##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139238_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11532441 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52109427657163 33.0 33.0 33.0 33.0 33.0 2 32.517473360583416 33.0 33.0 33.0 33.0 33.0 3 32.516947539553854 33.0 33.0 33.0 33.0 33.0 4 36.4143623193043 37.0 37.0 37.0 37.0 37.0 5 36.43795992539654 37.0 37.0 37.0 37.0 37.0 6 36.43028973657875 37.0 37.0 37.0 37.0 37.0 7 36.402923717537334 37.0 37.0 37.0 37.0 37.0 8 36.39056284788277 37.0 37.0 37.0 37.0 37.0 9 36.43409144690183 37.0 37.0 37.0 37.0 37.0 10-11 36.373431479077155 37.0 37.0 37.0 37.0 37.0 12-13 36.35159824359821 37.0 37.0 37.0 37.0 37.0 14-15 38.2602642406755 40.0 37.0 40.0 37.0 40.0 16-17 38.21383508487058 40.0 37.0 40.0 37.0 40.0 18-19 38.22410346603984 40.0 37.0 40.0 37.0 40.0 20-21 38.21824312932873 40.0 37.0 40.0 35.0 40.0 22-23 38.22434521062079 40.0 37.0 40.0 37.0 40.0 24-25 38.20200972382367 40.0 37.0 40.0 35.0 40.0 26-27 38.06809211394769 40.0 37.0 40.0 33.0 40.0 28-29 37.99871678256994 40.0 37.0 40.0 33.0 40.0 30-31 37.932740793652926 40.0 37.0 40.0 33.0 40.0 32-33 37.86271812124583 40.0 37.0 40.0 33.0 40.0 34-35 37.81069831552806 40.0 37.0 40.0 33.0 40.0 36-37 37.7464925741461 40.0 37.0 40.0 33.0 40.0 38-39 37.68710631527535 40.0 37.0 40.0 33.0 40.0 40-41 37.65362879129057 40.0 37.0 40.0 33.0 40.0 42-43 37.58338261035362 40.0 37.0 40.0 33.0 40.0 44-45 37.486220765047165 40.0 37.0 40.0 33.0 40.0 46-47 37.43394760330624 40.0 37.0 40.0 33.0 40.0 48-49 37.41576688071386 40.0 37.0 40.0 33.0 40.0 50-51 37.310657677339776 40.0 37.0 40.0 33.0 40.0 52-53 37.17435639119252 40.0 37.0 40.0 33.0 40.0 54-55 37.0325511363645 37.0 37.0 40.0 33.0 40.0 56-57 36.91362566141019 37.0 37.0 40.0 33.0 40.0 58-59 36.758736784049525 37.0 37.0 40.0 33.0 40.0 60-61 36.5919202584147 37.0 37.0 40.0 33.0 40.0 62-63 36.400702367772496 37.0 37.0 40.0 33.0 40.0 64-65 36.225574050573805 37.0 37.0 40.0 33.0 40.0 66-67 35.98921798569238 37.0 35.0 40.0 33.0 40.0 68-69 35.79448024745639 37.0 33.0 38.5 33.0 40.0 70-71 35.54536325514997 37.0 33.0 37.0 33.0 40.0 72-73 35.342904440744284 37.0 33.0 37.0 33.0 40.0 74-75 35.154638446160085 37.0 33.0 37.0 33.0 40.0 76-77 33.335431118676894 35.0 33.0 37.0 27.0 37.0 78-79 34.653660261236595 37.0 33.0 37.0 30.0 37.0 80-81 34.76799389562024 37.0 33.0 37.0 33.0 37.0 82-83 34.63446831120841 37.0 33.0 37.0 30.0 37.0 84-85 34.479062696586375 37.0 33.0 37.0 27.0 37.0 86-87 34.35396303229216 37.0 33.0 37.0 27.0 37.0 88-89 34.23775849656208 37.0 33.0 37.0 27.0 37.0 90-91 34.177388517708664 37.0 33.0 37.0 27.0 37.0 92-93 34.129867214593546 37.0 33.0 37.0 27.0 37.0 94-95 34.146245905150224 37.0 33.0 37.0 27.0 37.0 96-97 34.1190368933611 37.0 33.0 37.0 27.0 37.0 98-99 34.15110598748426 37.0 33.0 37.0 27.0 37.0 100 34.15661829841985 37.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 1.0 17 3.0 18 4.0 19 18.0 20 126.0 21 615.0 22 2256.0 23 6425.0 24 14468.0 25 28365.0 26 49374.0 27 77577.0 28 114065.0 29 158937.0 30 213908.0 31 279889.0 32 368996.0 33 485891.0 34 655746.0 35 933584.0 36 1584481.0 37 3326104.0 38 3154157.0 39 77450.