##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139243_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8742546 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30488784388438 33.0 33.0 33.0 33.0 33.0 2 32.35117275905669 33.0 33.0 33.0 33.0 33.0 3 32.37976809043956 33.0 33.0 33.0 33.0 33.0 4 36.246844454693175 37.0 37.0 37.0 33.0 37.0 5 36.29456647983322 37.0 37.0 37.0 33.0 37.0 6 36.27827580203753 37.0 37.0 37.0 33.0 37.0 7 36.241753489200974 37.0 37.0 37.0 33.0 37.0 8 36.22716586220993 37.0 37.0 37.0 33.0 37.0 9 36.290709136674835 37.0 37.0 37.0 33.0 37.0 10-11 36.21192585089057 37.0 37.0 37.0 33.0 37.0 12-13 36.1704895804952 37.0 37.0 37.0 33.0 37.0 14-15 37.92543430712289 40.0 37.0 40.0 33.0 40.0 16-17 37.85741127355807 40.0 37.0 40.0 33.0 40.0 18-19 37.82454842102061 40.0 37.0 40.0 33.0 40.0 20-21 37.83355968704198 40.0 37.0 40.0 33.0 40.0 22-23 37.837505032821625 40.0 37.0 40.0 33.0 40.0 24-25 37.83312175604759 40.0 37.0 40.0 33.0 40.0 26-27 37.69902399796554 40.0 37.0 40.0 33.0 40.0 28-29 37.627439933363185 40.0 37.0 40.0 33.0 40.0 30-31 37.50465461856686 40.0 37.0 40.0 33.0 40.0 32-33 37.449967361548914 40.0 37.0 40.0 33.0 40.0 34-35 37.41747217915495 40.0 37.0 40.0 33.0 40.0 36-37 37.3566767451088 40.0 37.0 40.0 33.0 40.0 38-39 37.29726201311841 40.0 37.0 40.0 33.0 40.0 40-41 37.26133816685327 40.0 37.0 40.0 33.0 40.0 42-43 37.17110642446788 40.0 37.0 40.0 33.0 40.0 44-45 37.10449679883638 40.0 37.0 40.0 33.0 40.0 46-47 37.04775952893526 37.0 37.0 40.0 33.0 40.0 48-49 37.02257355355559 37.0 37.0 40.0 33.0 40.0 50-51 36.9288601906138 37.0 37.0 40.0 33.0 40.0 52-53 36.80905882507042 37.0 37.0 40.0 33.0 40.0 54-55 36.61008944492555 37.0 37.0 40.0 33.0 40.0 56-57 36.50120903901211 37.0 37.0 40.0 33.0 40.0 58-59 36.34505973834477 37.0 37.0 40.0 33.0 40.0 60-61 36.194728505954686 37.0 37.0 40.0 33.0 40.0 62-63 36.01571920067184 37.0 35.0 40.0 33.0 40.0 64-65 35.82929376148186 37.0 33.0 40.0 33.0 40.0 66-67 35.61781980607343 37.0 33.0 40.0 27.0 40.0 68-69 35.40443840659792 37.0 33.0 37.0 27.0 40.0 70-71 35.17557328890112 37.0 33.0 37.0 27.0 40.0 72-73 34.96449749502787 37.0 33.0 37.0 27.0 40.0 74-75 34.7744351643656 37.0 33.0 37.0 27.0 40.0 76-77 32.79635740821937 33.0 33.0 37.0 27.0 37.0 78-79 34.23836677181272 37.0 33.0 37.0 27.0 37.0 80-81 34.17953687710886 37.0 33.0 37.0 27.0 37.0 82-83 33.85502219112199 37.0 33.0 37.0 27.0 37.0 84-85 33.96376947200724 37.0 33.0 37.0 27.0 37.0 86-87 33.91727819822161 37.0 33.0 37.0 27.0 37.0 88-89 33.80446611381771 37.0 33.0 37.0 27.0 37.0 90-91 33.46841364029089 35.0 33.0 37.0 27.0 37.0 92-93 33.612017003974614 33.0 33.0 37.0 27.0 37.0 94-95 33.521095032023226 33.0 33.0 37.0 27.0 37.0 96-97 33.56484669264803 33.0 33.0 37.0 27.0 37.0 98-99 33.72921617997759 33.0 33.0 37.0 27.0 37.0 100 33.76385400426158 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 1.0 19 22.0 20 107.0 21 576.0 22 2208.0 23 6453.0 24 14597.0 25 28624.0 26 49701.0 27 77661.0 28 112550.0 29 155095.0 30 206032.0 31 268624.0 32 346930.0 33 449492.0 34 592898.0 35 815647.0 36 1293663.0 37 2366909.0 38 1916704.0 39 38051.