##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139247_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15387946 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30138291361303 33.0 33.0 33.0 33.0 33.0 2 32.33879057022945 33.0 33.0 33.0 33.0 33.0 3 32.36680977435195 33.0 33.0 33.0 33.0 33.0 4 36.22995915114337 37.0 37.0 37.0 33.0 37.0 5 36.27542454334061 37.0 37.0 37.0 33.0 37.0 6 36.26307143266554 37.0 37.0 37.0 33.0 37.0 7 36.22711679648473 37.0 37.0 37.0 33.0 37.0 8 36.21380904248039 37.0 37.0 37.0 33.0 37.0 9 36.277505327871566 37.0 37.0 37.0 33.0 37.0 10-11 36.19709219151146 37.0 37.0 37.0 33.0 37.0 12-13 36.15621568336671 37.0 37.0 37.0 33.0 37.0 14-15 37.90497620670101 40.0 37.0 40.0 33.0 40.0 16-17 37.83817924757469 40.0 37.0 40.0 33.0 40.0 18-19 37.799126309645224 40.0 37.0 40.0 33.0 40.0 20-21 37.80411975538044 40.0 37.0 40.0 33.0 40.0 22-23 37.80758699623435 40.0 37.0 40.0 33.0 40.0 24-25 37.804852583579354 40.0 37.0 40.0 33.0 40.0 26-27 37.670857891288335 40.0 37.0 40.0 33.0 40.0 28-29 37.598083038523654 40.0 37.0 40.0 33.0 40.0 30-31 37.48021564710221 40.0 37.0 40.0 33.0 40.0 32-33 37.427395445110925 40.0 37.0 40.0 33.0 40.0 34-35 37.39553224002712 40.0 37.0 40.0 33.0 40.0 36-37 37.338154866087145 40.0 37.0 40.0 33.0 40.0 38-39 37.27739705115396 40.0 37.0 40.0 33.0 40.0 40-41 37.24326528238688 40.0 37.0 40.0 33.0 40.0 42-43 37.152090912522766 40.0 37.0 40.0 33.0 40.0 44-45 37.08535951167345 40.0 37.0 40.0 33.0 40.0 46-47 37.03003130603322 37.0 37.0 40.0 33.0 40.0 48-49 37.00430426676256 37.0 37.0 40.0 33.0 40.0 50-51 36.907753355768065 37.0 37.0 40.0 33.0 40.0 52-53 36.782436028975795 37.0 37.0 40.0 33.0 40.0 54-55 36.575468753915686 37.0 37.0 40.0 33.0 40.0 56-57 36.46340010471803 37.0 37.0 40.0 33.0 40.0 58-59 36.3029277040096 37.0 37.0 40.0 33.0 40.0 60-61 36.148322999056546 37.0 37.0 40.0 33.0 40.0 62-63 35.96762707813272 37.0 35.0 40.0 33.0 40.0 64-65 35.77912530749603 37.0 33.0 40.0 30.0 40.0 66-67 35.56606631030199 37.0 33.0 40.0 27.0 40.0 68-69 35.34814645729965 37.0 33.0 37.0 27.0 40.0 70-71 35.1172054848263 37.0 33.0 37.0 27.0 40.0 72-73 34.91002035354466 37.0 33.0 37.0 27.0 40.0 74-75 34.72079698395624 37.0 33.0 37.0 27.0 40.0 76-77 32.72246132682001 33.0 33.0 37.0 27.0 37.0 78-79 34.1870554655821 37.0 33.0 37.0 27.0 37.0 80-81 34.14110693930361 37.0 33.0 37.0 27.0 37.0 82-83 33.826345514750344 37.0 33.0 37.0 27.0 37.0 84-85 33.9325325208119 37.0 33.0 37.0 27.0 37.0 86-87 33.88365799203294 37.0 33.0 37.0 27.0 37.0 88-89 33.7724190297196 37.0 33.0 37.0 27.0 37.0 90-91 33.449278677706715 33.0 33.0 37.0 27.0 37.0 92-93 33.59924470978101 33.0 33.0 37.0 27.0 37.0 94-95 33.51269507425849 33.0 33.0 37.0 27.0 37.0 96-97 33.55589179924244 33.0 33.0 37.0 27.0 37.0 98-99 33.71416625652152 33.0 33.0 37.0 27.0 37.0 100 33.76092781319694 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 4.0 19 31.0 20 198.0 21 1207.0 22 4429.0 23 12521.0 24 27811.0 25 53069.0 26 90760.0 27 140141.0 28 201962.0 29 275654.0 30 361878.0 31 471186.0 32 606728.0 33 784630.0 34 1037488.0 35 1432897.0 36 2283878.0 37 4159935.0 38 3358405.0 39 83132.