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.122955582430464 19.805182614851443 14.160870192182209 23.910991610535877 2 15.052329337735177 21.047677590546527 40.913272393936374 22.986720677781918 3 18.190546129826288 26.11449735576362 30.195671497473953 25.499285016936135 4 12.66118465835434 18.040394475675647 38.228726868170796 31.06969399779922 5 13.774756333549984 37.37568230725105 35.16309251628888 13.686468842910097 6 30.36825421435063 37.39253467674363 18.55073873779194 13.6884723711138 7 26.82446445196892 32.454088853190555 22.96907011604397 17.752376578796557 8 24.960040983517715 36.14605095313299 20.68119836901832 18.212709694330975 9 26.04547886046093 16.381799819238875 20.894315788451387 36.67840553184881 10-11 24.652586573220415 26.44333863567161 28.362663982965806 20.541410808142167 12-13 25.522519721144764 24.200596897823953 28.36620422028856 21.91067916074272 14-15 22.625782578434738 25.20928481764344 26.29368590101697 25.871246702904855 16-17 22.107574623620447 28.372813700065752 26.830815783059286 22.688795893254515 18-19 22.1906576413441 27.40796159286659 28.64437372799046 21.75700703779885 20-21 23.161059652254586 26.459529648231445 28.621291562017902 21.758119137496063 22-23 22.92187858684249 26.428234878251484 28.378714022953538 22.271172511952493 24-25 22.63569213949007 26.590439118800973 28.5837170213303 22.190151720378648 26-27 22.489271801493455 26.67601675727143 28.533973044404686 22.30073839683043 28-29 22.55212672162197 26.733989735058945 28.48598414026235 22.227899403056735 30-31 22.839816120336202 26.442872160057647 28.433393985458178 22.283917734147977 32-33 22.623148451356847 26.60375546475838 28.30765517623881 22.465440907645963 34-35 22.781156172454715 26.70659356795643 28.224630384518797 22.287619875070067 36-37 22.89421179010027 26.628540757667167 28.05314145761083 22.424105994621733 38-39 22.532485978966758 26.92695567119772 28.153677861587116 22.38688048824841 40-41 22.745010986464692 26.676657443843887 28.118477822995207 22.45985374669621 42-43 22.614628516973408 26.871230996071244 27.797205192344748 22.716935294610604 44-45 22.65253672706445 26.929124647821517 27.64847517613686 22.769863448977173 46-47 22.813688642624818 26.921415149676303 27.44004214471542 22.82485406298346 48-49 22.90607735713074 27.17339914705519 27.155848598421663 22.76467489739241 50-51 22.88530124280587 27.21152792501784 27.12594824756995 22.777222584606335 52-53 23.11904922757041 27.102357883611596 26.999047811718285 22.779545077099712 54-55 23.122710842081716 26.98340193781356 26.994137643939514 22.899749576165206 56-57 23.094631794542348 27.21924862102511 26.831085438253805 22.855034146178742 58-59 22.924099905754634 27.216522264736387 27.008081573321707 22.851296256187272 60-61 23.051986743672224 27.173792611247578 26.90809708195901 22.866123563121192 62-63 23.081167603826692 27.21865617474386 26.96259774220668 22.737578479222773 64-65 23.139461345145424 27.081223134210404 26.889044458039034 