##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139250_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10527338 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.26747721028811 33.0 33.0 33.0 33.0 33.0 2 32.31793991985438 33.0 33.0 33.0 33.0 33.0 3 32.341513875587545 33.0 33.0 33.0 33.0 33.0 4 36.201305021269384 37.0 37.0 37.0 33.0 37.0 5 36.24905327443652 37.0 37.0 37.0 33.0 37.0 6 36.237832299105435 37.0 37.0 37.0 33.0 37.0 7 36.201457956417855 37.0 37.0 37.0 33.0 37.0 8 36.18762473476201 37.0 37.0 37.0 33.0 37.0 9 36.255812723026466 37.0 37.0 37.0 33.0 37.0 10-11 36.173471536679074 37.0 37.0 37.0 33.0 37.0 12-13 36.132061210535845 37.0 37.0 37.0 33.0 37.0 14-15 37.856064895038045 40.0 37.0 40.0 33.0 40.0 16-17 37.78433237348321 40.0 37.0 40.0 33.0 40.0 18-19 37.7478691669252 40.0 37.0 40.0 33.0 40.0 20-21 37.75487844797284 40.0 37.0 40.0 33.0 40.0 22-23 37.75539467475541 40.0 37.0 40.0 33.0 40.0 24-25 37.7507972414478 40.0 37.0 40.0 33.0 40.0 26-27 37.610911580850654 40.0 37.0 40.0 33.0 40.0 28-29 37.530424848121726 40.0 37.0 40.0 33.0 40.0 30-31 37.407258977440634 40.0 37.0 40.0 33.0 40.0 32-33 37.34818230092914 40.0 37.0 40.0 33.0 40.0 34-35 37.31133783440015 40.0 37.0 40.0 33.0 40.0 36-37 37.247537610152165 40.0 37.0 40.0 33.0 40.0 38-39 37.182256830384645 40.0 37.0 40.0 33.0 40.0 40-41 37.14510622459701 40.0 37.0 40.0 33.0 40.0 42-43 37.052129270050756 38.5 37.0 40.0 33.0 40.0 44-45 36.977833132055174 37.0 37.0 40.0 33.0 40.0 46-47 36.9209564589777 37.0 37.0 40.0 33.0 40.0 48-49 36.89143793457001 37.0 37.0 40.0 33.0 40.0 50-51 36.79274758879676 37.0 37.0 40.0 33.0 40.0 52-53 36.67004224359802 37.0 37.0 40.0 33.0 40.0 54-55 36.465651172385094 37.0 37.0 40.0 33.0 40.0 56-57 36.3524601612715 37.0 37.0 40.0 33.0 40.0 58-59 36.19221423846571 37.0 37.0 40.0 33.0 40.0 60-61 36.03970168364016 37.0 37.0 40.0 33.0 40.0 62-63 35.85923557557118 37.0 33.0 40.0 30.0 40.0 64-65 35.673939221683646 37.0 33.0 40.0 27.0 40.0 66-67 35.462009861863194 37.0 33.0 38.5 27.0 40.0 68-69 35.2444529641695 37.0 33.0 37.0 27.0 40.0 70-71 35.00842138305879 37.0 33.0 37.0 27.0 40.0 72-73 34.79633661626842 37.0 33.0 37.0 27.0 40.0 74-75 34.607034487294314 37.0 33.0 37.0 27.0 40.0 76-77 32.643107300271865 33.0 33.0 37.0 27.0 37.0 78-79 34.098102535436084 37.0 33.0 37.0 27.0 37.0 80-81 34.04037574225694 37.0 33.0 37.0 27.0 37.0 82-83 33.72414683545409 37.0 33.0 37.0 27.0 37.0 84-85 33.82514039019826 37.0 33.0 37.0 27.0 37.0 86-87 33.77120959011659 37.0 33.0 37.0 27.0 37.0 88-89 33.651859920612466 37.0 33.0 37.0 27.0 37.0 90-91 33.32400089715834 33.0 33.0 37.0 27.0 37.0 92-93 33.45856468760192 33.0 33.0 37.0 27.0 37.0 94-95 33.369673487387054 33.0 33.0 37.0 27.0 37.0 96-97 33.41691319730879 33.0 33.0 37.0 27.0 37.0 98-99 33.58496086585187 33.0 33.0 37.0 27.0 37.0 100 33.62618253748564 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 21.0 20 157.0 21 803.0 22 3161.0 23 8695.0 24 20227.0 25 39383.0 26 66399.0 27 102853.0 28 148061.0 29 201490.0 30 264794.0 31 341437.0 32 437528.0 33 564590.0 34 739178.0 35 1019670.0 36 1611963.0 37 2837956.0 38 2084445.0 39 34526.