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.29563191864593 19.899302999893553 13.629687808886255 24.17537727257426 2 15.147668181315426 21.45704176502829 40.37330908231677 23.021980971339513 3 18.144097984227393 26.160431028286684 30.252920045339383 25.442550942146536 4 12.565712148976868 18.09869881269404 38.63631962316478 30.69926941516431 5 13.700925386663041 37.463180596032764 35.47404572384124 13.36184829346295 6 30.24269775836229 37.788786105695976 18.642748031478664 13.325768104463066 7 26.641931288295396 32.34226972202788 23.252388590394066 17.76341039928266 8 24.72569113512616 36.27931889025345 21.010373964140502 17.984616010479893 9 25.66219855867694 16.369183799396218 21.045929134787002 36.922688507139846 10-11 24.26269666334298 26.52538318860464 28.88509960047511 20.326820547577267 12-13 25.24483752941474 24.158624286075007 28.75754037658854 21.83899780792172 14-15 22.369655144087908 25.427108860151403 26.35383065066432 25.849405345096365 16-17 22.16379950904429 28.495706964399275 26.856765028938884 22.483728497617548 18-19 22.196581662035985 27.64728313967309 28.449791154712916 21.706344043578003 20-21 22.97510204986167 26.810867979638576 28.40987823034417 21.804151740155586 22-23 22.72315853203174 26.711578339834475 28.176352086719174 22.38891104141461 24-25 22.527506157471542 26.879298540529806 28.342555550026123 22.250639751972532 26-27 22.462910208938347 26.976319392956928 28.245425613300807 22.31534478480392 28-29 22.526653577962094 26.96812593944512 28.233173248207947 22.272047234384836 30-31 22.79993889533448 26.75188639483125 28.140030656562466 22.308144053271803 32-33 22.55717369347537 26.91050951912984 28.07394512540588 22.458371661988917 34-35 22.726107377760265 26.98625855181139 28.046533027512794 22.241101042915556 36-37 22.826453423758117 26.85185270279833 27.86184825079223 22.459845622651322 38-39 22.48399470526567 27.20294233972325 27.970457901537 22.34260505347408 40-41 22.753254896865915 26.91924780135895 27.921444660994748 22.406052640780388 42-43 22.54020195696334 27.081275001470985 27.69406325335696 22.684459788208716 44-45 22.552891654932665 27.16260779710752 27.570629327045708 22.713871220914108 46-47 22.780945335426082 27.103949894311786 27.35252188612544 22.76258288413669 48-49 22.74398540943533 27.33675092339578 27.192893892033943 22.726369775134945 50-51 22.71498669442398 27.33736085811475 27.219190315675274 22.728462131785996 52-53 22.95657388361651 27.244199239639627 27.060040701407495 22.73918617533637 54-55 22.940722094264125 27.10708598340596 27.12014576795748 22.83204615437244 56-57 22.929009872038026 27.329213686020502 26.959732422921174 22.7820440190203 58-59 22.764601241880438 27.296485829019346 27.081578844183475 22.85733408491674 60-61 22.93595744894756 27.269576392513876 27.045404326478096 22.74906183206047 62-63 22.87304926071763 27.3616849137462 