##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139245_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20078975 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.31423018356266 33.0 33.0 33.0 33.0 33.0 2 32.35807684406201 33.0 33.0 33.0 33.0 33.0 3 32.386484569057934 33.0 33.0 33.0 33.0 33.0 4 36.252449788896094 37.0 37.0 37.0 33.0 37.0 5 36.29873731104302 37.0 37.0 37.0 33.0 37.0 6 36.281748396021214 37.0 37.0 37.0 33.0 37.0 7 36.24859336694229 37.0 37.0 37.0 33.0 37.0 8 36.23369400081428 37.0 37.0 37.0 33.0 37.0 9 36.29674487866039 37.0 37.0 37.0 33.0 37.0 10-11 36.2176677096316 37.0 37.0 37.0 33.0 37.0 12-13 36.177862341080655 37.0 37.0 37.0 33.0 37.0 14-15 37.94650986915418 40.0 37.0 40.0 33.0 40.0 16-17 37.878138400989094 40.0 37.0 40.0 33.0 40.0 18-19 37.84066430183812 40.0 37.0 40.0 33.0 40.0 20-21 37.846678769736876 40.0 37.0 40.0 33.0 40.0 22-23 37.85213438962688 40.0 37.0 40.0 33.0 40.0 24-25 37.84915219955092 40.0 37.0 40.0 33.0 40.0 26-27 37.718246615220586 40.0 37.0 40.0 33.0 40.0 28-29 37.64956614514436 40.0 37.0 40.0 33.0 40.0 30-31 37.534210414048154 40.0 37.0 40.0 33.0 40.0 32-33 37.485102789572224 40.0 37.0 40.0 33.0 40.0 34-35 37.45421497582255 40.0 37.0 40.0 33.0 40.0 36-37 37.40166338320271 40.0 37.0 40.0 33.0 40.0 38-39 37.346484238558546 40.0 37.0 40.0 33.0 40.0 40-41 37.317839681448554 40.0 37.0 40.0 33.0 40.0 42-43 37.22988067831862 40.0 37.0 40.0 33.0 40.0 44-45 37.166383061592185 40.0 37.0 40.0 33.0 40.0 46-47 37.117465612122444 40.0 37.0 40.0 33.0 40.0 48-49 37.10227961135645 40.0 37.0 40.0 33.0 40.0 50-51 37.019892299923754 37.0 37.0 40.0 33.0 40.0 52-53 36.89994290181167 37.0 37.0 40.0 33.0 40.0 54-55 36.700259550193536 37.0 37.0 40.0 33.0 40.0 56-57 36.59475324764246 37.0 37.0 40.0 33.0 40.0 58-59 36.449441824630654 37.0 37.0 40.0 33.0 40.0 60-61 36.30518913447982 37.0 37.0 40.0 33.0 40.0 62-63 36.1230105953495 37.0 37.0 40.0 33.0 40.0 64-65 35.93821413417963 37.0 35.0 40.0 33.0 40.0 66-67 35.73244408437441 37.0 33.0 40.0 33.0 40.0 68-69 35.512963921473414 37.0 33.0 37.0 27.0 40.0 70-71 35.27822129007727 37.0 33.0 37.0 27.0 40.0 72-73 35.055464056773246 37.0 33.0 37.0 27.0 40.0 74-75 34.857261313915544 37.0 33.0 37.0 27.0 40.0 76-77 32.87968592768523 33.0 33.0 37.0 27.0 37.0 78-79 34.307041940258564 37.0 33.0 37.0 27.0 37.0 80-81 34.24507960020247 37.0 33.0 37.0 27.0 37.0 82-83 33.93154628385366 37.0 33.0 37.0 27.0 37.0 84-85 34.030664430237486 37.0 33.0 37.0 27.0 37.0 86-87 33.97434855534944 37.0 33.0 37.0 27.0 37.0 88-89 33.85661256747326 37.0 33.0 37.0 27.0 37.0 90-91 33.5274283063746 37.0 33.0 37.0 27.0 37.0 92-93 33.6753798135464 35.0 33.0 37.0 27.0 37.0 94-95 33.58549084414575 33.0 33.0 37.0 27.0 37.0 96-97 33.6174800321093 33.0 33.0 37.0 27.0 37.0 98-99 33.77109734271258 33.0 33.0 37.0 27.0 37.0 100 33.81582110630332 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 36.0 20 297.0 21 1380.0 22 5288.0 23 14836.0 24 33472.0 25 64744.0 26 111378.0 27 174091.0 28 252480.0 29 348031.0 30 460655.0 31 601238.0 32 776038.0 33 1008335.0 34 1331019.0 