##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139242_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8747516 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.28466904204576 33.0 33.0 33.0 33.0 33.0 2 32.32988759323218 33.0 33.0 33.0 33.0 33.0 3 32.35536625483166 33.0 33.0 33.0 33.0 33.0 4 36.217462420188774 37.0 37.0 37.0 33.0 37.0 5 36.26535384445138 37.0 37.0 37.0 33.0 37.0 6 36.252416114471814 37.0 37.0 37.0 33.0 37.0 7 36.215471112027686 37.0 37.0 37.0 33.0 37.0 8 36.2009177233857 37.0 37.0 37.0 33.0 37.0 9 36.26776035619712 37.0 37.0 37.0 33.0 37.0 10-11 36.18649637222727 37.0 37.0 37.0 33.0 37.0 12-13 36.14292943276698 37.0 37.0 37.0 33.0 37.0 14-15 37.873521980411354 40.0 37.0 40.0 33.0 40.0 16-17 37.80419327040957 40.0 37.0 40.0 33.0 40.0 18-19 37.76992148399614 40.0 37.0 40.0 33.0 40.0 20-21 37.77728736445103 40.0 37.0 40.0 33.0 40.0 22-23 37.78186691036852 40.0 37.0 40.0 33.0 40.0 24-25 37.77693329989653 40.0 37.0 40.0 33.0 40.0 26-27 37.636527113265885 40.0 37.0 40.0 33.0 40.0 28-29 37.559532227409605 40.0 37.0 40.0 33.0 40.0 30-31 37.438565078607425 40.0 37.0 40.0 33.0 40.0 32-33 37.37990231254014 40.0 37.0 40.0 33.0 40.0 34-35 37.345287467116485 40.0 37.0 40.0 33.0 40.0 36-37 37.284252151859164 40.0 37.0 40.0 33.0 40.0 38-39 37.216880591059564 40.0 37.0 40.0 33.0 40.0 40-41 37.184042575707025 40.0 37.0 40.0 33.0 40.0 42-43 37.0939091666106 40.0 37.0 40.0 33.0 40.0 44-45 37.02517604438998 37.0 37.0 40.0 33.0 40.0 46-47 36.96849216490634 37.0 37.0 40.0 33.0 40.0 48-49 36.94114588186814 37.0 37.0 40.0 33.0 40.0 50-51 36.84274648440507 37.0 37.0 40.0 33.0 40.0 52-53 36.71946025968606 37.0 37.0 40.0 33.0 40.0 54-55 36.519675706459026 37.0 37.0 40.0 33.0 40.0 56-57 36.410778688454755 37.0 37.0 40.0 33.0 40.0 58-59 36.25492253406343 37.0 37.0 40.0 33.0 40.0 60-61 36.10428858839592 37.0 37.0 40.0 33.0 40.0 62-63 35.9260956256915 37.0 33.0 40.0 33.0 40.0 64-65 35.74161740718729 37.0 33.0 40.0 27.0 40.0 66-67 35.53138619032124 37.0 33.0 38.5 27.0 40.0 68-69 35.31775489776214 37.0 33.0 37.0 27.0 40.0 70-71 35.088814804786836 37.0 33.0 37.0 27.0 40.0 72-73 34.88115583063018 37.0 33.0 37.0 27.0 40.0 74-75 34.69672441209137 37.0 33.0 37.0 27.0 40.0 76-77 32.70487562066671 33.0 33.0 37.0 27.0 37.0 78-79 34.169429962267486 37.0 33.0 37.0 27.0 37.0 80-81 34.12239844661788 37.0 33.0 37.0 27.0 37.0 82-83 33.808548073750416 37.0 33.0 37.0 27.0 37.0 84-85 33.90994122469718 37.0 33.0 37.0 27.0 37.0 86-87 33.86231726310825 37.0 33.0 37.0 27.0 37.0 88-89 33.751788060346115 37.0 33.0 37.0 27.0 37.0 90-91 33.42469471318017 33.0 33.0 37.0 27.0 37.0 92-93 33.566888075342625 33.0 33.0 37.0 27.0 37.0 94-95 33.48129838116235 33.0 33.0 37.0 27.0 37.0 96-97 33.52462339355427 33.0 33.0 37.0 27.0 37.0 98-99 33.68249041356341 33.0 33.0 37.0 27.0 37.0 100 33.72557682762192 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 0.0 17 1.0 18 4.0 19 22.0 20 133.0 21 671.0 22 2525.0 23 7116.0 24 16094.0 25 30684.0 26 52549.0 27 81813.0 28 117100.0 29 161096.0 30 212776.0 31 274818.0 32 353702.0 33 457005.0 34 600469.0 35 824781.0 36 1309018.0 37 2344013.0 38 1859864.0 39 41260.