 52158.0 26 89291.0 27 138801.0 28 199541.0 29 274387.0 30 362766.0 31 471573.0 32 605993.0 33 784439.0 34 1030402.0 35 1406032.0 36 2203136.0 37 4043831.0 38 3394619.0 39 78390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.357874235004466 20.499910606967493 14.39030196926856 23.75191318875948 2 14.526736685280003 21.467904739306334 41.71532778916472 22.29003078624894 3 17.842085132996672 26.834688238340664 30.82609702115012 24.497129607512548 4 12.222675738335724 18.62398760908486 39.32510829600279 29.82822835657662 5 13.129926086388846 38.03425182643075 35.74208140444425 13.093740682736158 6 29.153854433887826 38.53173031050937 19.07501070147246 13.239404554130346 7 25.74833562294559 33.04751717275069 23.614450815189358 17.589696389114366 8 24.06251609832153 36.98724663794584 21.38233248490101 17.567904778831625 9 25.47698468368433 16.70879843627389 21.324298992526558 36.48991788751522 10-11 23.880471995437595 26.924200131978694 29.224284922722237 19.97104294986147 12-13 24.9465558861746 24.604147288924366 29.19283289754926 21.256463927351778 14-15 22.00714120337851 25.860302024660708 27.001441304214136 25.131115467746646 16-17 21.452740202767377 28.929512177544442 27.604176479369052 22.01357114031913 18-19 21.448810730115124 27.988457824604414 29.467352570994997 21.095378874285466 20-21 22.2879080991065 27.159508706752188 29.361741780621642 21.190841413519664 22-23 22.01627727997977 27.15873724612911 29.207654869008724 21.617330604882394 24-25 21.800167920025782 27.359427938386265 29.248244846904782 21.59215929468317 26-27 21.731285303226375 27.536517396108028 29.176375491745954 21.555821808919642 28-29 21.62432026210018 27.591939432608843 29.208929291426017 21.574811013864963 30-31 22.000080049250105 27.38375868083591 29.08171753723859 21.5344437326754 32-33 21.739413605969478 27.56236675243468 29.042478085273217 21.655741556322628 34-35 21.846669159061115 27.512440789316056 29.068270347499208 21.57261970412362 36-37 21.80831983148305 27.614745073207146 28.941154452505803 21.635780642804004 38-39 21.684247404824305 27.611014747035007 29.03479020482073 21.669947643319954 40-41 21.943729642107872 27.47598488077306 28.886099383503822 21.694186093615247 42-43 21.89186113363348 27.545875704269314 28.683507629581417 21.878755532515786 44-45 21.942953358157528 27.72866000963451 28.42685285415782 21.901533778050144 46-47 22.064313159045454 27.712235864865598 28.099881280145222 22.12356969594373 48-49 21.964599216648345 27.864313898655134 28.041817909923978 22.129268974772543 50-51 21.952680772533547 28.004663236166007 27.9256890752901 22.116966916010348 52-53 22.071938228555442 27.895885326547397 27.865724534533946 22.16645191036321 54-55 22.107744004349364 27.83132354530091 27.875822123555555 22.18511032679417 56-57 22.113518860286614 27.91708910925453 27.76759138774863 22.20180064271023 58-59 22.047333517323626 27.967861509988573 27.852600177102648 22.132204795585153 60-61 22.160012931322143 28.010696688755743 27.770471061979755 22.05881931794236 62-63 22.04077260643044 28.05881405021795 