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.912310212608546 20.028707884408043 14.049397052071559 24.00958485091185 2 14.907808320368002 21.29067436419551 41.07289798646756 22.72861932896893 3 18.04593307258549 26.34520882132047 30.311364675690584 25.297493430403456 4 12.433460458772535 18.323804072635134 38.60249634374243 30.6402391248499 5 13.624475067102878 37.53286514020058 35.395524370131994 13.44713542256455 6 29.985887406254424 37.865605740021266 18.70909229416694 13.439414559557363 7 26.481599296131815 32.50946577804681 23.260558194374955 17.74837673144642 8 24.63396818272389 36.49810936082007 20.91809411125775 17.9498283451983 9 25.784200015098584 16.411306096397617 21.007693416329808 36.79680047217399 10-11 24.389556048561676 26.656646403085695 28.628579370267616 20.32521817808502 12-13 25.281138728162706 24.321627657820386 28.574740788574193 21.822492825442716 14-15 22.341541839474438 25.421686230179237 26.416858812988984 25.81991311735734 16-17 21.938677817651747 28.60095903413033 26.935488815271892 22.524874332946034 18-19 21.972849785405764 27.638659264703897 28.69437575735947 21.694115192530873 20-21 22.91338612399942 26.763051231257297 28.642417551092965 21.68114509365032 22-23 22.6697058195843 26.767883294514522 28.396854843954557 22.165556041946623 24-25 22.44475696416883 26.908665331824373 28.58781584622992 22.058761857776876 26-27 22.313700933523556 26.987105050202924 28.55516844512156 22.14402557115196 28-29 22.306547796297092 27.038595838605552 28.5188386522792 22.136017712818155 30-31 22.712725826453635 26.716244932485594 28.436661737999724 22.134367503061046 32-33 22.426261233608223 26.91820553107298 28.336481503273976 22.31905173204482 34-35 22.619661160583725 27.007342595343204 28.283632356700217 22.089363887372855 36-37 22.676107265017727 26.911025905685715 28.11931165349446 22.293555175802098 38-39 22.336281351105097 27.184311222638975 28.256394546443786 22.22301287981214 40-41 22.562933686907314 26.933668002527174 28.206742053979468 22.296656256586044 42-43 22.43354496517926 27.094352096020373 27.916927912473312 22.555175026327063 44-45 22.433695340960128 27.173664162415516 27.789750501290673 22.602889995333683 46-47 22.620214178011615 27.1228621036353 27.55042051221644 22.70650320613665 48-49 22.704170517831482 27.349481918567143 27.33614917245946 22.610198391141914 50-51 22.656892657845653 27.384425018114488 27.33719271547923 22.621489608560626 52-53 22.889496124559653 27.321665689200987 27.23854051384169 22.55029767239767 54-55 22.90610014581653 27.248457290253697 27.158848475256136 22.686594088673633 56-57 22.868247137677038 27.478294271948382 26.976294168790492 22.677164421584088 58-59 22.703685880027752 27.456930205642777 27.238135376876706 22.60124853745277 60-61 22.813144680267385 27.494473822580982 27.050363792724696 22.642017704426934 62-63 22.789344640663504 27.51359603873484 27.18696318979717 22.510096130804484 