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.719777592398 20.415911410842895 14.121499661167904 23.742811335591202 2 15.138404409547789 21.591355763441815 40.65232825240341 22.61791157460699 3 18.134080999394147 26.341910937028906 30.42452897399134 25.099479089585607 4 12.497185898277419 18.36363570733646 38.6412025528201 30.497975841566028 5 13.659550021097452 37.6130034012397 35.46772222949429 13.25972434816855 6 30.102681228625887 37.93848929330473 18.607581517758813 13.351247960310575 7 26.490229533809973 32.51404106147252 23.254330771938736 17.741398632778772 8 24.76412365595177 36.302273186250886 20.982151423275287 17.95145173452206 9 25.881331957486285 16.139605349237076 20.943576117521882 37.03548657575475 10-11 24.341743007605398 26.57833084965535 28.79748267857249 20.28244346416676 12-13 25.20767533242943 24.332095489355567 28.730109055879854 21.73012012233515 14-15 22.282824703761193 25.48807920220234 26.492683561667256 25.736412532369208 16-17 21.903794672499355 28.597903857556396 27.032446379132125 22.46585509081213 18-19 21.972435006836484 27.65553362113005 28.76779960897997 21.604231763053487 20-21 22.824292167172516 26.84363318561583 28.762550050584935 21.56952459662672 22-23 22.55731132355561 26.82801733863785 28.526795320942938 22.087876016863607 24-25 22.382225925389363 26.957012624910025 28.74449028898214 21.916271160718473 26-27 22.281599241907575 27.033993805895108 28.670992982815726 22.0134139693816 28-29 22.304264671737567 27.04218482137057 28.626247468774697 22.027303038117168 30-31 22.656527867787783 26.766227187214554 28.585308688283256 21.99193625671441 32-33 22.47426330141318 26.902358840318662 28.470201279931135 22.153176578337018 34-35 22.508079691136107 27.044334141979476 28.45466832811733 21.99291783876709 36-37 22.66883784874652 26.927962709612224 28.263129435879343 22.14007000576191 38-39 22.270404896635267 27.240738577936757 28.36452511056326 22.124331414864713 40-41 22.51755066545689 27.001426441681488 28.363559345136053 22.11746354772557 42-43 22.356845507840738 27.162688711731025 28.056766649617643 22.423699130810597 44-45 22.343772636381058 27.231629666886835 27.918291718940434 22.506305977791673 46-47 22.53886499043868 27.187686645506183 27.708051915763825 22.56539644829131 48-49 22.614130528301875 27.470322812052007 27.509513367162935 22.406033292483187 50-51 22.574197640104895 27.42992553883064 27.513057606322267 22.482819214742193 52-53 22.805827591436856 27.359671894017357 27.398589354856096 22.43591115968969 54-55 22.81722957108486 27.27164158707617 27.39366715711714 22.517461684721827 56-57 22.777649875585844 27.545550294001654 27.15171231086069 22.52508751955181 58-59 22.574639961708986 27.47497231022867 27.357183568358522 22.59320415970382 60-61 22.770515661401387 27.493831423786137 27.325476354076862 22.410176560735614 62-63 22.647474867931646 