##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139244_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9194113 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.29307938677717 33.0 33.0 33.0 33.0 33.0 2 32.33699487922326 33.0 33.0 33.0 33.0 33.0 3 32.362324239434514 33.0 33.0 33.0 33.0 33.0 4 36.22742857304451 37.0 37.0 37.0 33.0 37.0 5 36.272372332165155 37.0 37.0 37.0 33.0 37.0 6 36.26117462337041 37.0 37.0 37.0 33.0 37.0 7 36.224518450012525 37.0 37.0 37.0 33.0 37.0 8 36.20962663826298 37.0 37.0 37.0 33.0 37.0 9 36.274751572011354 37.0 37.0 37.0 33.0 37.0 10-11 36.19409751653041 37.0 37.0 37.0 33.0 37.0 12-13 36.15276808105361 37.0 37.0 37.0 33.0 37.0 14-15 37.88946019045013 40.0 37.0 40.0 33.0 40.0 16-17 37.821403598150255 40.0 37.0 40.0 33.0 40.0 18-19 37.790681983134206 40.0 37.0 40.0 33.0 40.0 20-21 37.79929606359713 40.0 37.0 40.0 33.0 40.0 22-23 37.80269632951779 40.0 37.0 40.0 33.0 40.0 24-25 37.79616013652452 40.0 37.0 40.0 33.0 40.0 26-27 37.65820842613553 40.0 37.0 40.0 33.0 40.0 28-29 37.58566585592446 40.0 37.0 40.0 33.0 40.0 30-31 37.46556580084558 40.0 37.0 40.0 33.0 40.0 32-33 37.408381183312166 40.0 37.0 40.0 33.0 40.0 34-35 37.369097249672706 40.0 37.0 40.0 33.0 40.0 36-37 37.31041747725912 40.0 37.0 40.0 33.0 40.0 38-39 37.24433360418545 40.0 37.0 40.0 33.0 40.0 40-41 37.21370237411129 40.0 37.0 40.0 33.0 40.0 42-43 37.124282483234396 40.0 37.0 40.0 33.0 40.0 44-45 37.05575371673707 38.5 37.0 40.0 33.0 40.0 46-47 37.00354057508552 37.0 37.0 40.0 33.0 40.0 48-49 36.980178897723235 37.0 37.0 40.0 33.0 40.0 50-51 36.88472957003832 37.0 37.0 40.0 33.0 40.0 52-53 36.76699206138408 37.0 37.0 40.0 33.0 40.0 54-55 36.56759714288057 37.0 37.0 40.0 33.0 40.0 56-57 36.4592472489484 37.0 37.0 40.0 33.0 40.0 58-59 36.3065146015755 37.0 37.0 40.0 33.0 40.0 60-61 36.15823012991379 37.0 37.0 40.0 33.0 40.0 62-63 35.98279476806934 37.0 35.0 40.0 33.0 40.0 64-65 35.7994413324282 37.0 33.0 40.0 33.0 40.0 66-67 35.58656533314692 37.0 33.0 40.0 27.0 40.0 68-69 35.37576983461864 37.0 33.0 37.0 27.0 40.0 70-71 35.14659233206552 37.0 33.0 37.0 27.0 40.0 72-73 34.938927845167996 37.0 33.0 37.0 27.0 40.0 74-75 34.75228943591982 37.0 33.0 37.0 27.0 40.0 76-77 32.76374593648275 33.0 33.0 37.0 27.0 37.0 78-79 34.22276820902106 37.0 33.0 37.0 27.0 37.0 80-81 34.17524919761722 37.0 33.0 37.0 27.0 37.0 82-83 33.86299474910693 37.0 33.0 37.0 27.0 37.0 84-85 33.962094251190436 37.0 33.0 37.0 27.0 37.0 86-87 33.909668373019116 37.0 33.0 37.0 27.0 37.0 88-89 33.79735761412333 37.0 33.0 37.0 27.0 37.0 90-91 33.4713307355963 35.0 33.0 37.0 27.0 37.0 92-93 33.613206049245136 33.0 33.0 37.0 27.0 37.0 94-95 33.52234103765876 33.0 33.0 37.0 27.0 37.0 96-97 33.566812084984576 33.0 33.0 37.0 27.0 37.0 98-99 33.723458179483586 33.0 33.0 37.0 27.0 37.0 100 33.76649772680649 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 0.0 18 3.0 19 19.0 20 123.0 21 688.0 22 2466.0 23 7099.0 24 16145.0 25 30973.0 26 53457.0 27 83230.0 28 120359.0 29 165067.0 30 218461.0 31 283942.0 32 366259.0 33 475193.0 34 624435.0 35 857155.0 36 1362198.0 37 2470700.0 38 2010401.0 39 45738.