##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139248_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10911959 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25175039605629 33.0 33.0 33.0 33.0 33.0 2 32.30393946678135 33.0 33.0 33.0 33.0 33.0 3 32.32673903925042 33.0 33.0 33.0 33.0 33.0 4 36.18085900066157 37.0 37.0 37.0 33.0 37.0 5 36.22731830279054 37.0 37.0 37.0 33.0 37.0 6 36.221938608823585 37.0 37.0 37.0 33.0 37.0 7 36.18386111971279 37.0 37.0 37.0 33.0 37.0 8 36.16829416239559 37.0 37.0 37.0 33.0 37.0 9 36.24074540602654 37.0 37.0 37.0 33.0 37.0 10-11 36.15459231472552 37.0 37.0 37.0 33.0 37.0 12-13 36.11254954312054 37.0 37.0 37.0 33.0 37.0 14-15 37.812881215920996 40.0 37.0 40.0 33.0 40.0 16-17 37.73226457320817 40.0 37.0 40.0 33.0 40.0 18-19 37.69522516534382 40.0 37.0 40.0 33.0 40.0 20-21 37.705229993868194 40.0 37.0 40.0 33.0 40.0 22-23 37.703476581920256 40.0 37.0 40.0 33.0 40.0 24-25 37.6976863793048 40.0 37.0 40.0 33.0 40.0 26-27 37.545585815781756 40.0 37.0 40.0 33.0 40.0 28-29 37.45836829390451 40.0 37.0 40.0 33.0 40.0 30-31 37.339498859541195 40.0 37.0 40.0 33.0 40.0 32-33 37.27528769867867 40.0 37.0 40.0 33.0 40.0 34-35 37.230617899792875 40.0 37.0 40.0 33.0 40.0 36-37 37.16855136061646 40.0 37.0 40.0 33.0 40.0 38-39 37.08747872285086 40.0 37.0 40.0 33.0 40.0 40-41 37.05988141605333 37.0 37.0 40.0 33.0 40.0 42-43 36.96790291471544 37.0 37.0 40.0 33.0 40.0 44-45 36.89504160936843 37.0 37.0 40.0 33.0 40.0 46-47 36.83395969126168 37.0 37.0 40.0 33.0 40.0 48-49 36.812614442968545 37.0 37.0 40.0 33.0 40.0 50-51 36.700178843385764 37.0 37.0 40.0 33.0 40.0 52-53 36.57916100634774 37.0 37.0 40.0 33.0 40.0 54-55 36.369995078856775 37.0 37.0 40.0 33.0 40.0 56-57 36.24846660465206 37.0 37.0 40.0 33.0 40.0 58-59 36.09041244581279 37.0 37.0 40.0 33.0 40.0 60-61 35.930277935151835 37.0 33.0 40.0 30.0 40.0 62-63 35.753834641245646 37.0 33.0 40.0 27.0 40.0 64-65 35.571714379191526 37.0 33.0 40.0 27.0 40.0 66-67 35.36159753904112 37.0 33.0 38.5 27.0 40.0 68-69 35.144990159340246 37.0 33.0 37.0 27.0 40.0 70-71 34.909555765961215 37.0 33.0 37.0 27.0 40.0 72-73 34.7014711260632 37.0 33.0 37.0 27.0 40.0 74-75 34.51238686909598 37.0 33.0 37.0 27.0 38.5 76-77 32.5385211766221 33.0 30.0 37.0 27.0 37.0 78-79 34.006458189580435 37.0 33.0 37.0 27.0 37.0 80-81 33.9645829786858 37.0 33.0 37.0 27.0 37.0 82-83 33.645314360338936 37.0 33.0 37.0 27.0 37.0 84-85 33.755706225928066 37.0 33.0 37.0 27.0 37.0 86-87 33.70663460241324 37.0 33.0 37.0 27.0 37.0 88-89 33.59555191913478 35.0 33.0 37.0 27.0 37.0 90-91 33.266011082682155 33.0 33.0 37.0 27.0 37.0 92-93 33.41644147347962 33.0 33.0 37.0 27.0 37.0 94-95 33.33056435446896 33.0 33.0 37.0 27.0 37.0 96-97 33.375125146145706 33.0 33.0 37.0 27.0 37.0 98-99 33.54089676801951 33.0 33.0 37.0 27.0 37.0 100 33.58508040977508 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 26.0 20 164.0 21 921.0 22 3590.0 23 9929.0 24 22087.0 25 42300.0 26 71672.0 27 111132.0 28 157629.0 29 214684.0 30 282050.0 31 361554.0 32 463410.0 33 592032.0 34 776405.0 35 1064294.0 36 1678570.0 37 2908762.0 38 2105535.0 39 45211.