27.498974821281124 27.41720252979712 22.436347780990108 64-65 22.684680535855446 27.401227752867925 27.320634153619768 22.593457557656865 66-67 22.743252225681616 27.54225994599922 27.198201519175097 22.516286309144064 68-69 22.694501789793676 27.563700841806998 27.175356974032074 22.566440394367255 70-71 22.693888698013513 27.40024489039809 27.084456242214706 22.821410169373692 72-73 22.660142706424832 27.498372827275276 26.95153280978707 22.88995165651282 74-75 22.58810047700035 27.525773284602323 27.112729429810358 22.773396808586973 76-77 22.758029102887473 27.37992428433343 26.978296349256333 22.883750263522764 78-79 22.536788965167652 27.45586962886571 26.97388775514663 23.03345365082001 80-81 22.78279888772429 27.52625568178029 26.958511644291335 22.732433786204084 82-83 22.939521153451857 27.26581088987488 27.099481007390754 22.69518694928251 84-85 22.710182500403434 27.400444888639807 27.07986336877794 22.80950924217882 86-87 22.583438511895185 27.625047302028268 27.068231617921974 22.723282568154577 88-89 22.859254052127227 27.496094857727893 26.963994711346963 22.680656378797913 90-91 22.897514914395398 27.525702238158722 26.979954426868336 22.59682842057755 92-93 22.750782937895778 27.427612172193815 27.097206951766683 22.724397938143724 94-95 22.612627696561095 27.725596513127908 27.14124751608031 22.520528274230692 96-97 22.75275765434549 27.631874055228174 27.272243422000937 22.343124868425406 98-99 23.716321013032058 29.674098950158417 27.469451548735435 19.140128488074087 100 22.631433551686545 30.739061362743698 21.43237252903083 25.197132556538932 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4226.0 1 3426.5 2 3844.0 3 5272.0 4 6534.0 5 10037.0 6 13549.0 7 16671.5 8 19084.0 9 19209.5 10 17037.5 11 14276.5 12 14477.5 13 18522.5 14 29036.0 15 43942.5 16 55919.0 17 62487.0 18 63816.0 19 60498.0 20 54294.0 21 48043.5 22 44383.0 23 45310.0 24 51102.5 25 62232.5 26 77337.0 27 93293.0 28 109923.5 29 128914.5 30 148467.0 31 168378.5 32 190376.0 33 212162.0 34 233994.5 35 255001.5 36 277875.5 37 299295.5 38 315437.5 39 331177.5 40 348095.0 41 362101.5 42 370330.5 43 377938.5 44 387633.5 45 402464.0 46 416816.0 47 431964.5 48 439748.5 49 434934.5 50 431366.5 51 428148.0 52 406201.5 53 373943.0 54 352674.0 55 332951.5 56 310303.5 57 282306.5 58 251779.0 59 220684.5 60 187302.0 61 160253.0 62 132262.5 63 106191.0 64 87468.5 65 69135.0 66 56090.0 67 41910.5 68 27107.0 69 19405.5 70 13902.0 71 8690.5 72 5832.0 73 4187.5 74 3184.5 75 2345.0 76 1529.0 77 870.0 78 626.5 79 495.5 80 338.0 81 223.5 82 181.0 83 115.0 84 63.5 85 43.0 86 35.5 87 32.5 88 25.0 89 16.5 90 11.0 91 9.0 92 9.0 93 7.5 94 5.0 95 3.5 96 3.0 97 2.