22.890271062605137 66-67 23.174723523864994 27.18146303921896 26.70861340347377 22.93520003344228 68-69 23.10422071703778 27.10509358505911 26.811535425778292 22.979150272124816 70-71 23.10849494400905 26.967800649641326 26.809056992019553 23.114647414330076 72-73 23.112158954838133 27.015609375679045 26.691735007711458 23.18049666177136 74-75 22.977961858241798 27.0583597525331 26.75620254843879 23.20747584078631 76-77 23.134635587701144 27.056697372650333 26.66579056217198 23.14287647747654 78-79 22.97826743311804 27.084565071963567 26.722751153061797 23.2144163418566 80-81 23.083083948254377 27.017647758124085 26.775735650880232 23.123532642741303 82-83 23.211418719597017 26.894548977518134 26.917387341597603 22.97664496128724 84-85 23.14884472540871 26.9301744837386 26.824898732161333 23.09608205869135 86-87 23.031967316447634 27.035398591195086 26.824640534400046 23.107993557957233 88-89 23.200466847041035 26.824133362203373 26.740788776979745 23.234611013775847 90-91 23.16966432452712 26.862311977171505 26.784266349353413 23.183757348947964 92-93 23.21070586571908 26.853644292020718 26.91545192498709 23.020197917273112 94-95 22.977729407547407 26.992996856501687 26.922651491016886 23.106622244934016 96-97 23.036736736568823 27.029548677857747 26.98790157424316 22.94581301133027 98-99 24.269890446322396 28.967047904228505 27.098892494678584 19.664169154770512 100 23.061157734346747 30.04518116964765 20.979796822512192 25.91386427349341 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2968.0 1 2587.5 2 3352.5 3 4788.0 4 6461.0 5 10504.0 6 14083.0 7 16844.5 8 19031.5 9 19138.0 10 17507.0 11 15805.0 12 16951.0 13 22025.0 14 34086.0 15 51089.0 16 65224.0 17 73554.5 18 75507.0 19 71173.0 20 63216.5 21 54991.0 22 49731.0 23 50383.5 24 56881.0 25 69424.5 26 86323.0 27 103798.0 28 123178.5 29 145903.0 30 167212.5 31 187553.0 32 209605.5 33 230634.0 34 252289.5 35 272878.0 36 295766.5 37 318171.5 38 333954.0 39 349862.0 40 366870.5 41 380497.5 42 389820.0 43 399241.5 44 410268.5 45 428450.5 46 446386.5 47 464562.0 48 477140.5 49 476265.5 50 475574.5 51 475865.0 52 458131.5 53 429044.5 54 409847.5 55 392762.0 56 372817.0 57 343778.0 58 310783.0 59 275413.5 60 234856.5 61 201207.5 62 166427.0 63 134702.0 64 112010.0 65 88730.5 66 70644.0 67 52584.0 68 34637.5 69 25313.5 70 18537.5 71 11845.5 72 8048.5 73 5846.5 74 4357.0 75 3116.5 76 2050.5 77 1203.5 78 881.5 79 702.5 80 489.5 81 327.5 82 255.5 83 176.0 84 106.5 85 76.0 86 61.5 87 53.5 88 43.5 89 33.5 90 22.0 91 13.5 92 11.5 93 6.5 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.001482773681651612 5 0.006902268132132651 6 0.0 7 1.7342382241539325E-5 8 0.0 9 8.150919653523482E-4 10-11 9.321530454827386E-4 12-13 0.0012920074769946796 14-15 0.001131590441260441 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 244.0 20-21 935.0 22-23 1882.0 24-25 4142.0 26-27 5491.0 28-29 8963.0 30-31 19862.0 32-33 24939.0 34-35 35669.0 36-37 49223.0 38-39 58772.0 40-41 63229.0 42-43 79445.0 44-45 95272.0 46-47 92194.0 48-49 82117.0 50-51 72403.0 52-53 69941.0 54-55 75407.0 56-57 80563.0 58-59 81387.0 60-61 80411.0 62-63 78702.0 64-65 85986.0 66-67 91002.0 68-69 93547.0 70-71 92256.0 72-73 88778.0 74-75 92954.0 76-77 90115.0 78-79 96929.0 80-81 100040.0 82-83 98842.0 84-85 101601.0 86-87 108381.0 88-89 117103.0 90-91 124231.0 92-93 130847.0 94-95 152760.0 96-97 403967.0 98-99 717112.0 100-101 7584797.