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.60132933050793 20.03395540617409 14.096258976046371 24.268456287271604 2 15.007497737115763 21.18703891757658 40.71102173312784 23.09444161217981 3 18.022492569849284 26.123017874242375 30.4879994508777 25.366490105030636 4 12.55506000343293 18.403798987881096 37.96797623598109 31.07316477270488 5 13.78277722634405 37.27187757945205 35.33541502492815 13.609930169275748 6 30.194065062011322 37.58271085879264 18.481447740043745 13.7417763391523 7 26.484593646292108 32.39250624017191 22.779548566852203 18.34335154668378 8 24.74121282897049 36.180533669527165 20.906145266858132 18.17210823464421 9 25.495868934955386 16.348388868136933 20.733184774572038 37.42255742233564 10-11 24.279006455616315 26.44316358237469 28.577664363946774 20.70016559806222 12-13 25.287274211888054 24.077624303886093 28.42150795219997 22.21359353202588 14-15 22.436730970260683 25.29170680171196 26.03700090321322 26.234561324814145 16-17 22.232442405621207 28.487506230549435 26.56213700949573 22.717914354333626 18-19 22.23313430704789 27.3437840079861 28.305449094887546 22.117632590078465 20-21 23.059968789715956 26.533319189192472 28.254746669043374 22.1519653520482 22-23 22.766525040592803 26.765765200131803 28.023631129994587 22.444078629280806 24-25 22.659632610722642 26.963369757009602 28.164338486010955 22.2126591462568 26-27 22.609275740936386 27.004945094201858 28.144191451830018 22.241587713031734 28-29 22.536545426252445 26.758092775966492 28.179389329966753 22.525972467814313 30-31 23.003052917528134 26.68620410142785 28.070250963705018 22.240492017338994 32-33 22.796734365594833 26.810703426474525 28.12305106798022 22.26951113995042 34-35 22.80347099846448 26.928436062526927 28.108693870362846 22.15939906864575 36-37 22.901484457929552 26.65766352367213 27.91985896589005 22.520993052508267 38-39 22.43983167990198 26.845694896065275 28.147675230239948 22.566798193792792 40-41 22.664705500690715 26.60866341935678 28.18962777842567 22.537003301526838 42-43 22.60352098621609 26.73766878131389 27.992184412183647 22.666625820286374 44-45 22.46010402236398 26.941830191608297 27.78655625301443 22.811509533013293 46-47 22.89713501898067 26.7519967436858 27.424572267012792 22.926295970320737 48-49 22.797662746626802 26.970154007266856 27.279410500104373 22.95277274600197 50-51 22.64006493491998 27.113963870973002 27.352291837547398 22.89367935655962 52-53 22.846409836769926 27.086065877923122 27.33858131623044 22.728942969076513 54-55 22.84039754687557 27.004380719723358 27.191809292274975 22.963412441126092 56-57 22.96771260599907 27.207358614446527 26.906988315649333 22.917940463905072 58-59 22.66537046520753 27.313563932655537 27.194639577626194 22.82642602451074 60-61 22.884024037886043 27.421596933540783 26.924835490887222 22.76954353768596 62-63 22.803393726960884 27.49954366428672 26.95644200131666 22.740620607435737 64-65 22.814516948738124 27.4071913947617 26.87415430409132 22.904137352408863 66-67 22.895532361327252 