27.760538140215395 22.13987520313621 64-65 22.033722031423984 28.003383730216385 27.688908211162 22.273986027197633 66-67 22.110285272287804 28.074655400319653 27.565663598192053 22.24939572920049 68-69 22.07820961604286 28.03858352356423 27.615365634572438 22.26784122582048 70-71 22.07589396369917 27.840515657538667 27.682114368470508 22.401476010291656 72-73 22.165148019890257 27.808203079631344 27.60966256476657 22.41698633571183 74-75 22.122442582755717 27.954789301921203 27.536553033485884 22.386215081837197 76-77 22.296207145853327 27.79565499245507 27.46565092231797 22.442486939373634 78-79 22.18558572559159 27.85891102041445 27.471081829150567 22.484421424843397 80-81 22.22212691288325 27.85960283089387 27.485207891311454 22.43306236491142 82-83 22.289390054368685 27.809831299407666 27.533091551086418 22.367687095137228 84-85 22.34001183943742 27.820965139411708 27.52360733899004 22.315415682160825 86-87 22.19379494115475 27.851848062277647 27.618457584689605 22.335899411878003 88-89 22.236242927406824 27.819193579892808 27.575681247858192 22.368882244842176 90-91 22.388588691489 27.748523155437578 27.58553482349108 22.277353329582336 92-93 22.29892670974528 27.728311291837983 27.664791621583866 22.307970376832873 94-95 22.19812569168632 27.749895803558516 27.71156056797443 22.340417936780728 96-97 22.185357350921212 27.868911752473558 27.85873810515106 22.086992791454172 98-99 23.291912472484334 29.752970455791072 28.060228192477926 18.894888879246672 100 22.22344714531504 30.814273903254417 21.87312253390916 25.08915641752138 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3175.0 1 2891.0 2 4470.5 3 6754.5 4 9297.0 5 15576.0 6 20891.5 7 24365.5 8 26526.5 9 26109.0 10 23938.0 11 21194.0 12 22121.5 13 28640.0 14 44683.0 15 67424.0 16 86341.0 17 97776.0 18 101181.5 19 96650.5 20 87741.5 21 78139.0 22 71666.5 23 72873.0 24 83203.5 25 101739.5 26 127625.5 27 157052.5 28 187244.5 29 221141.0 30 255875.0 31 288612.0 32 323056.5 33 359145.0 34 395169.0 35 428638.5 36 464254.5 37 496692.5 38 517791.5 39 534673.5 40 553528.0 41 571514.5 42 584109.0 43 595481.5 44 604026.5 45 612974.0 46 620919.5 47 627199.5 48 628053.0 49 617284.0 50 604625.0 51 586439.0 52 559266.5 53 527841.0 54 493779.0 55 455461.5 56 415310.0 57 374342.5 58 330119.5 59 283526.5 60 236503.5 61 191708.0 62 150758.0 63 115525.5 64 86088.5 65 63638.5 66 47603.0 67 36004.5 68 27496.0 69 19835.5 70 13826.0 71 10050.0 72 7263.5 73 5082.5 74 3371.5 75 2201.5 76 1451.0 77 944.0 78 628.5 79 435.5 80 321.5 81 240.5 82 177.5 83 116.5 84 74.5 85 51.5 86 35.0 87 26.0 88 19.0 89 13.5 90 9.0 91 6.0 92 3.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.317509690613152E-5 10-11 0.0028392333832713426 12-13 2.931459061614263E-4 14-15 0.0032904804523063466 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 355.0 20-21 1370.0 22-23 2770.0 24-25 6487.0 26-27 7361.0 28-29 14093.0 30-31 30652.0 32-33 37944.0 34-35 53639.0 36-37 72253.0 38-39 82363.0 40-41 91854.0 42-43 109578.0 44-45 129446.0 46-47 124375.0 48-49 110994.0 50-51 94169.0 52-53 86777.0 54-55 95165.0 56-57 103328.0 58-59 104291.0 60-61 107918.0 62-63 108339.0 64-65 115060.0 66-67 123669.0 68-69 122288.0 70-71 122553.0 72-73 118813.0 74-75 124168.0 76-77 117731.0 78-79 135176.0 80-81 138403.0 82-83 133872.0 84-85 139042.0 86-87 148637.0 88-89 164590.0 90-91 172941.0 92-93 188810.0 94-95 224410.0 96-97 545923.0 98-99 944801.0 100-101 9823746.