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.7460453916289 20.0992830421802 14.142037579582592 24.01263398660831 2 14.924362527602122 21.280544099604963 40.90943074582544 22.885662626967473 3 18.049672615631685 26.24445614046319 30.415960370921297 25.28991087298383 4 12.52853953053644 18.332953034895848 38.32084445458573 30.817662979981975 5 13.707022656488995 37.47522153717696 35.32408514600031 13.493670660333745 6 30.12984486110114 37.695284009769175 18.63454722460639 13.540323904523296 7 26.520180128850292 32.52830860783793 23.1226670519951 17.828844211316675 8 24.73363866953773 36.33448627015944 20.905077510003984 18.026797550298852 9 25.781316358146594 16.399586945455237 20.996219153946956 36.82287754245121 10-11 24.44577425951568 26.584429754363885 28.554209278163828 20.415586707956606 12-13 25.322669850514767 24.298889989649595 28.49926824689974 21.8791719129359 14-15 22.38469479446041 25.403522490574147 26.32171135515055 25.890071359814893 16-17 22.01214607666908 28.569853430390985 26.84461508844339 22.573385404496545 18-19 22.092037328082622 27.548797853013358 28.57230555508558 21.786859263818435 20-21 22.99503288280059 26.705342989228694 28.548525538559748 21.751098589410965 22-23 22.75259666364323 26.70403139583955 28.298622921894456 22.244749018622755 24-25 22.484470898932354 26.90018053716497 28.530270110406036 22.08507845349664 26-27 22.3741618436134 26.917167964446126 28.50196800709906 22.206702184841415 28-29 22.371455724202782 26.911439476203803 28.491375069195378 22.22572973039804 30-31 22.753048222322754 26.633806194458774 28.421445297312875 22.19170028590559 32-33 22.5166049961474 26.850659552381746 28.265578434755888 22.367157016714966 34-35 22.64418804261474 26.954112368141196 28.269501755757602 22.132197833486458 36-37 22.80023678187371 26.834776482809513 28.013354331319952 22.351632403996827 38-39 22.397402326164702 27.109781369959613 28.17043975203938 22.32237655183631 40-41 22.640747673588553 26.85624081794893 28.15785218947959 22.345159318982923 42-43 22.493679012029567 27.04646408457888 27.873582237326417 22.58627466606514 44-45 22.4603675940494 27.10531196564353 27.732375046914775 22.701945393392293 46-47 22.73043119534163 27.036629410094825 27.464156109244946 22.768783285318595 48-49 22.764876157914454 27.312269475908764 27.261338728540984 22.661515637635798 50-51 22.704564079265264 27.320329905962122 27.30368538952354 22.671420625249077 52-53 22.95321417756045 27.258913930959235 27.209604681892735 22.57826720958758 54-55 22.947064074315644 27.185742171893157 27.11182046640247 22.755373287388732 56-57 22.964018304247038 27.454448625166545 26.89041072959697 22.69112234098945 58-59 22.710098255728155 27.453869635354188 27.186286987780427 22.64974512113723 