35 1830940.0 36 2907653.0 37 5462990.0 38 4594706.0 39 99364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.836418442674486 20.13111227042217 13.971599645898259 24.06086964100508 2 14.739074081221776 21.379622216771523 41.22329949611472 22.658004205891984 3 18.052594816219454 26.444965442708106 30.424177528982433 25.078262212090006 4 12.47796762533944 18.22398304694338 39.0268527153403 30.271196612376876 5 13.478840428856554 37.78210790142425 35.515577861917755 13.223473807801444 6 29.801351911638918 38.0451043940241 18.926578672467095 13.22696502186989 7 26.38471336310743 32.64449505017064 23.412146287347834 17.558645299374096 8 24.386020700757882 36.73857853799808 21.247274823540543 17.628125937703494 9 25.717162071419104 16.667663563801508 21.07453823948829 36.540636125291094 10-11 24.11887962247643 26.6611453182205 29.12507819025777 20.094896869045304 12-13 25.10380225831341 24.26716871883937 29.08614493631319 21.542884086534027 14-15 22.258691425294113 25.599744460189207 26.603548047852005 25.53801606666467 16-17 21.87751615807082 28.665447314915227 27.254239820508765 22.202796706505186 18-19 21.927917137204464 27.881470543192567 28.853459900219008 21.337152419383955 20-21 22.677350856173113 27.117765306011403 28.72367587770068 21.481207960114805 22-23 22.4140848312937 26.98660732853016 28.57779989088777 22.021507949288367 24-25 22.201196194411022 27.14039968782539 28.618518731909077 22.039885385854515 26-27 22.140546085455483 27.29829004961276 28.54779241326239 22.013371451669368 28-29 22.124348089772532 27.35133415426748 28.572409712284486 21.951908043675505 30-31 22.395817453971162 27.210772725628324 28.414013175868273 21.97939664453224 32-33 22.203471999479525 27.363963418269073 28.364840220136383 22.067724362115023 34-35 22.332146048878272 27.36325109946145 28.32173393840163 21.982868913258653 36-37 22.31890688030515 27.320627113433755 28.296449744976382 22.064016261284717 38-39 22.176171176157677 27.47882161118834 28.344382898299315 22.000624314354667 40-41 22.421997777805082 27.304922956139183 28.201696879890886 22.07138238616485 42-43 22.30289153195266 27.435978874523425 27.99578795049643 22.265341643027483 44-45 22.410422485747613 27.48488036416249 27.871076533094246 22.23362061699565 46-47 22.48066834591803 27.504440821924554 27.589117560207043 22.425773271950373 48-49 22.34840644436407 27.670695058625743 27.583825802990532 22.397072694019656 50-51 22.387904757996633 27.726877049554243 27.519185067132373 22.366033125316747 52-53 22.606626516511316 27.60048435689789 27.380256684024403 22.41263244256639 54-55 22.530297251402267 27.506395577442667 27.441355182160493 22.521951988994573 56-57 22.50027879709055 27.65631378062894 27.408646603695168 22.434760818585342 58-59 22.497332567126303 27.658617866616837 27.399012441905214 22.445037124351646 60-61 22.55999995275256 27.61660077438553 27.439812131295483 22.38358714156643 62-63 22.538764552890424 27.721248747111098 27.355647359897805 22.384339340100674 64-65 22.51490366656937 27.64791027522574 27.3485564443755 22.488629613829396 