27.40523406189828 26.69054530916817 23.0086882676063 68-69 22.87426170106707 27.287568263690588 26.79130642199266 23.046863613249684 70-71 22.899809187684713 27.132049126786807 26.80424605927419 23.163895626254288 72-73 22.906529432356766 27.15744503834687 26.648412944292154 23.2876125850042 74-75 22.81161905686508 27.28008597948553 26.6923072002336 23.21598776341579 76-77 23.06828812176939 27.212244775647516 26.514441179510655 23.205025923072448 78-79 22.857876681820237 27.267102588807372 26.618235543232906 23.256785186139485 80-81 23.021892258611402 27.22189994304317 26.587712549248145 23.168495249097287 82-83 23.050816244119044 27.180317074323746 26.744278053328813 23.024588628228397 84-85 23.043621840643034 27.232358185193778 26.695574241879378 23.02844573228381 86-87 22.87288529813711 27.325335631573626 26.749369573543518 23.052409496745746 88-89 22.98303110522217 27.23914905313279 26.677466590424615 23.100353251220426 90-91 23.030735929893385 27.270303270933866 26.669274680275045 23.0296861188977 92-93 23.012676731519 27.29761978548636 26.79199973890191 22.89770374409273 94-95 22.84892957393021 27.39533119832544 26.84133461577628 22.914404611968074 96-97 22.822149288530223 27.41443083167218 26.967349158867858 22.796070720929734 98-99 24.007116565252772 29.362580486990986 27.096502667860705 19.533800279895534 100 22.84570480169404 30.34530418359755 21.00658158301379 25.802409431694617 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5403.0 1 4230.5 2 4097.0 3 5240.5 4 6303.5 5 9683.5 6 13076.5 7 16184.5 8 18783.0 9 18798.5 10 16528.5 11 14183.5 12 14923.0 13 19397.0 14 30084.0 15 45331.0 16 57909.5 17 64819.0 18 66199.5 19 62726.0 20 56522.0 21 50317.0 22 46537.0 23 47456.0 24 53743.5 25 65495.0 26 81626.0 27 98673.5 28 116652.5 29 137210.0 30 156763.5 31 175060.5 32 194628.5 33 213610.0 34 232884.0 35 251807.5 36 272806.5 37 293111.0 38 309328.0 39 326270.0 40 343907.5 41 359234.5 42 370746.0 43 381303.5 44 393620.5 45 411429.0 46 428407.5 47 446309.5 48 468608.0 49 476040.0 50 473157.5 51 472542.5 52 458777.5 53 433355.5 54 409457.5 55 383921.5 56 356684.5 57 327147.5 58 293871.0 59 256946.0 60 217814.0 61 183570.5 62 149919.5 63 119903.5 64 96278.5 65 75509.5 66 60872.0 67 45530.0 68 30618.0 69 22962.5 70 16500.0 71 9943.0 72 6603.5 73 4680.0 74 3401.0 75 2463.5 76 1643.0 77 978.5 78 701.0 79 551.5 80 384.0 81 266.5 82 210.0 83 139.5 84 86.5 85 57.5 86 42.5 87 34.5 88 25.5 89 15.0 90 11.0 91 10.0 92 8.5 93 6.5 94 3.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.74927719211555E-5 10-11 0.00272636654884792 12-13 3.80316678242651E-4 14-15 0.0033037147591921854 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 293.0 20-21 1053.0 22-23 2029.0 24-25 4011.0 26-27 6507.0 28-29 10540.0 30-31 19888.0 32-33 25490.0 34-35 35839.0 36-37 49487.0 38-39 53797.0 40-41 60537.0 42-43 73492.0 44-45 86585.0 46-47 84152.0 48-49 77486.0 50-51 64794.0 52-53 62248.0 54-55 72456.0 56-57 80289.0 58-59 81922.0 60-61 85191.0 62-63 87217.0 64-65 92584.0 66-67 99829.0 68-69 91787.0 70-71 91095.0 72-73 87504.0 74-75 92687.0 76-77 86539.0 78-79 100738.0 80-81 102995.0 82-83 99174.0 84-85 102163.0 86-87 109498.0 88-89 121150.0 90-91 126202.0 92-93 137334.0 94-95 170692.0 96-97 405997.0 98-99 679488.0 100-101 6989200.