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.49745640398892 #Duplication Level Percentage of deduplicated Percentage of total 1 87.67634043896837 71.45398732586116 2 8.07354012102006 13.159459680773752 3 2.2450331437822446 5.48893472282711 4 0.8894025514753063 2.899361826578212 5 0.4321196955266067 1.76083280237423 6 0.2268012704856357 1.1090235992263437 7 0.1405027020036982 0.8015428981832329 8 0.08616716215825573 0.5617923633158313 9 0.054594023976107645 0.4004346680020043 >10 0.1722092940826072 2.0987077192623786 >50 0.0025336610794744817 0.1440041969782981 >100 7.1124471147131E-4 0.08867754916076512 >500 2.97946788733795E-5 0.01850280538229704 >1k 1.4896051235962798E-5 0.014737842074400787 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 6.58754845306576E-6 2 0.0 1.9762645359197277E-5 0.0 0.0 6.58754845306576E-6 3 0.0 1.9762645359197277E-5 0.0 6.58754845306576E-6 6.58754845306576E-6 4 0.0 4.6112839171460316E-5 0.0 3.29377422653288E-5 6.58754845306576E-6 5 0.0 4.6112839171460316E-5 0.0 4.6112839171460316E-5 6.58754845306576E-6 6 0.0 4.6112839171460316E-5 0.0 4.6112839171460316E-5 1.317509690613152E-5 7 0.0 4.6112839171460316E-5 0.0 5.270038762452608E-5 1.9762645359197277E-5 8 0.0 7.246303298372335E-5 0.0 5.9287936077591834E-5 1.9762645359197277E-5 9 0.0 1.0540077524905216E-4 0.0 1.2516342060824942E-4 2.635019381226304E-5 10-11 0.0 1.0540077524905216E-4 0.0 1.317509690613152E-4 3.29377422653288E-5 12-13 0.0 1.0540077524905216E-4 0.0 1.6798248555317685E-4 3.6231516491861676E-5 14-15 0.0 1.5480738864704534E-4 0.0 1.943326793654399E-4 6.58754845306576E-5 16-17 3.29377422653288E-6 1.5810116287357821E-4 0.0 2.5032684121649885E-4 7.905058143678911E-5 18-19 6.58754845306576E-6 1.6798248555317685E-4 0.0 3.392587453328866E-4 8.234435566332199E-5 20-21 6.58754845306576E-6 1.8774513091237413E-4 0.0 4.314844236758072E-4 9.222567834292063E-5 22-23 6.58754845306576E-6 2.1080155049810429E-4 0.0 6.192295545881814E-4 9.55194525694535E-5 24-25 6.58754845306576E-6 2.3715174431036733E-4 0.0 0.0012911594968008887 1.0869454947558504E-4 26-27 6.58754845306576E-6 2.5032684121649885E-4 0.0 0.003056622482222512 1.1857587215518367E-4 28-29 6.58754845306576E-6 2.5032684121649885E-4 0.0 0.010062480262057947 1.2516342060824942E-4 30-31 6.58754845306576E-6 2.8326458348182766E-4 0.0 0.015632252479125044 1.317509690613152E-4 32-33 6.58754845306576E-6 2.8326458348182766E-4 0.0 0.028214470024480645 1.449260659674467E-4 34-35 9.88132267959864E-6 3.3596497110635376E-4 0.0 0.04311879839954193 1.5810116287357821E-4 36-37 1.317509690613152E-5 3.886653587308798E-4 0.0 0.0645942063565363 1.6468871132664398E-4 38-39 1.317509690613152E-5 