66-67 22.53380104711525 27.685289298010012 27.238607114197904 22.542302540676836 68-69 22.48712928120151 27.67603738221628 27.325441200318696 22.51139213626351 70-71 22.517743837171057 27.46548435958233 27.355907091014668 22.66086471223194 72-73 22.54465674583328 27.52867835250062 27.253866527026844 22.67279837463926 74-75 22.37404769304249 27.668349886761508 27.292359892278228 22.66524252791778 76-77 22.609297301308732 27.530569379631437 27.195412147252963 22.66472117180687 78-79 22.485583998841893 27.615870148861926 27.1928120018799 22.705733850416284 80-81 22.525700129322562 27.671591816741998 27.138455961246912 22.66425209268853 82-83 22.577629445753384 27.58878965879864 27.199417111169954 22.63416378427802 84-85 22.557478290948996 27.63756321866501 27.222365690156973 22.58259280022902 86-87 22.457565979653673 27.604580392202273 27.30504329288836 22.632810335255694 88-89 22.48599408930835 27.61898098855416 27.237520105304437 22.657504816833058 90-91 22.56062637185297 27.630675028389994 27.24589718812838 22.562801411628662 92-93 22.512509842821515 27.6143015745407 27.26369043996372 22.60949814267406 94-95 22.431998541808742 27.631741481989618 27.285548701102158 22.650711275099482 96-97 22.465073515304987 27.739091489323144 27.38672680103068 22.409108194341194 98-99 23.57424613361422 29.687708991543737 27.5645273446358 19.173517530206244 100 22.49436637275019 30.711691894518495 21.393258158589497 25.40068357414182 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4229.0 1 3830.0 2 5157.0 3 7267.0 4 9550.5 5 15581.0 6 20956.5 7 24272.0 8 25993.5 9 25220.0 10 23055.5 11 20791.5 12 22335.5 13 29076.0 14 44645.0 15 67227.0 16 86836.5 17 99054.0 18 102821.0 19 98554.0 20 89562.0 21 79915.0 22 74011.5 23 75971.0 24 87611.5 25 109250.5 26 140307.0 27 176982.5 28 216645.0 29 260721.0 30 303973.5 31 347094.5 32 393745.5 33 438236.0 34 482762.5 35 527443.0 36 575683.0 37 619669.5 38 650786.0 39 679034.5 40 711479.0 41 740890.0 42 762595.0 43 782615.5 44 799293.5 45 816088.0 46 823660.0 47 823643.5 48 825965.5 49 819846.5 50 806060.5 51 787828.5 52 758790.0 53 719093.5 54 677899.0 55 632312.5 56 580262.0 57 523425.0 58 463309.0 59 401479.0 60 336592.0 61 274895.5 62 218882.5 63 167575.5 64 122762.0 65 88869.5 66 65144.0 67 48437.0 68 36093.5 69 25459.0 70 17677.5 71 12546.5 72 8568.0 73 5669.0 74 3770.5 75 2473.0 76 1622.5 77 1065.5 78 733.0 79 542.0 80 388.5 81 268.0 82 192.5 83 142.5 84 104.5 85 75.5 86 58.0 87 43.0 88 32.0 89 24.5 90 17.0 91 12.5 92 11.0 93 7.0 94 3.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.9882003438920565E-5 10-11 0.002721752479895015 12-13 2.6146753009055493E-4 14-15 0.003458841898055055 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 389.0 20-21 1410.0 22-23 2861.0 24-25 6262.0 26-27 8286.0 28-29 13365.0 30-31 26277.0 32-33 33312.0 34-35 47260.0 36-37 65102.0 38-39 77885.0 40-41 86868.0 42-43 107713.0 44-45 129719.0 46-47 127568.0 48-49 115285.0 50-51 104309.0 52-53 104627.0 54-55 114582.0 56-57 122554.0 58-59 126239.0 60-61 126738.0 62-63 125660.0 64-65 136024.0 