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.6571012870846 #Duplication Level Percentage of deduplicated Percentage of total 1 89.40672205687652 74.7950720285834 2 7.239439541393875 12.112610539522253 3 1.79914755353164 4.5153440734862045 4 0.6786107992061673 2.2708244945479903 5 0.31548550348935217 1.3196301360007807 6 0.16546159998379276 0.8305222697380334 7 0.10457402621778143 0.6123851932309426 8 0.06792304663159651 0.45457961534294716 9 0.04454473605818651 0.3353835146603542 >10 0.17184000908295657 2.2778971181518504 >50 0.004899225928077775 0.27673734030393526 >100 0.0013105799756563635 0.1752825929496612 >500 4.1321624441816E-5 0.02373108348164921 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.164257307051832E-6 2 9.164257307051832E-6 3.665702922820733E-5 0.0 0.0 9.164257307051832E-6 3 9.164257307051832E-6 3.665702922820733E-5 0.0 1.8328514614103665E-5 9.164257307051832E-6 4 9.164257307051832E-6 1.4662811691282932E-4 0.0 1.8328514614103665E-5 9.164257307051832E-6 5 9.164257307051832E-6 1.4662811691282932E-4 0.0 2.7492771921155495E-5 9.164257307051832E-6 6 1.0080683037757015E-4 1.4662811691282932E-4 0.0 2.7492771921155495E-5 1.8328514614103665E-5 7 1.0080683037757015E-4 1.4662811691282932E-4 0.0 4.582128653525916E-5 1.8328514614103665E-5 8 1.0080683037757015E-4 1.5579237421988113E-4 0.0 4.582128653525916E-5 1.8328514614103665E-5 9 1.0080683037757015E-4 3.024204911327105E-4 0.0 4.582128653525916E-5 2.7492771921155495E-5 10-11 1.0538895903109606E-4 3.024204911327105E-4 0.0 5.040341518878507E-5 3.665702922820733E-5 12-13 1.0997108768462198E-4 3.024204911327105E-4 0.0 6.414980114936282E-5 5.040341518878507E-5 14-15 1.1913534499167381E-4 3.6657029228207325E-4 0.0 9.622470172404423E-5 7.789618710994057E-5 16-17 1.8328514614103663E-4 3.8489880689617694E-4 0.0 1.3288173095225156E-4 1.0080683037757015E-4 18-19 1.8328514614103663E-4 4.123915788173324E-4 0.0 1.512102455663552E-4 1.0997108768462198E-4 20-21 1.8328514614103663E-4 4.536307366990657E-4 0.0 2.061957894086662E-4 1.145532163381479E-4 22-23 1.9244940344808847E-4 5.131984091949025E-4 0.0 3.024204911327104E-4 1.3288173095225156E-4 24-25 1.9244940344808847E-4 5.910945963048431E-4 0.0 5.131984091949027E-4 1.4662811691282932E-4 26-27 1.9244940344808847E-4 6.323337541865764E-4 0.0 9.85157660508072E-4 1.4662811691282932E-4 28-29 1.9244940344808847E-4 6.460801401471541E-4 0.0 0.004110169402212746 1.5579237421988113E-4 30-31 2.0161366075514028E-4 7.239763272570947E-4 0.0 0.013242351808689897 1.5579237421988113E-4 32-33 2.1077791806219212E-4 7.285584559106206E-4 0.0 0.031080578656866288 1.5579237421988113E-4 34-35 2.1077791806219212E-4 8.843508301305018E-4 0.0 0.05406911811160581 1.6495663152693297E-4 36-37 2.1077791806219212E-4 0.0010493074616574347 0.0 0.08642811066280583 1.6495663152693297E-4 38-39 2.1077791806219212E-4 0.0010813823622321161 