60-61 22.88930346275211 27.486003404654756 26.972928853405893 22.651764279187237 62-63 22.85969273921081 27.508594252939528 27.092191901378797 22.539521106470858 64-65 22.951821152512704 27.363783237682238 27.018181720289096 22.666213889515966 66-67 22.97250679239614 27.450377044787178 26.79442897354042 22.782687189276263 68-69 22.89215688195629 27.34852709739223 26.943078317265744 22.816237703385735 70-71 22.92474350221438 27.219023730859615 26.94513458813151 22.911098178794497 72-73 22.887403603079377 27.306665210823223 26.822801437822946 22.983129748274457 74-75 22.770269312137064 27.332699674583992 26.876091712191148 23.020939301087793 76-77 22.92822697919325 27.34071750151551 26.753126929593435 22.9779285896978 78-79 22.710532618665898 27.401413139158333 26.884395129360723 23.00365911281505 80-81 22.857929031591066 27.311650836071085 26.882209725526323 22.948210406811523 82-83 23.00664725929566 27.205451384633733 26.99697174103765 22.790929615032958 84-85 22.876896649855574 27.298255015185102 26.992732305757063 22.832116029202265 86-87 22.725230048620052 27.442900322728892 26.940043009494946 22.89182661915611 88-89 22.90413072980013 27.275737801427784 26.831868274257314 22.988263194514765 90-91 22.926382485290453 27.314394124544254 26.85965847824 22.89956491192529 92-93 22.856461668477387 27.366013887902024 27.01760221611102 22.759922227509563 94-95 22.646653403962716 27.490562311239575 27.043042943241186 22.819741341556522 96-97 22.6823625279423 27.54602185228048 27.108924904701777 22.662690715075453 98-99 23.885245619740285 29.506735984265887 27.210862283409682 19.397156112584145 100 22.70464515699909 30.58279699662112 21.14745022423614 25.56510762214365 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3428.0 1 2850.5 2 3140.5 3 4148.0 4 5148.5 5 7877.0 6 10460.0 7 12582.0 8 14315.5 9 14488.0 10 13169.5 11 11500.5 12 11831.0 13 15016.5 14 23306.5 15 35309.5 16 45432.0 17 51429.0 18 52771.5 19 50051.0 20 45500.5 21 40808.5 22 37659.5 23 38670.0 24 44068.5 25 53692.0 26 66738.5 27 81116.5 28 96581.0 29 113709.0 30 130106.0 31 145877.5 32 163325.5 33 181245.0 34 198585.0 35 215072.0 36 233450.5 37 250648.5 38 263392.0 39 276660.0 40 289973.0 41 301094.5 42 308474.0 43 314443.0 44 322951.5 45 336048.0 46 350109.0 47 366035.5 48 373763.0 49 369981.5 50 367455.5 51 363522.5 52 346024.5 53 319555.5 54 301175.5 55 286358.5 56 269005.5 57 247430.0 58 223533.0 59 197405.5 60 168401.0 61 144868.5 62 120874.0 63 98318.5 64 82066.0 65 65653.5 66 52800.0 67 39428.0 68 25976.5 69 18793.0 70 13631.0 71 8873.0 72 6160.0 73 4446.5 74 3355.0 75 2500.0 76 1639.5 77 925.0 78 688.0 79 575.5 80 402.5 81 266.5 82 202.0 83 118.0 84 54.5 85 33.5 86 27.0 87 23.5 88 19.5 89 14.5 90 10.0 91 7.5 92 5.