64-65 22.87846619220292 27.362782576524395 27.10570338591888 22.653047845353804 66-67 22.919661951310598 27.45613340802494 26.87991812611151 22.744286514552954 68-69 22.841304156916227 27.40909490084254 27.015706603437323 22.73389433880391 70-71 22.859950001680158 27.261125433682153 27.02682180368535 22.852102760952338 72-73 22.83337679403443 27.372387900777216 26.866284698433844 22.927950606754507 74-75 22.726901614402387 27.38575567191544 26.947926158374948 22.939416555307222 76-77 22.859904221806183 27.37244846165025 26.8328746388148 22.934772677728766 78-79 22.658477696455066 27.42846550635525 26.96222685601982 22.95082994116987 80-81 22.79039863449761 27.40850474944785 26.9528589220048 22.84823769404974 82-83 22.947267563455785 27.25658769107137 27.060349534835005 22.73579521063784 84-85 22.822987218095122 27.361402324589264 27.033231870708217 22.78237858660739 86-87 22.67853742898366 27.491387430150432 27.0249866662051 22.805088474660813 88-89 22.871789950979576 27.335773145515844 26.910548196613775 22.881888706890802 90-91 22.89583028670304 27.38802835386098 26.91083814898248 22.805303210453495 92-93 22.827143254936477 27.400686313986867 27.094036157331086 22.67813427374557 94-95 22.607366634677295 27.57231692904401 27.06139049332219 22.758925942956505 96-97 22.633891265504303 27.651664926667134 27.16069820406382 22.553745603764742 98-99 23.793941850694537 29.551079221699972 27.356341740409107 19.298637187196388 100 22.614123960478285 30.703649480183177 21.25581903135363 25.426407527984907 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3241.0 1 2650.5 2 2897.0 3 3951.5 4 5071.5 5 7976.0 6 10718.0 7 12709.5 8 14057.0 9 13970.0 10 12748.5 11 11325.0 12 11877.0 13 15293.0 14 23621.5 15 35420.5 16 45577.0 17 51893.5 18 53458.5 19 50579.0 20 45357.0 21 39962.0 22 36573.0 23 37136.5 24 41823.5 25 51254.5 26 63968.0 27 77498.5 28 92797.0 29 110277.5 30 127412.5 31 144283.0 32 163197.5 33 181966.0 34 199516.5 35 217141.5 36 236159.5 37 253188.0 38 266541.0 39 279589.0 40 292180.5 41 302317.0 42 308783.5 43 315934.5 44 323981.0 45 335145.5 46 348038.5 47 362811.5 48 370573.5 49 367142.0 50 363799.5 51 358693.0 52 339514.5 53 314205.5 54 297356.0 55 281745.5 56 263609.5 57 240557.5 58 215972.5 59 190290.5 60 162266.5 61 139415.5 62 116129.0 63 94687.5 64 78853.5 65 62288.5 66 49433.5 67 36761.5 68 24119.0 69 17393.5 70 12580.0 71 8102.0 72 5564.0 73 3935.5 74 2960.5 75 2148.5 76 1401.5 77 788.5 78 594.0 79 481.0 80 317.5 81 208.0 82 172.5 83 119.5 84 72.5 85 44.5 86 31.0 87 24.0 88 15.5 89 10.0 90 6.5 91 4.0 92 3.0 93 2.5 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 6.862989339718659E-5 10-11 0.0029854003627776166 12-13 2.3448546910705416E-4 14-15 0.003357145618679044 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 191.0 20-21 784.0 22-23 1478.0 24-25 3054.0 26-27 4199.0 28-29 7205.0 30-31 15408.0 32-33 19152.0 34-35 27232.0 36-37 38327.0 38-39 44818.0 40-41 47749.0 42-43 58617.0 44-45 69728.0 46-47 67683.0 48-49 60210.0 50-51 52311.0 52-53 51044.0 54-55 54870.0 56-57 58077.0 58-59 58980.0 60-61 58444.0 62-63 57204.0 64-65 61494.0 66-67 64721.0 68-69 65323.0 70-71 64626.0 72-73 62466.0 74-75 65855.0 76-77 61108.0 78-79 70704.0 80-81 72257.0 82-83 70232.0 84-85 72760.0 86-87 78072.0 88-89 85799.0 90-91 90643.0 92-93 99771.0 94-95 125753.0 96-97 314156.0 98-99 552803.0 100-101 5807238.