66-67 147482.0 68-69 153408.0 70-71 154957.0 72-73 152050.0 74-75 159750.0 76-77 154451.0 78-79 176779.0 80-81 181374.0 82-83 176204.0 84-85 182667.0 86-87 196639.0 88-89 216131.0 90-91 227110.0 92-93 247766.0 94-95 308254.0 96-97 748451.0 98-99 1287977.0 100-101 1.339723E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.93639229907645 #Duplication Level Percentage of deduplicated Percentage of total 1 87.14439820356101 69.66008801466785 2 8.356975608124042 13.360529612896327 3 2.3017851374849947 5.519891992145524 4 0.9356136587038643 2.9915832185010522 5 0.4562164440174315 1.8234148321133525 6 0.25160704440124987 1.2067535643881673 7 0.15202338728349987 0.8506540787169794 8 0.10104419204804739 0.646168654007675 9 0.06323458940080606 0.45492704506924686 >10 0.22911231273205523 2.861789713853505 >50 0.006001284021346037 0.3215436133650752 >100 0.0019189069910023932 0.24414530719907937 >500 2.7705261479019853E-5 0.014173766811957452 >1k 4.1525969154519454E-5 0.04433658626409163 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.494100171946028E-5 2 0.0 0.0 0.0 4.9803339064867606E-6 1.494100171946028E-5 3 0.0 9.960667812973521E-6 0.0 4.9803339064867606E-6 1.494100171946028E-5 4 0.0 4.4823005158380844E-5 0.0 1.494100171946028E-5 1.494100171946028E-5 5 0.0 5.976400687784112E-5 0.0 1.494100171946028E-5 1.494100171946028E-5 6 0.0 5.976400687784112E-5 0.0 1.494100171946028E-5 2.4901669532433802E-5 7 0.0 5.976400687784112E-5 0.0 1.494100171946028E-5 3.4862337345407325E-5 8 0.0 7.968534250378817E-5 0.0 1.494100171946028E-5 4.4823005158380844E-5 9 0.0 1.5937068500757634E-4 0.0 1.494100171946028E-5 4.9803339064867604E-5 10-11 9.960667812973521E-6 1.5937068500757634E-4 0.0 1.9921335625947042E-5 4.9803339064867604E-5 12-13 9.960667812973521E-6 1.5937068500757634E-4 0.0 2.988200343892056E-5 4.9803339064867604E-5 14-15 1.7431168672703662E-5 2.1664452493217406E-4 0.0 3.4862337345407325E-5 6.474434078432788E-5 16-17 2.4901669532433802E-5 2.1913469188541745E-4 0.0 5.229350601811098E-5 7.221484164405802E-5 18-19 2.4901669532433802E-5 2.3656586055812112E-4 0.0 8.217550945703155E-5 9.462634422324845E-5 20-21 2.988200343892056E-5 2.639576970437983E-4 0.0 1.145476798491955E-4 1.1952801375568225E-4 22-23 3.4862337345407325E-5 3.1376103610866594E-4 0.0 1.2948868156865577E-4 1.2699851461541237E-4 24-25 4.731317211162423E-5 3.6356437517353355E-4 0.0 1.5190018414784617E-4 1.2948868156865577E-4 26-27 5.4783672971354364E-5 3.73525042986507E-4 0.0 1.7929202063352338E-4 1.2948868156865577E-4 28-29 5.4783672971354364E-5 3.760152099397504E-4 0.0 3.6107420822029015E-4 1.3197884852189916E-4 30-31 5.976400687784112E-5 4.2083821509813124E-4 0.0 0.0012973769826398012 1.369591824283859E-4 32-33 6.474434078432788E-5 4.3328904986434817E-4 0.0 0.0037576619324442605 1.394493493816293E-4 34-35 6.723450773757127E-5 5.030137245551628E-4 0.0 0.006935114964782814 1.394493493816293E-4 36-37 6.972467469081465E-5 5.926597348719245E-4 0.0 0.010354114191585974 1.394493493816293E-4 38-39 6.972467469081465E-5 6.100909035446282E-4 0.0 