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.50432840434388 #Duplication Level Percentage of deduplicated Percentage of total 1 88.8029447876061 73.26627320029472 2 7.539024835255198 12.440043617127989 3 1.9520126514772105 4.831484785407296 4 0.7443933814516569 2.456627040212301 5 0.3423695109368674 1.4123483282984957 6 0.188277356747726 0.9320218123329718 7 0.11497792777007544 0.6640323698395264 8 0.07297383198166207 0.48165255989907685 9 0.05186359933165031 0.38510742883408083 >10 0.18243765114594032 2.4781396204012016 >50 0.00670812458232487 0.36978702343393727 >100 0.001973627721316689 0.25261557798741574 >500 2.1357064117403944E-5 0.011717634040771245 >1k 2.135692820670545E-5 0.018149001890282422 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7342382241539325E-5 0.0 0.0 0.0 3 0.0 1.7342382241539325E-5 0.0 8.671191120769662E-6 0.0 4 0.0 4.335595560384831E-5 0.0 1.7342382241539325E-5 8.671191120769662E-6 5 0.0 7.804072008692695E-5 0.0 1.7342382241539325E-5 1.7342382241539325E-5 6 0.0 7.804072008692695E-5 0.0 2.6013573362308986E-5 1.7342382241539325E-5 7 0.0 8.671191120769662E-5 0.0 2.6013573362308986E-5 2.6013573362308986E-5 8 0.0 8.671191120769662E-5 0.0 2.6013573362308986E-5 2.6013573362308986E-5 9 0.0 1.9943739577770223E-4 0.0 4.335595560384831E-5 3.468476448307865E-5 10-11 0.0 2.0810858689847189E-4 0.0 6.503393340577246E-5 3.468476448307865E-5 12-13 8.671191120769662E-6 2.0810858689847189E-4 0.0 7.804072008692695E-5 4.335595560384831E-5 14-15 8.671191120769662E-6 3.33840858149632E-4 0.0 7.804072008692695E-5 5.202714672461797E-5 16-17 1.7342382241539325E-5 3.381764537100168E-4 0.0 7.804072008692695E-5 5.202714672461797E-5 18-19 2.6013573362308986E-5 3.59854431511941E-4 0.0 7.804072008692695E-5 5.6362742285002805E-5 20-21 2.6013573362308986E-5 4.075459826761741E-4 0.0 7.804072008692695E-5 6.069833784538763E-5 22-23 2.6013573362308986E-5 4.5090193828002244E-4 0.0 8.671191120769662E-5 6.503393340577247E-5 24-25 6.93695289661573E-5 5.029290850046404E-4 0.0 1.3873905793231457E-4 7.370512452654213E-5 26-27 9.538310232846628E-5 5.289426583669494E-4 0.0 2.688069247438595E-4 8.237631564731178E-5 28-29 9.971869788885112E-5 5.419494450481039E-4 0.0 7.543936275069606E-4 8.671191120769662E-5 30-31 1.1272548457000561E-4 6.329969518161854E-4 0.0 0.0019380112154920195 8.671191120769662E-5 32-33 1.2139667569077526E-4 6.546749296181095E-4 0.0 0.004188185311331747 9.104750676808145E-5 34-35 1.2139667569077526E-4 7.847427964296544E-4 0.0 0.007101705527910353 1.0405429344923594E-4 36-37 1.2139667569077526E-4 9.278174499223538E-4 0.0 0.011654080866314425 1.0405429344923594E-4 38-39 1.2139667569077526E-4 9.798445966469717E-4 0.0 0.019822342902079446 