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.76735503339036 #Duplication Level Percentage of deduplicated Percentage of total 1 89.81575893082677 76.13444324882794 2 7.082608691493755 12.00748011028855 3 1.7112854112625493 4.351834140598617 4 0.6256932902447998 2.121534611047644 5 0.2865774868538217 1.2146207786357328 6 0.14433808188928693 0.7341094459408652 7 0.09445695826372785 0.5604806561560888 8 0.059347329683692676 0.40245729324649937 9 0.03851169546819606 0.2938081106421347 >10 0.13700819337799797 1.8541261178952513 >50 0.0035347035239964427 0.20326770717993778 >100 8.32788436054202E-4 0.09847482308377822 >500 4.643867536155521E-5 0.023362956456960078 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.1438315566197764E-5 0.0 0.0 0.0 4 0.0 3.4314946698593295E-5 0.0 0.0 0.0 5 0.0 3.4314946698593295E-5 0.0 0.0 0.0 6 2.2876631132395527E-5 3.4314946698593295E-5 0.0 0.0 1.1438315566197764E-5 7 2.2876631132395527E-5 3.4314946698593295E-5 0.0 1.1438315566197764E-5 1.1438315566197764E-5 8 2.2876631132395527E-5 3.4314946698593295E-5 0.0 1.1438315566197764E-5 1.1438315566197764E-5 9 2.2876631132395527E-5 1.258214712281754E-4 0.0 3.4314946698593295E-5 1.1438315566197764E-5 10-11 2.2876631132395527E-5 1.258214712281754E-4 0.0 3.4314946698593295E-5 2.2876631132395527E-5 12-13 2.2876631132395527E-5 1.258214712281754E-4 0.0 3.4314946698593295E-5 4.0034104481692175E-5 14-15 2.2876631132395527E-5 1.94451364625362E-4 0.0 3.4314946698593295E-5 4.5753262264791055E-5 16-17 5.719157783098882E-5 1.94451364625362E-4 0.0 3.4314946698593295E-5 6.29107356140877E-5 18-19 5.719157783098882E-5 2.0588968019155977E-4 0.0 3.4314946698593295E-5 8.006820896338435E-5 20-21 5.719157783098882E-5 2.287663113239553E-4 0.0 3.4314946698593295E-5 1.1438315566197764E-4 22-23 5.719157783098882E-5 2.287663113239553E-4 0.0 5.147242004788994E-5 1.1438315566197764E-4 24-25 5.719157783098882E-5 2.802387313718452E-4 0.0 6.862989339718659E-5 1.315406290112743E-4 26-27 5.719157783098882E-5 2.9739620472114185E-4 0.0 1.5441726014366983E-4 1.3725978679437318E-4 28-29 5.719157783098882E-5 3.031153625042408E-4 0.0 5.147242004788994E-4 1.3725978679437318E-4 30-31 6.29107356140877E-5 3.7746441368452624E-4 0.0 0.0018758837528564335 1.4297894457747205E-4 32-33 6.862989339718659E-5 3.7746441368452624E-4 0.0 0.005124365373656598 1.601364179267687E-4 34-35 6.862989339718659E-5 4.6325178043100945E-4 0.0 0.009533836024425837 1.601364179267687E-4 36-37 6.862989339718659E-5 5.261625160450971E-4 0.0 0.015567547485595159 1.601364179267687E-4 38-39 6.862989339718659E-5 5.661966205267894E-4 0.0 0.021950127571533508 1.601364179267687E-4 40-41 6.862989339718659E-5 