0.015297095593774086 1.5190018414784617E-4 40-41 6.972467469081465E-5 7.047172477678766E-4 0.0 0.020185293322990842 1.5688051805433297E-4 42-43 6.972467469081465E-5 7.296189173003104E-4 0.0 0.02413469811083484 1.5937068500757634E-4 44-45 7.221484164405802E-5 8.342059293365324E-4 0.0 0.03007125612736706 1.5937068500757634E-4 46-47 7.47050085973014E-5 9.313224405130242E-4 0.0 0.035726425278182775 1.743116867270366E-4 48-49 7.47050085973014E-5 9.387929413727544E-4 0.0 0.040704269017716295 1.8178218758676677E-4 50-51 7.47050085973014E-5 0.0010259487847362725 0.0 0.045293646712543836 1.8925268844649688E-4 52-53 7.719517555054479E-5 0.0010458701203622197 0.0 0.04969128155197165 1.9672318930622705E-4 54-55 7.968534250378817E-5 0.0010583209551284366 0.0 0.05335929747409915 2.0917402407244392E-4 56-57 7.968534250378817E-5 0.0010857127916141138 0.0 0.058606079244582956 2.2162485883866085E-4 58-59 7.968534250378817E-5 0.001100653793333574 0.0 0.06423385655891299 2.29095359698391E-4 60-61 8.466567641027492E-5 0.0011305357967724946 0.0 0.0686489225670135 2.3656586055812112E-4 62-63 8.466567641027492E-5 0.0011554374663049283 0.0 0.07267552253040804 2.515068622775814E-4 64-65 8.466567641027492E-5 0.0012849261478735843 0.0 0.07679923900497909 2.5648719618406814E-4 66-67 8.466567641027492E-5 0.0012923966487333144 0.0 0.08087066197353202 2.5897736313731153E-4 68-69 8.964601031676169E-5 0.0013496704886579122 0.0 0.08523094430866118 2.6146753009055493E-4 70-71 8.964601031676169E-5 0.001374572158190346 0.0 0.08931481811198032 2.639576970437983E-4 72-73 8.964601031676169E-5 0.0013870229929565628 0.0 0.09255203515119671 2.764085318100152E-4 74-75 8.964601031676169E-5 0.0014169049963954833 0.0 0.09527129746413848 2.8387903266974534E-4 76-77 8.964601031676169E-5 0.001479159170226568 0.0 0.09803787294919189 2.8387903266974534E-4 78-79 8.964601031676169E-5 0.0015090411736654885 0.0 0.1000424573465528 2.8387903266974534E-4 80-81 9.213617727000506E-5 0.0015165116745252186 0.0 0.10065254825009742 2.988200343892056E-4 82-83 9.462634422324844E-5 0.0015264723423381922 0.0 0.10128754082317448 3.287020378281262E-4 84-85 9.462634422324844E-5 0.0015364330101511657 0.0 0.10154900835326505 3.287020378281262E-4 86-87 9.462634422324844E-5 0.001558844512730356 0.0 0.10164861503139477 3.311922047813696E-4 88 9.462634422324844E-5 0.001663431524766578 0.0 0.10166853636702072 3.486233734540732E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23295 0.0 50.613106 1 GTATCAA 42325 0.0 37.049942 1 TCAACGC 50180 0.0 30.593283 4 ATCAACG 51030 0.0 30.083694 3 CAACGCA 51745 0.0 29.636467 5 TATCAAC 53485 0.0 28.970478 2 AACGCAG 53295 0.0 28.815237 6 ACGCAGA 61855 0.0 24.813648 7 CGCAGAG 63025 0.0 24.353004 8 GTACATG 58555 0.0 21.868982 1 TACATGG 58700 0.0 21.482416 2 ACATGGG 59870 0.0 20.424997 3 GCAGAGT 75210 0.0 20.258892 9 GAGTACT 42805 0.0 19.16988 12-13 AGAGTAC 66625 0.0 18.545542 10-11 CAGAGTA 73075 0.0 18.28303 10-11 CATGGGG 44075 0.0 18.060093 4 GTGGTAT 12400 0.0 17.526382 1 GTACTTT 48190 0.0 16.992323 14-15 TGGTATC 11630 0.0 16.709927 2 >>END_MODULE