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 4.749538772289823E-5 10-11 0.0026169958635316923 12-13 2.707237100205199E-4 14-15 0.003400669760959513 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 295.0 20-21 993.0 22-23 1980.0 24-25 3830.0 26-27 5228.0 28-29 8454.0 30-31 16536.0 32-33 21079.0 34-35 29432.0 36-37 38885.0 38-39 43895.0 40-41 50336.0 42-43 62203.0 44-45 74034.0 46-47 71563.0 48-49 62163.0 50-51 51834.0 52-53 49021.0 54-55 53054.0 56-57 56232.0 58-59 38864.0 60-61 61970.0 62-63 61456.0 64-65 67236.0 66-67 71153.0 68-69 71414.0 70-71 71758.0 72-73 69520.0 74-75 73016.0 76-77 67360.0 78-79 79411.0 80-81 82115.0 82-83 79650.0 84-85 82890.0 86-87 91050.0 88-89 101060.0 90-91 107383.0 92-93 120587.0 94-95 155130.0 96-97 413156.0 98-99 685498.0 100-101 7174614.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.23470825661249 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1955284288978 74.24163786573695 2 7.339240890196012 12.217591486409322 3 1.878377672945666 4.690386528101016 4 0.67282941040082 2.240110387247234 5 0.32965943135951487 1.3719553296624996 6 0.1704378234249516 0.8511805505200729 7 0.11154927142947348 0.6499339744568933 8 0.06507930155109967 0.4333485342519912 9 0.04771908948599347 0.35746960424740654 >10 0.18370478475316204 2.4792630563550713 >50 0.0045579522767989315 0.2540218792338055 >100 0.0012507152788954722 0.16396624307982943 >500 4.3485340322026766E-5 0.03100092667092921 >1k 2.17426594359235E-5 0.018133634027017193 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 8.549169790121681E-5 0.0 0.0 0.0 5 0.0 9.499077544579645E-5 0.0 0.0 0.0 6 0.0 9.499077544579645E-5 0.0 0.0 0.0 7 0.0 9.499077544579645E-5 0.0 0.0 0.0 8 0.0 1.0448985299037611E-4 0.0 0.0 9.499077544579646E-6 9 0.0 1.7098339580243362E-4 0.0 9.499077544579646E-6 1.8998155089159292E-5 10-11 9.499077544579646E-6 1.7098339580243362E-4 0.0 9.499077544579646E-6 1.8998155089159292E-5 12-13 1.8998155089159292E-5 1.8048247334701326E-4 0.0 9.499077544579646E-6 1.8998155089159292E-5 14-15 1.8998155089159292E-5 2.5172555493136064E-4 0.0 2.3747693861449113E-5 2.8497232633738938E-5 16-17 1.8998155089159292E-5 2.5647509370365046E-4 0.0 2.8497232633738938E-5 2.8497232633738938E-5 18-19 1.8998155089159292E-5 2.897218651096792E-4 0.0 3.7996310178318584E-5 3.324677140602876E-5 20-21 1.8998155089159292E-5 3.2296863651570795E-4 0.0 6.649354281205752E-5 3.7996310178318584E-5 22-23 2.8497232633738938E-5 3.7521356301089604E-4 0.0 1.1398893053495576E-4 4.2745848950608405E-5 24-25 2.8497232633738938E-5 4.274584895060841E-4 0.0 1.5198524071327433E-4 4.7495387722898226E-5 26-27 2.8497232633738938E-5 4.55955722139823E-4 0.0 2.9922094265425885E-4 4.7495387722898226E-5 28-29 3.7996310178318584E-5 4.607052609121128E-4 0.0 9.166609830519358E-4 4.7495387722898226E-5 30-31 5.6994465267477876E-5 5.224492649518806E-4 0.0 0.003144194667255863 4.7495387722898226E-5 32-33 5.6994465267477876E-5 5.319483424964602E-4 0.0 0.008145458994477047 4.7495387722898226E-5 34-35 5.6994465267477876E-5 6.554363505759957E-4 0.0 0.014315109859681527 5.6994465267477876E-5 36-37 7.599262035663717E-5 7.931729749724005E-4 0.0 0.023467471073884014 5.6994465267477876E-5 38-39 7.599262035663717E-5 8.216702076061394E-4 0.0 0.04649323504194508 5.6994465267477876E-5 40-41 8.074215912892699E-5 