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.70496925587058 20.168438216932945 14.144812011773187 23.981780515423292 2 14.841301167388307 21.389143248511303 41.039782739237594 22.729772844862794 3 17.95446716828475 26.438733132820968 30.557825425900248 25.048974272994034 4 12.435163674842805 18.410867910803358 38.65069963790961 30.50326877644423 5 13.55784946302052 37.49826655382634 35.52474284360003 13.419141139553103 6 29.79010590798699 37.97718170311807 18.72102289802181 13.511689490873128 7 26.170224359870275 32.63006447712792 23.369236379844363 17.83047478315744 8 24.505615713011142 36.409711301133676 21.045499440783466 18.039173545071723 9 25.625498144899694 16.448701081735788 21.16219597933982 36.763604794024694 10-11 24.275025551024086 26.66371252070064 28.758757816427128 20.302504111848144 12-13 25.14385480351785 24.375517962401783 28.691610726228767 21.789016507851603 14-15 22.25228779326576 25.468185386794612 26.55220467197764 25.727322147961985 16-17 21.852461460937015 28.663134768954873 27.047606441208632 22.436797328899484 18-19 21.92875484562785 27.657953518735308 28.806938744390028 21.60635289124682 20-21 22.798338390761188 26.77186363152833 28.766541965846752 21.663256011863727 22-23 22.55620093722755 26.781954238619416 28.5398718762277 22.121972947925332 24-25 22.321698063731034 26.949314960282077 28.749950220672034 21.979036755314855 26-27 22.196874266100746 27.00812932464805 28.717902665263566 22.07709374398764 28-29 22.18379676970594 26.983958759311243 28.722885366866375 22.109359104116443 30-31 22.530281175980008 26.712086181255014 28.550204535593203 22.207428107171776 32-33 22.402260117361916 26.866828137455496 28.52710055724092 22.203811187941668 34-35 22.532623366775965 27.04934649111122 28.403601449973703 22.014428692139113 36-37 22.563859613910676 26.918059194227062 28.248850064812103 22.26923112705016 38-39 22.218427352867135 27.19022539586242 28.38450750645028 22.206839744820165 40-41 22.469766155052266 26.938582316048958 28.35043660617019 22.24121492272858 42-43 22.35391826519201 27.10767631555254 28.076689948118105 22.461715471137346 44-45 22.34057985363632 27.200668735484562 27.93359037971389 22.525161031165222 46-47 22.589221018502677 27.121613057178852 27.657423277278546 22.631742647039925 48-49 22.64113324608051 27.348341541193182 27.432387612804515 22.578137599921792 50-51 22.58111828787023 27.383036656443405 27.471160230972675 22.564684824713694 52-53 22.816297374501023 27.31092360729362 27.38345657186064 22.489322446344715 54-55 22.799223468344504 27.23367261870781 27.31410821055194 22.652995702395742 56-57 22.82340330666145 27.511955790997916 27.052964482621476 22.611676419719153 58-59 22.622815208092035 27.497036096661027 27.349014818437382 22.53113387680955 60-61 22.742257216323917 27.522148957328458 27.168407914930874 22.56718591141675 62-63 22.734833060349644 27.590673764730507 27.225000036592988 