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 3.42954502741121E-5 10-11 0.0030637268911540144 12-13 3.42954502741121E-4 14-15 0.0033838177603790604 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 235.0 20-21 801.0 22-23 1662.0 24-25 3469.0 26-27 4502.0 28-29 7468.0 30-31 15776.0 32-33 20063.0 34-35 28289.0 36-37 39886.0 38-39 47034.0 40-41 50088.0 42-43 61519.0 44-45 73673.0 46-47 71479.0 48-49 63946.0 50-51 57422.0 52-53 56837.0 54-55 62293.0 56-57 65101.0 58-59 66980.0 60-61 65956.0 62-63 65203.0 64-65 70625.0 66-67 74131.0 68-69 73358.0 70-71 72536.0 72-73 69526.0 74-75 72749.0 76-77 69783.0 78-79 79252.0 80-81 80272.0 82-83 78110.0 84-85 79953.0 86-87 86568.0 88-89 94433.0 90-91 98435.0 92-93 107296.0 94-95 131267.0 96-97 316444.0 98-99 540229.0 100-101 5622867.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.71881145066143 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99854725431355 76.24569955671633 2 6.955492032771329 11.785220361418643 3 1.6511835826260712 4.1965893182077725 4 0.6059581378180933 2.0534421289921982 5 0.2727434923434641 1.155325225112043 6 0.154160593006752 0.7836181327236708 7 0.0947839870962293 0.5620990711943163 8 0.05977179451261702 0.4051036311505665 9 0.044369392287300115 0.3383029961431389 >10 0.1583615648125807 2.1341657169667045 >50 0.003704657110438008 0.21558820685884617 >100 8.9961578921846E-4 0.11320535792595089 >500 2.3895512368995248E-5 0.011640296589708677 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.1431816758037367E-5 0.0 4 0.0 6.85909005482242E-5 0.0 1.1431816758037367E-5 0.0 5 0.0 1.028863508223363E-4 0.0 2.2863633516074735E-5 0.0 6 0.0 1.028863508223363E-4 0.0 3.42954502741121E-5 0.0 7 0.0 1.028863508223363E-4 0.0 3.42954502741121E-5 0.0 8 0.0 1.028863508223363E-4 0.0 4.572726703214947E-5 0.0 9 0.0 1.9434088488663525E-4 0.0 5.715908379018684E-5 0.0 10-11 0.0 1.9434088488663525E-4 0.0 7.430680892724289E-5 0.0 12-13 0.0 2.0005679326565393E-4 0.0 1.028863508223363E-4 5.715908379018684E-6 14-15 0.0 3.200908692250463E-4 0.0 1.028863508223363E-4 2.2863633516074735E-5 16-17 0.0 3.3152268598308365E-4 0.0 1.028863508223363E-4 4.572726703214947E-5 18-19 0.0 3.601022278781771E-4 0.0 1.028863508223363E-4 5.715908379018684E-5 20-21 0.0 4.0011358653130785E-4 0.0 1.371818010964484E-4 5.715908379018684E-5 22-23 0.0 4.3440903680541995E-4 0.0 1.5432952623350445E-4 5.715908379018684E-5 24-25 0.0 4.629885787005134E-4 0.0 2.0005679326565393E-4 5.715908379018684E-5 26-27 0.0 4.915681205956068E-4 0.0 2.457840602978034E-4 5.715908379018684E-5 28-29 0.0 4.915681205956068E-4 0.0 3.772499530152331E-4 8.002271730626158E-5 30-31 0.0 6.173181049340178E-4 0.0 9.659885160541576E-4 8.002271730626158E-5 32-33 1.1431816758037367E-5 6.230340133130365E-4 0.0 0.0028751019146463982 8.002271730626158E-5 34-35 1.1431816758037367E-5 6.973408222402794E-4 0.0 0.005681612928744572 9.145453406429894E-5 36-37 1.1431816758037367E-5 7.659317227885036E-4 0.0 0.008470976217705688 9.145453406429894E-5 38-39 1.714772513705605E-5 7.830794479255596E-4 0.0 0.0124206689076076 9.145453406429894E-5 40-41 2.2863633516074735E-5 8.573862568528025E-4 0.0 