9.879040646362833E-4 0.0 0.06941450915701576 5.6994465267477876E-5 42-43 8.549169790121681E-5 0.001021150836042312 0.0 0.08310742943752733 5.6994465267477876E-5 44-45 8.549169790121681E-5 0.001101892995171239 0.0 0.10216732853072638 5.6994465267477876E-5 46-47 8.549169790121681E-5 0.0011636369992110065 0.0 0.12060503804475547 5.6994465267477876E-5 48-49 8.549169790121681E-5 0.0011683865379832964 0.0 0.1384680533673375 5.6994465267477876E-5 50-51 8.549169790121681E-5 0.0013251213174688605 0.0 0.15603659728603755 5.6994465267477876E-5 52-53 8.549169790121681E-5 0.0013393699337857301 0.0 0.2008057497536414 6.17440040397677E-5 54-55 8.549169790121681E-5 0.0013536185501025995 0.0 0.25155457153555816 6.649354281205752E-5 56-57 9.024123667350663E-5 0.0013868653215086282 0.0 0.30672521391447677 6.649354281205752E-5 58-59 9.974031421808627E-5 0.0014058634765977875 0.0 0.4557467424338422 7.124308158434735E-5 60-61 1.0448985299037611E-4 0.001448609325548396 0.0 0.5738535230843733 8.549169790121681E-5 62-63 1.0448985299037611E-4 0.0014723570194098451 0.0 0.5807688515368272 9.499077544579645E-5 64-65 1.0448985299037611E-4 0.0016148431825785399 0.0 0.5855848838519291 9.499077544579645E-5 66-67 1.0448985299037611E-4 0.0016433404152122787 0.0 0.5898689678245346 9.499077544579645E-5 68-69 1.0448985299037611E-4 0.001690835802935177 0.0 0.5945567625927846 9.974031421808627E-5 70-71 1.0448985299037611E-4 0.0017288321131134956 0.0 0.5982139074474477 1.0448985299037611E-4 72-73 1.1398893053495575E-4 0.0017288321131134956 0.0 0.601134873792406 1.0448985299037611E-4 74-75 1.1398893053495575E-4 0.001743080729430365 0.0 0.603723372423304 1.0923939176266593E-4 76-77 1.1398893053495575E-4 0.001852320121193031 0.0 0.6060316482666368 1.1873846930724559E-4 78-79 1.1398893053495575E-4 0.001909314586460509 0.0 0.6075609997513142 1.234880080795354E-4 80-81 1.1398893053495575E-4 0.0019140641252327986 0.0 0.6080264545509986 1.472357019409845E-4 82-83 1.1398893053495575E-4 0.0019235632027773783 0.0 0.6086533936689409 1.7098339580243362E-4 84-85 1.1398893053495575E-4 0.0019473108966388275 0.0 0.6089051192238721 1.7098339580243362E-4 86-87 1.1398893053495575E-4 0.0019758081292725665 0.0 0.6089811118442288 1.7098339580243362E-4 88 1.1398893053495575E-4 0.0020707989047183627 0.0 0.6089858613830011 1.7098339580243362E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12910 0.0 55.448837 1 GTATCAA 24025 0.0 37.548164 1 TCAACGC 29410 0.0 30.081196 4 ATCAACG 29890 0.0 29.583567 3 CAACGCA 30410 0.0 29.093529 5 TATCAAC 30980 0.0 28.767447 2 AACGCAG 30930 0.0 28.674755 6 ACGCAGA 35665 0.0 24.806791 7 GTACATG 31050 0.0 23.699259 1 TACATGG 31340 0.0 23.10506 2 ACATGGG 31480 0.0 22.42172 3 CGCAGAG 39495 0.0 22.390259 8 GCAGAGT 42730 0.0 20.584183 9 CATGGGG 23820 0.0 20.424566 4 GTGGTAT 5915 0.0 20.231625 1 GAGTACT 26320 0.0 19.800089 12-13 AGAGTAC 38345 0.0 19.07348 10-11 CAGAGTA 41720 0.0 18.944002 10-11 ATACAAC 10125 0.0 18.86883 6 TATATAC 13300 0.0 18.58444 3 >>END_MODULE