27.082893382706512 22.68237244282966 64-65 22.88768167552323 27.267354386834803 27.028754561030183 22.816209376611788 66-67 22.934970020992164 27.38567867808811 26.792139142842768 22.887212158076952 68-69 22.854179151144898 27.30815324461936 26.877390248734777 22.960277355500963 70-71 22.91615977741493 27.157239154946588 26.860254002188494 23.06634706544999 72-73 22.899126970291693 27.207494624613215 26.732130979758395 23.161247425336697 74-75 22.770746655657238 27.262925288730926 26.802654450668562 23.163673604943273 76-77 22.98050285594045 27.180046987588824 26.647729811243444 23.191720345227285 78-79 22.787353983116105 27.258548522675806 26.740841206727474 23.213256287480615 80-81 22.926930053068283 27.23605520511323 26.681280503912973 23.155734237905516 82-83 23.01236204985512 27.137060133669305 26.82060506746972 23.02997274900585 84-85 22.938843674454297 27.226968396229402 26.80258214459892 23.03160578471738 86-87 22.818241511291024 27.32779233091315 26.78685420569391 23.06711195210191 88-89 22.882091742385256 27.20304776457757 26.738640310254613 23.17622018278256 90-91 22.92634348854705 27.15854015977275 26.79821713514447 23.11689921653573 92-93 22.906849114700044 27.24100649235728 26.892550705475166 22.959593687467514 94-95 22.71418897762791 27.339774174492952 26.93745099111044 23.008585856768697 96-97 22.707529817940863 27.361993907132998 27.05533466876313 22.875141606163005 98-99 23.89843913550273 29.333263422778177 27.176551844873707 19.59174559684539 100 22.786032270216165 30.315417240911263 20.990210347637635 25.908340141234937 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5322.0 1 4467.5 2 4964.5 3 6652.0 4 8431.5 5 13103.5 6 17359.0 7 20467.0 8 22833.0 9 22700.0 10 20844.0 11 18872.5 12 19818.5 13 25272.0 14 38230.5 15 56495.0 16 71670.5 17 80175.5 18 81733.0 19 77547.0 20 71068.5 21 65384.0 22 62609.5 23 65869.0 24 76866.5 25 95950.5 26 121595.5 27 149001.5 28 177660.5 29 208048.0 30 235468.5 31 260798.5 32 287848.0 33 316723.0 34 344668.5 35 372256.0 36 405194.5 37 435044.0 38 458205.5 39 480974.0 40 504403.0 41 524065.5 42 539515.5 43 556315.5 44 573122.0 45 596401.0 46 619341.5 47 641029.0 48 653462.0 49 650376.0 50 646047.5 51 639283.5 52 614680.0 53 575987.0 54 545029.0 55 517532.5 56 485806.0 57 446313.0 58 401377.5 59 352539.5 60 299488.5 61 253244.0 62 207194.5 63 165202.5 64 132653.5 65 104322.5 66 86384.5 67 65860.5 68 43714.0 69 32537.0 70 23289.5 71 13784.0 72 8945.0 73 6314.0 74 4616.5 75 3299.0 76 2177.5 77 1279.0 78 928.5 79 746.0 80 516.0 81 342.5 82 258.5 83 160.0 84 92.0 85 65.5 86 46.5 87 39.0 88 30.0 89 19.5 90 12.0 91 6.5 92 4.