0.0 0.14389716823532786 1.695387601804589E-4 40-41 2.1077791806219212E-4 0.0011638606779955827 0.0 0.2005322783929082 1.7412088883398481E-4 42-43 2.291064326762958E-4 0.0011776070639561605 0.0 0.24556085667110736 1.7412088883398481E-4 44-45 2.3368856132982172E-4 0.001315070923561938 0.0 0.30337357389264386 1.7412088883398481E-4 46-47 2.3827068998334762E-4 0.001420459882593034 0.0 0.35878525569973274 1.7412088883398481E-4 48-49 2.3827068998334762E-4 0.00142504201124656 0.0 0.40662726097119684 2.016136607551403E-4 50-51 2.474349472903995E-4 0.0016037450287340706 0.0 0.4457861324442293 2.016136607551403E-4 52-53 2.474349472903995E-4 0.0016220735433481743 0.0 0.5236731552968628 2.061957894086662E-4 54-55 2.474349472903995E-4 0.001635819929308752 0.0 0.6047951609788857 2.1077791806219212E-4 56-57 2.474349472903995E-4 0.0016587305725763815 0.0 0.6878828998532711 2.1077791806219212E-4 58-59 2.474349472903995E-4 0.0016724769585369592 0.0 0.7487473147580558 2.1077791806219212E-4 60-61 2.7034559055802903E-4 0.0016999697304581147 0.0 0.790430939119181 2.1077791806219212E-4 62-63 3.5740603497502147E-4 0.0017320446310327962 0.0 0.8239629566056837 2.1077791806219212E-4 64-65 3.5740603497502147E-4 0.001970315321016144 0.0 0.8327835542637212 2.1077791806219212E-4 66-67 3.5740603497502147E-4 0.0019886438356302473 0.0 0.8396934042732382 2.1536004671571804E-4 68-69 3.5740603497502147E-4 0.002016136607551403 0.0 0.8465849257681411 2.1994217536924396E-4 70-71 3.8948093554970286E-4 0.00205279363677961 0.0 0.8511395616497459 2.1994217536924396E-4 72-73 4.35302222084962E-4 0.002071122151393714 0.0 0.8548831607596765 2.4285281863687357E-4 74-75 4.3988435073848793E-4 0.0021123613092754474 0.0 0.8576461843377527 2.474349472903995E-4 76-77 4.4446647939201385E-4 0.0022040038823459658 0.0 0.8602992368281442 2.520170759439254E-4 78-79 4.4904860804553977E-4 0.0022544072975347507 0.0 0.8620954312603264 2.7034559055802903E-4 80-81 4.4904860804553977E-4 0.0022681536834953282 0.0 0.8626911079852848 2.7492771921155495E-4 82-83 4.582128653525916E-4 0.0022727358121488544 0.0 0.8632409634237079 2.7492771921155495E-4 84-85 4.7195925131316937E-4 0.002291064326762958 0.0 0.8635479660434942 2.7492771921155495E-4 86-87 4.7654137996669524E-4 0.0023093928413770617 0.0 0.8636396086165646 2.7492771921155495E-4 88 4.857056372737471E-4 0.00240103541444758 0.0 0.8636671013884858 2.840919765186068E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13725 0.0 53.19109 1 GTATCAA 24520 0.0 36.624268 1 TCAACGC 30785 0.0 28.671091 4 ATCAACG 31150 0.0 28.335138 3 TATCAAC 32075 0.0 27.704554 2 CAACGCA 31895 0.0 27.70136 5 AACGCAG 32750 0.0 27.01732 6 ACGCAGA 37270 0.0 23.695297 7 GTGGTAT 6270 0.0 22.35989 1 TGGTATC 6055 0.0 22.165565 2 CGCAGAG 40300 0.0 21.913738 8 GTACATG 31545 0.0 21.598377 1 CTTATAC 18440 0.0 21.046907 1 TACATGG 31620 0.0 20.992924 2 ACATGGG 31795 0.0 20.568184 3 TATACAC 22015 0.0 19.861877 3 GCAGAGT 44340 0.0 19.744465 9 GAGTACT 27065 0.0 18.944511 12-13 CAGAGTA 42925 0.0 18.647587 10-11 AGAGTAC 40075 0.0 18.480377 10-11 >>END_MODULE