1.2573227125116008E-4 40-41 1.2139667569077526E-4 0.0010492141256131292 0.0 0.027435648706115208 1.387390579323146E-4 42-43 1.2139667569077526E-4 0.001083898890096208 0.0 0.03321499758810819 1.387390579323146E-4 44-45 1.2139667569077526E-4 0.0011836175879850587 0.0 0.03974440450204775 1.387390579323146E-4 46-47 1.2139667569077526E-4 0.0012573227125116009 0.0 0.04599199770456228 1.387390579323146E-4 48-49 1.2139667569077526E-4 0.0012616583080719858 0.0 0.05182337373327989 1.4741024905308425E-4 50-51 1.2139667569077526E-4 0.0014177397482458397 0.0 0.05657518646746166 1.560814401738539E-4 52-53 1.2139667569077526E-4 0.0014307465349269943 0.0 0.06066798867646494 1.7342382241539324E-4 54-55 1.2139667569077526E-4 0.0014524245127289183 0.0 0.06475211969434745 1.9076620465693255E-4 56-57 1.2139667569077526E-4 0.0014827736816516123 0.0 0.06876254558770342 2.0810858689847189E-4 58-59 1.2139667569077526E-4 0.0015087872550139212 0.0 0.07309380555252787 2.2545096914001122E-4 60-61 1.3006786681154492E-4 0.0015304652328158453 0.0 0.0774033875395504 2.3845775582116572E-4 62-63 1.3006786681154492E-4 0.0015694855928593088 0.0 0.0817433186954956 2.4279335138155053E-4 64-65 1.3006786681154492E-4 0.0018036077531200898 0.0 0.08605723627807851 2.4279335138155053E-4 66-67 1.3006786681154492E-4 0.0018036077531200898 0.0 0.09030611992725565 2.4712894694193534E-4 68-69 1.3006786681154492E-4 0.0018643060909654774 0.0 0.09487583764790125 2.55800138062705E-4 70-71 1.3006786681154492E-4 0.0019119976421297104 0.0 0.09915507046600108 2.688069247438595E-4 72-73 1.3006786681154492E-4 0.0019380112154920195 0.0 0.10252816381198049 2.861493069853988E-4 74-75 1.3006786681154492E-4 0.0019900383622166373 0.0 0.10542867724187793 2.861493069853988E-4 76-77 1.3006786681154492E-4 0.0020724146778639493 0.0 0.1086413535521231 2.904849025457837E-4 78-79 1.3006786681154492E-4 0.0020984282512262584 0.0 0.11044496130524319 2.948204981061685E-4 80-81 1.3006786681154492E-4 0.0021201062290281823 0.0 0.11109096504374052 3.1216288034770787E-4 82-83 1.3006786681154492E-4 0.0021417842068301067 0.0 0.11182368069344556 3.251696670288623E-4 84-85 1.3006786681154492E-4 0.0021721333757528 0.0 0.11210115880931018 3.33840858149632E-4 86-87 1.3006786681154492E-4 0.0022111537357962638 0.0 0.11217919952939712 3.4251204927040167E-4 88 1.3006786681154492E-4 0.002332550411487039 0.0 0.11218787072051789 3.468476448307865E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16185 0.0 54.77203 1 GTATCAA 30140 0.0 37.972427 1 TCAACGC 37610 0.0 29.9967 4 ATCAACG 38100 0.0 29.610916 3 TATCAAC 38815 0.0 29.220299 2 CAACGCA 38640 0.0 29.219318 5 AACGCAG 39395 0.0 28.657719 6 ACGCAGA 44840 0.0 25.17842 7 CGCAGAG 49015 0.0 23.051485 8 GTACATG 39130 0.0 22.380602 1 GTGGTAT 7335 0.0 22.064428 1 TGGTATC 6940 0.0 21.959393 2 TACATGG 39115 0.0 21.818481 2 GCAGAGT 52730 0.0 21.3463 9 ACATGGG 39275 0.0 21.161215 3 GAGTACT 30970 0.0 20.43825 12-13 CAGAGTA 51625 0.0 19.316874 10-11 AGAGTAC 48275 0.0 19.127834 10-11 CATGGGG 30475 0.0 19.05924 4 GTACTTT 34815 0.0 18.070137 14-15 >>END_MODULE