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 6.498593119575543E-6 10-11 0.0027229105171021526 12-13 2.4369724198408286E-4 14-15 0.00347024872585334 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 382.0 20-21 1257.0 22-23 2583.0 24-25 5426.0 26-27 7881.0 28-29 13585.0 30-31 26110.0 32-33 33888.0 34-35 47908.0 36-37 66836.0 38-39 75318.0 40-41 84265.0 42-43 102921.0 44-45 122614.0 46-47 120308.0 48-49 110105.0 50-51 95640.0 52-53 92925.0 54-55 101041.0 56-57 107621.0 58-59 115181.0 60-61 113171.0 62-63 115585.0 64-65 125920.0 66-67 133644.0 68-69 136776.0 70-71 136907.0 72-73 130715.0 74-75 136625.0 76-77 130772.0 78-79 148814.0 80-81 151147.0 82-83 144801.0 84-85 148946.0 86-87 158836.0 88-89 173963.0 90-91 181381.0 92-93 194841.0 94-95 238376.0 96-97 566241.0 98-99 951305.0 100-101 9835385.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.92841273790773 #Duplication Level Percentage of deduplicated Percentage of total 1 88.7494597679219 73.59851829900566 2 7.622923781511464 12.643139392455902 3 1.9205313312930905 4.777998447526705 4 0.7609557707349471 2.524194169232015 5 0.350934907033313 1.455123740729893 6 0.192809730254791 0.9593642934272382 7 0.11091671912075798 0.643870322394656 8 0.07827653055506864 0.5193078746849743 9 0.042758838526184666 0.3191330348543693 >10 0.16465008870564296 2.101567191138628 >50 0.00435397233677462 0.24107928942501866 >100 0.0013691467252159525 0.17877758476338076 >500 5.941528081864075E-5 0.03792636036145547 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.599437247830217E-5 0.0 0.0 0.0 3 0.0 3.249296559787772E-5 0.0 0.0 0.0 4 0.0 1.1047608303278424E-4 0.0 0.0 0.0 5 0.0 1.2347326927193532E-4 0.0 0.0 6.498593119575543E-6 6 0.0 1.2347326927193532E-4 0.0 0.0 1.2997186239151086E-5 7 0.0 1.2347326927193532E-4 0.0 0.0 1.2997186239151086E-5 8 0.0 1.4296904863066195E-4 0.0 6.498593119575543E-6 1.949577935872663E-5 9 0.0 2.0795497982641737E-4 0.0 6.498593119575543E-6 1.949577935872663E-5 10-11 0.0 2.1445357294599292E-4 0.0 6.498593119575543E-6 1.949577935872663E-5 12-13 0.0 2.2095216606556848E-4 0.0 1.2997186239151086E-5 2.27450759185144E-5 14-15 3.2492965597877714E-6 3.3142824909835266E-4 0.0 1.2997186239151086E-5 2.9243669038089944E-5 16-17 1.2997186239151086E-5 3.41176138777716E-4 0.0 2.599437247830217E-5 3.249296559787772E-5 18-19 1.2997186239151086E-5 3.541733250168671E-4 0.0 2.599437247830217E-5 3.574226215766549E-5 20-21 1.2997186239151086E-5 3.671705112560182E-4 0.0 3.574226215766549E-5 4.224085527724103E-5 22-23 1.949577935872663E-5 4.094113665332592E-4 0.0 4.54901518370288E-5 4.54901518370288E-5 24-25 1.949577935872663E-5 4.7764659428880244E-4 0.0 5.198874495660434E-5 4.873944839681657E-5 26-27 2.599437247830217E-5 5.166381530062557E-4 0.0 1.2997186239151084E-4 5.848733807617989E-5 28-29 2.599437247830217E-5 5.198874495660435E-4 0.0 8.870579608220616E-4 5.848733807617989E-5 30-31 2.599437247830217E-5 5.913719738813745E-4 0.0 0.0031745627389126525 5.848733807617989E-5 32-33 2.9243669038089944E-5 5.913719738813745E-4 0.0 0.007635846915501263 5.848733807617989E-5 34-35 3.899155871745326E-5 7.148452431533097E-4 0.0 0.013494328612798614 6.498593119575544E-5 36-37 3.899155871745326E-5 8.285706227458817E-4 0.0 0.023121994319449782 6.498593119575544E-5 38-39 3.899155871745326E-5 8.643128849035472E-4 0.0 0.04313116253462288 6.498593119575544E-5 40-41 