22.44949313832686 64-65 22.80464067790751 27.428722503358433 27.171114156255005 22.595522662479055 66-67 22.832812223262483 27.499533621597827 26.985834268367174 22.681819886772516 68-69 22.838128198795122 27.39065601780587 27.085589494404843 22.68562628899416 70-71 22.81906606052782 27.23603814235239 27.10893157866846 22.83596421845133 72-73 22.80798618346285 27.307692799370027 26.98201088908803 22.902310128079094 74-75 22.657944619642567 27.370666975676627 27.058581539756116 22.912806864924686 76-77 22.84429601320609 27.34471143997761 26.92377909095032 22.887213455865986 78-79 22.61574633930153 27.418058489591296 27.049258201783115 22.91693696932406 80-81 22.772019308791254 27.289952103203024 27.047867128396703 22.890161459609022 82-83 22.908425095166127 27.157348303353007 27.20731981017822 22.726906791302646 84-85 22.80870198782222 27.187636314925 27.204037454709024 22.799624242543754 86-87 22.68361142922556 27.32251466737497 27.146925122589003 22.846948780810465 88-89 22.87918319810833 27.14657488545403 27.04512391292702 22.929118003510624 90-91 22.9112257704959 27.138620162824868 27.09757763601263 22.852576430666602 92-93 22.815827371354132 27.170418352306534 27.273059101652137 22.740695174687197 94-95 22.63302973812461 27.266701656213193 27.279675062480553 22.820593543181644 96-97 22.67767701568754 27.344550025688473 27.35315885460203 22.624614104021955 98-99 23.853366150169432 29.30067341765613 27.499061279617816 19.34689915255662 100 22.700302529732443 30.35900615546798 21.385634262852143 25.55505705194743 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2633.0 1 2237.0 2 2799.5 3 3932.5 4 5138.5 5 8328.5 6 11251.5 7 13416.5 8 15069.5 9 15122.0 10 13677.0 11 11983.0 12 12794.0 13 16932.5 14 26260.0 15 39351.0 16 50536.0 17 57269.0 18 58965.0 19 56134.5 20 51052.0 21 46061.0 22 43236.5 23 44680.5 24 50831.5 25 62100.0 26 77935.5 27 94274.5 28 111233.0 29 130102.0 30 147158.5 31 162599.0 32 178856.0 33 196013.5 34 213867.5 35 231145.0 36 250987.5 37 268719.0 38 280806.0 39 293252.0 40 306825.0 41 318537.5 42 326547.0 43 332873.0 44 340492.0 45 353225.5 46 366795.0 47 381286.0 48 392057.5 49 390773.0 50 384992.5 51 379521.5 52 361585.0 53 335240.5 54 316023.5 55 298812.0 56 280165.0 57 258026.5 58 232855.5 59 205419.0 60 175412.5 61 149974.0 62 124372.5 63 100843.0 64 83167.0 65 65666.5 66 52253.5 67 38808.0 68 25554.5 69 18522.0 70 13473.0 71 8726.0 72 5996.5 73 4349.5 74 3287.0 75 2350.5 76 1505.0 77 880.5 78 660.5 79 553.0 80 380.5 81 240.0 82 187.5 83 117.0 84 61.5 85 41.0 86 33.0 87 29.0 88 23.5 89 18.0 90 12.5 91 8.0 92 5.5 93 2.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0876525011167472E-5 10-11 0.0027680756153421215 12-13 3.643635878741103E-4 14-15 0.0034696114785624237 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 232.0 20-21 793.0 22-23 1685.0 24-25 3467.0 26-27 5172.0 28-29 8929.0 30-31 19861.0 32-33 25172.0 34-35 34750.0 36-37 48792.0 38-39 56321.0 40-41 59059.0 42-43 71662.0 44-45 84326.0 46-47 81283.0 48-49 72050.0 50-51 63396.0 52-53 62555.0 54-55 67274.0 56-57 71174.0 58-59 71056.0 60-61 69890.0 62-63 68722.0 64-65 74843.0 66-67 78656.0 68-69 76421.0 70-71 76116.0 72-73 72310.0 74-75 76492.0 76-77 72356.0 78-79 82205.0 80-81 82630.0 82-83 80817.0 84-85 83652.0 86-87 88865.0 88-89 98298.0 90-91 103514.0 92-93 111443.0 94-95 132743.0 96-97 326755.0 98-99 564159.0 100-101 5864217.