4.0184045563701134E-4 0.0 0.10702131216850633 1.7127625977970972E-4 40-41 1.317509690613152E-5 4.677159401676689E-4 0.0 0.15076922144531604 1.778638082327755E-4 42-43 1.317509690613152E-5 4.841848113003333E-4 0.0 0.1826134306674359 1.8115758245930836E-4 44-45 1.317509690613152E-5 5.368851989248594E-4 0.0 0.22145361634671162 1.8445135668584126E-4 46-47 1.317509690613152E-5 5.665291669636553E-4 0.0 0.2575336192241528 1.943326793654399E-4 48-49 1.317509690613152E-5 5.665291669636553E-4 0.0 0.28770788491342053 2.2727042163076872E-4 50-51 1.317509690613152E-5 6.225233288147142E-4 0.0 0.31384727717518546 2.305641958573016E-4 52-53 1.317509690613152E-5 6.258171030412472E-4 0.0 0.37633017425251414 2.5691438966956464E-4 54-55 1.317509690613152E-5 6.2911087726778E-4 0.0 0.44739994073841416 2.8326458348182766E-4 56-57 1.317509690613152E-5 6.389921999473787E-4 0.0 0.5210948452828608 3.0302722884102494E-4 58-59 1.317509690613152E-5 6.422859741739115E-4 0.0 0.5745429196568098 3.2937742265328797E-4 60-61 1.317509690613152E-5 6.653423937596416E-4 0.0 0.6105274030816815 3.392587453328866E-4 62-63 1.317509690613152E-5 6.752237164392404E-4 0.0 0.6370324042825917 3.623151649186168E-4 64-65 1.317509690613152E-5 7.246303298372336E-4 0.0 0.6425890014027527 3.7549026182474827E-4 66-67 1.317509690613152E-5 7.279241040637664E-4 0.0 0.6470817094477435 3.8207781027781406E-4 68-69 1.317509690613152E-5 7.476867494229637E-4 0.0 0.6518873260442548 3.8207781027781406E-4 70-71 1.317509690613152E-5 7.608618463290952E-4 0.0 0.6560243064727802 3.886653587308798E-4 72-73 1.317509690613152E-5 7.641556205556281E-4 0.0 0.6596672207673255 4.2819064944927437E-4 74-75 1.317509690613152E-5 8.003871370474897E-4 0.0 0.662414228472254 4.314844236758072E-4 76-77 1.317509690613152E-5 8.563812988985487E-4 0.0 0.6652501680812988 4.347781979023401E-4 78-79 1.317509690613152E-5 8.893190411638775E-4 0.0 0.6670782127770245 4.413657463554059E-4 80-81 1.317509690613152E-5 8.893190411638775E-4 0.0 0.66768097346048 4.6112839171460313E-4 82-83 1.317509690613152E-5 8.893190411638775E-4 0.0 0.6682046835624987 4.94066133979932E-4 84-85 1.317509690613152E-5 8.959065896169433E-4 0.0 0.668478066823301 4.94066133979932E-4 86-87 1.317509690613152E-5 9.156692349761406E-4 0.0 0.6685505298562847 4.94066133979932E-4 88 1.317509690613152E-5 9.617820741476008E-4 0.0 0.6685505298562847 5.138287793391293E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20850 0.0 52.097187 1 GTATCAA 38525 0.0 37.268074 1 TCAACGC 47645 0.0 29.703373 4 ATCAACG 48250 0.0 29.295462 3 CAACGCA 48820 0.0 29.008005 5 TATCAAC 49570 0.0 28.7829 2 AACGCAG 50105 0.0 28.298218 6 ACGCAGA 56910 0.0 24.907194 7 CGCAGAG 57410 0.0 24.638186 8 GTACATG 47440 0.0 21.210468 1 GCAGAGT 67175 0.0 20.853832 9 TACATGG 47240 0.0 20.793116 2 GAGTACT 40465 0.0 20.057306 12-13 ACATGGG 47965 0.0 20.041777 3 GTGGTAT 9840 0.0 19.564785 1 AGAGTAC 61295 0.0 18.917297 10-11 CAGAGTA 65540 0.0 18.765959 10-11 TGGTATC 9665 0.0 18.458305 2 CATGGGG 33895 0.0 18.188044 4 GTACTTT 46095 0.0 17.57997 14-15 >>END_MODULE