3.899155871745326E-5 9.585424851373927E-4 0.0 0.06330279557778537 6.498593119575544E-5 42-43 3.899155871745326E-5 9.877861541754825E-4 0.0 0.07528945058684246 7.473382087511875E-5 44-45 3.899155871745326E-5 0.0011112594234474178 0.0 0.09263419562298958 8.448171055448205E-5 46-47 3.899155871745326E-5 0.001208738320241051 0.0 0.10965726029971772 8.448171055448205E-5 48-49 3.899155871745326E-5 0.0012119876168008386 0.0 0.12704749548770186 9.09803036740576E-5 50-51 4.873944839681657E-5 0.001364704555110864 0.0 0.14450271660688177 9.09803036740576E-5 52-53 5.198874495660434E-5 0.0013906989275891662 0.0 0.1921374041733705 1.1047608303278424E-4 54-55 5.198874495660434E-5 0.0014004468172685294 0.0 0.2469822808060283 1.2997186239151087E-4 56-57 5.198874495660434E-5 0.001423191893187044 0.0 0.3124556064857519 1.3322115895129862E-4 58-59 5.848733807617989E-5 0.0014459369691055585 0.0 0.37106966712776346 1.364704555110864E-4 60-61 6.173663463596766E-5 0.0014751806381436484 0.0 0.3914005157023556 1.364704555110864E-4 62-63 7.798311743490651E-5 0.0015141721968611015 0.0 0.42332160510571065 1.5596623486981303E-4 64-65 7.798311743490651E-5 0.0016376454661330368 0.0 0.4321239494861757 1.5596623486981303E-4 66-67 7.798311743490651E-5 0.001660390542051551 0.0 0.43749828599606466 1.5596623486981303E-4 68-69 8.448171055448205E-5 0.0017091299904483678 0.0 0.44295710421650814 1.5596623486981303E-4 70-71 8.448171055448205E-5 0.0017318750663668824 0.0 0.44776606312499406 1.5596623486981303E-4 72-73 9.747889679363315E-5 0.0017546201422853967 0.0 0.45178219367289174 1.7221271766875188E-4 74-75 9.747889679363315E-5 0.001777365218203911 0.0 0.45496975359804354 1.7546201422853966E-4 76-77 9.747889679363315E-5 0.0018423511493996666 0.0 0.4583490220202228 1.7546201422853966E-4 78-79 9.747889679363315E-5 0.0018715948184377564 0.0 0.460597535239596 1.7871131078832744E-4 80-81 9.747889679363315E-5 0.0018748441149975441 0.0 0.4613611199311461 1.85209903907903E-4 82-83 9.747889679363315E-5 0.0018975891909160587 0.0 0.4618387665254349 1.8845920046769074E-4 84-85 9.747889679363315E-5 0.0019365807496335118 0.0 0.46217344407109306 1.8845920046769074E-4 86-87 9.747889679363315E-5 0.001962575122111814 0.0 0.46230016663692475 1.8845920046769074E-4 88 9.747889679363315E-5 0.0020860483913837493 0.0 0.46230341593348456 1.8845920046769074E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17295 0.0 51.27865 1 GTATCAA 31165 0.0 36.64052 1 TCAACGC 38520 0.0 28.945696 4 ATCAACG 39445 0.0 28.2994 3 CAACGCA 39660 0.0 28.104727 5 TATCAAC 40890 0.0 27.508284 2 AACGCAG 40870 0.0 27.28311 6 ACGCAGA 47315 0.0 23.584883 7 GTACATG 42540 0.0 21.60094 1 CGCAGAG 51915 0.0 21.478933 8 TACATGG 42500 0.0 21.189047 2 ACATGGG 42690 0.0 20.344217 3 GCAGAGT 57360 0.0 19.359585 9 GTGGTAT 8690 0.0 18.8282 1 GAGTACT 33430 0.0 18.658947 12-13 AGAGTAC 51040 0.0 18.387363 10-11 CATGGGG 33215 0.0 17.851921 4 TGGTATC 8405 0.0 17.78935 2 CAGAGTA 55415 0.0 17.779964 10-11 TATATAC 17740 0.0 16.615952 3 >>END_MODULE