0.016970531977306472 9.145453406429894E-5 42-43 2.2863633516074735E-5 8.85965798747896E-4 0.0 0.021217451902917354 9.145453406429894E-5 44-45 2.857954189509342E-5 0.0010002839663282696 0.0 0.028373769193448747 9.145453406429894E-5 46-47 3.42954502741121E-5 0.0010974544087715872 0.0 0.034061098030572334 9.717044244331763E-5 48-49 3.42954502741121E-5 0.0011260339506666806 0.0 0.03990847230230845 1.028863508223363E-4 50-51 3.42954502741121E-5 0.0012174884847309798 0.0 0.04591589200865709 1.028863508223363E-4 52-53 3.42954502741121E-5 0.0012232043931099984 0.0 0.05200333443231198 1.028863508223363E-4 54-55 3.42954502741121E-5 0.001263215751763129 0.0 0.057301981499662306 1.028863508223363E-4 56-57 3.42954502741121E-5 0.0012689316601421478 0.0 0.06490985555213617 1.028863508223363E-4 58-59 3.42954502741121E-5 0.0012803634769001852 0.0 0.07297500227493153 1.028863508223363E-4 60-61 3.42954502741121E-5 0.0013203748355533158 0.0 0.07863946747853905 1.028863508223363E-4 62-63 3.42954502741121E-5 0.0013432384690693906 0.0 0.08414388724753405 1.028863508223363E-4 64-65 3.42954502741121E-5 0.001514715720439951 0.0 0.08969975019194021 1.028863508223363E-4 66-67 3.42954502741121E-5 0.0015375793539560258 0.0 0.09519273814417717 1.028863508223363E-4 68-69 3.42954502741121E-5 0.0015947384377462126 0.0 0.10084005562264761 1.028863508223363E-4 70-71 3.42954502741121E-5 0.0016176020712622874 0.0 0.10593292998835327 1.028863508223363E-4 72-73 3.42954502741121E-5 0.0016347497963993436 0.0 0.10969399770174756 1.028863508223363E-4 74-75 3.42954502741121E-5 0.0017033406969475676 0.0 0.11284346321858685 1.028863508223363E-4 76-77 3.42954502741121E-5 0.0017947952310118668 0.0 0.11577000830864442 1.028863508223363E-4 78-79 3.42954502741121E-5 0.0018405224980440162 0.0 0.1179363375842925 1.028863508223363E-4 80-81 3.42954502741121E-5 0.001846238406423035 0.0 0.11869083749032297 1.028863508223363E-4 82-83 3.42954502741121E-5 0.0018576702231810722 0.0 0.1192795760533619 1.1431816758037368E-4 84-85 3.42954502741121E-5 0.0018633861315600908 0.0 0.11953107602203872 1.1431816758037368E-4 86-87 3.42954502741121E-5 0.0018862497650761656 0.0 0.11963967828124006 1.1431816758037368E-4 88 3.42954502741121E-5 0.0019662724823824272 0.0 0.11964539418961909 1.1431816758037368E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11455 0.0 53.85729 1 GTATCAA 21230 0.0 37.123886 1 TCAACGC 26565 0.0 29.427458 4 ATCAACG 26905 0.0 29.039713 3 CAACGCA 27330 0.0 28.636791 5 TATCAAC 27415 0.0 28.577194 2 AACGCAG 28000 0.0 27.966803 6 ACGCAGA 32015 0.0 24.44643 7 CGCAGAG 35270 0.0 22.21453 8 GTACATG 28940 0.0 21.937351 1 TACATGG 28910 0.0 21.428465 2 GTGGTAT 5340 0.0 20.94748 1 ACATGGG 29210 0.0 20.711546 3 CTTATAC 5055 0.0 20.523756 1 GCAGAGT 37925 0.0 20.514061 9 GAGTACT 21700 0.0 19.872875 12-13 TGGTATC 5280 0.0 19.810884 2 TATATAC 10540 0.0 19.038445 3 CAGAGTA 36760 0.0 18.800247 10-11 CATGGGG 22175 0.0 18.791454 4 >>END_MODULE