6.748606184056681E-4 0.0 0.029865441943342362 1.601364179267687E-4 42-43 6.862989339718659E-5 6.920180917549647E-4 0.0 0.0352872035217201 1.601364179267687E-4 44-45 6.862989339718659E-5 7.377713540197558E-4 0.0 0.043271147786926145 1.601364179267687E-4 46-47 6.862989339718659E-5 7.663671429352502E-4 0.0 0.04937920829927575 1.658555757098676E-4 48-49 6.862989339718659E-5 7.77805458501448E-4 0.0 0.05573319259629861 1.8301304905916422E-4 50-51 8.578736674648324E-5 8.750311408141289E-4 0.0 0.061435192906048194 1.8301304905916422E-4 52-53 9.150652452958211E-5 8.807502985972278E-4 0.0 0.06698849511343721 2.0588968019155977E-4 54-55 9.150652452958211E-5 9.093460875127222E-4 0.0 0.07178114933567406 2.287663113239553E-4 56-57 9.150652452958211E-5 9.265035608620189E-4 0.0 0.07799215468811946 2.4592378467325194E-4 58-59 9.150652452958211E-5 9.379418764282166E-4 0.0 0.08409449604268596 2.6880041580564743E-4 60-61 1.0294484009577988E-4 9.608185075606122E-4 0.0 0.08866410311138197 2.7451957358874636E-4 62-63 1.1438315566197764E-4 9.951334542592056E-4 0.0 0.09267895187511739 2.7451957358874636E-4 64-65 1.1438315566197764E-4 0.0011323932410535788 0.0 0.0972142439971148 2.7451957358874636E-4 66-67 1.315406290112743E-4 0.0011838656611014686 0.0 0.10160655717453473 2.859578891549441E-4 68-69 1.4297894457747205E-4 0.0012010231344507653 0.0 0.10627910908332652 3.2599199363663627E-4 70-71 1.4869810236057093E-4 0.001218180607800062 0.0 0.11053416247395209 3.488686247690318E-4 72-73 1.7157473349296647E-4 0.0012238997655831607 0.0 0.11373689083248748 4.0034104481692173E-4 74-75 1.7157473349296647E-4 0.0012639338700648531 0.0 0.11627619688818337 4.0034104481692173E-4 76-77 1.7729389127606535E-4 0.0013096871323296441 0.0 0.11858101747477222 4.0034104481692173E-4 78-79 1.8301304905916422E-4 0.001315406290112743 0.0 0.12009087512951033 4.0034104481692173E-4 80-81 1.8301304905916422E-4 0.0013382829212451384 0.0 0.12057700354107373 4.1749851816621835E-4 82-83 1.8301304905916422E-4 0.001349721236811336 0.0 0.12097734458589066 4.3465599151551503E-4 84-85 1.8301304905916422E-4 0.0013668787101606327 0.0 0.12118323426608221 4.3465599151551503E-4 86-87 1.8301304905916422E-4 0.001406912814642325 0.0 0.12123470668613011 4.3465599151551503E-4 88 1.8301304905916422E-4 0.0014641043924733138 0.0 0.12123470668613011 4.4609430708171283E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11010 0.0 54.906334 1 GTATCAA 20335 0.0 38.472767 1 TCAACGC 25410 0.0 30.432972 4 ATCAACG 25725 0.0 30.01011 3 CAACGCA 26195 0.0 29.474358 5 TATCAAC 26700 0.0 29.010994 2 AACGCAG 26965 0.0 28.696577 6 ACGCAGA 31120 0.0 24.892815 7 CGCAGAG 34155 0.0 22.680979 8 GTACATG 27800 0.0 21.946625 1 TACATGG 27810 0.0 21.412329 2 GTGGTAT 4780 0.0 20.987984 1 GCAGAGT 36850 0.0 20.778131 9 ACATGGG 28205 0.0 20.685017 3 GAGTACT 21570 0.0 19.533642 12-13 AGAGTAC 33375 0.0 19.019035 10-11 CAGAGTA 35770 0.0 18.97961 10-11 TGGTATC 4770 0.0 18.955868 2 CATGGGG 20880 0.0 18.930187 4 TATATAC 10750 0.0 18.664661 3 >>END_MODULE