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.13449520712895 #Duplication Level Percentage of deduplicated Percentage of total 1 89.72570556217563 75.49026944577129 2 7.076786603852264 11.908037372073652 3 1.7176895235821925 4.335508229674847 4 0.6397531377171994 2.153012291960537 5 0.30195517545715306 1.2702423131133809 6 0.16160856172485366 0.815811285712242 7 0.1006504433462793 0.5927721970319058 8 0.055672324395277244 0.37471703280033447 9 0.044740842000082943 0.33878233411370023 >10 0.17003918974478674 2.3141828026446225 >50 0.004307027904266573 0.24427388393476948 >100 0.0010440784026408507 0.13957720584720315 >500 4.752969731326542E-5 0.0228136053215914 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.525915006700484E-5 0.0 0.0 0.0 3 0.0 6.525915006700484E-5 0.0 0.0 0.0 4 0.0 1.3051830013400967E-4 0.0 0.0 0.0 5 0.0 1.3051830013400967E-4 0.0 0.0 0.0 6 6.525915006700484E-5 1.3051830013400967E-4 0.0 1.0876525011167472E-5 0.0 7 6.525915006700484E-5 1.4139482514517713E-4 0.0 1.0876525011167472E-5 0.0 8 6.525915006700484E-5 1.522713501563446E-4 0.0 2.1753050022334944E-5 0.0 9 6.525915006700484E-5 3.045427003126892E-4 0.0 2.1753050022334944E-5 1.0876525011167472E-5 10-11 7.069741257258858E-5 3.045427003126892E-4 0.0 2.1753050022334944E-5 1.0876525011167472E-5 12-13 7.61356750781723E-5 3.045427003126892E-4 0.0 2.1753050022334944E-5 2.1753050022334944E-5 14-15 7.61356750781723E-5 4.078696879187802E-4 0.0 2.1753050022334944E-5 2.1753050022334944E-5 16-17 9.788872510050725E-5 4.1330795042436396E-4 0.0 2.1753050022334944E-5 2.1753050022334944E-5 18-19 9.788872510050725E-5 4.350610004466989E-4 0.0 2.1753050022334944E-5 2.1753050022334944E-5 20-21 9.788872510050725E-5 4.894436255025363E-4 0.0 4.350610004466989E-5 2.1753050022334944E-5 22-23 9.788872510050725E-5 5.166349380304549E-4 0.0 6.525915006700484E-5 2.7191312527918683E-5 24-25 9.788872510050725E-5 5.601410380751248E-4 0.0 1.0332698760609098E-4 3.262957503350242E-5 26-27 9.788872510050725E-5 5.76455825591876E-4 0.0 1.957774502010145E-4 3.262957503350242E-5 28-29 9.788872510050725E-5 5.76455825591876E-4 0.0 6.145236631309622E-4 3.262957503350242E-5 30-31 9.788872510050725E-5 6.417149756588809E-4 0.0 0.0025233538025908535 3.262957503350242E-5 32-33 9.788872510050725E-5 6.417149756588809E-4 0.0 0.006830457707013172 3.262957503350242E-5 34-35 9.788872510050725E-5 7.559184882761393E-4 0.0 0.01168682612449945 3.262957503350242E-5 36-37 9.788872510050725E-5 8.701220008933977E-4 0.0 0.01850096904399587 3.262957503350242E-5 38-39 9.788872510050725E-5 9.027515759269002E-4 0.0 0.02580999385150041 4.350610004466989E-5 40-41 9.788872510050725E-5 0.0010223933510497424 0.0 0.03234678538321206 5.9820887561421094E-5 42-43 9.788872510050725E-5 0.0010604611885888285 0.0 0.039101107415147066 6.525915006700484E-5 44-45 9.788872510050725E-5 0.0012127325387451733 0.0 0.04621979303495617 7.069741257258858E-5 46-47 1.0876525011167472E-4 0.0013269360513624316 0.0 0.05234327661624346 7.61356750781723E-5 48-49 1.0876525011167472E-4 0.0013269360513624316 0.0 0.058896382935471864 9.788872510050725E-5 50-51 1.2508003762842594E-4 0.0014792074015187763 0.0 0.06525915006700483 9.788872510050725E-5 52-53 1.3051830013400967E-4 0.0015009604515411111 0.0 0.07134456581075303 1.0332698760609098E-4 54-55 1.3051830013400967E-4 0.001506398714046695 0.0 0.07676651352882002 1.0876525011167472E-4 56-57 1.359565626395934E-4 0.0015118369765522786 0.0 0.08441271061167074 1.0876525011167472E-4 58-59 1.4139482514517713E-4 0.0015118369765522786 0.0 0.09276588182024736 1.0876525011167472E-4 60-61 1.4683308765076086E-4 0.0015553430765969487 0.0 0.09859026096372756 1.0876525011167472E-4 62-63 1.522713501563446E-4 0.0015988491766416185 0.0 0.10432218964461282 1.0876525011167472E-4 64-65 1.522713501563446E-4 0.0018816388269319727 0.0 0.11001605048795898 1.0876525011167472E-4 66-67 1.6314787516751207E-4 0.0019033918769543075 0.0 0.1151878381307691 1.0876525011167472E-4 68-69 1.6314787516751207E-4 0.00193602145198781 0.0 0.12034331098606249 1.0876525011167472E-4 70-71 1.6858613767309583E-4 0.0019632127645157287 0.0 0.12520511766605436 1.0876525011167472E-4 72-73 1.7402440017867955E-4 0.00197952755203248 0.0 0.12875630308220054 1.3051830013400967E-4 74-75 1.7402440017867955E-4 0.0020447867020994847 0.0 0.13184523618537208 1.3051830013400967E-4 76-77 1.7402440017867955E-4 0.002158990214716743 0.0 0.1345861204881863 1.3051830013400967E-4 78-79 1.7402440017867955E-4 0.0021970580522558294 0.0 0.13660371587775788 1.4139482514517713E-4 80-81 1.7402440017867955E-4 0.0021970580522558294 0.0 0.1372236778033944 1.4683308765076086E-4 82-83 1.7946266268426328E-4 0.002202496314761413 0.0 0.13775662752894163 1.522713501563446E-4 84-85 1.957774502010145E-4 0.0022188111022781645 0.0 0.13801222586670406 1.522713501563446E-4 86-87 2.0121571270659825E-4 0.002240564152300499 0.0 0.13818625026688272 1.522713501563446E-4 88 2.1753050022334944E-4 0.002349329402412174 0.0 0.1381971267918939 1.6314787516751207E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12390 0.0 51.657322 1 GTATCAA 22650 0.0 37.2205 1 TCAACGC 27840 0.0 29.732576 4 ATCAACG 28220 0.0 29.392406 3 CAACGCA 28510 0.0 29.034794 5 TATCAAC 28920 0.0 28.88657 2 AACGCAG 29165 0.0 28.411842 6 ACGCAGA 33005 0.0 25.09337 7 CGCAGAG 35980 0.0 23.042389 8 GTACATG 28195 0.0 22.218248 1 GTGGTAT 5615 0.0 21.935028 1 TACATGG 28290 0.0 21.51311 2 ACATGGG 28540 0.0 20.937754 3 GCAGAGT 39315 0.0 20.797201 9 TGGTATC 5535 0.0 20.410513 2 CTTATAC 5710 0.0 20.23125 1 GAGTACT 23670 0.0 19.702547 12-13 CAGAGTA 37975 0.0 19.031218 10-11 AGAGTAC 35225 0.0 18.834862 10-11 CATGGGG 21700 0.0 18.769333 4 >>END_MODULE