##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139237_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10683457 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53347189023179 33.0 33.0 33.0 33.0 33.0 2 32.54418902046407 33.0 33.0 33.0 33.0 33.0 3 32.53641054576248 33.0 33.0 33.0 33.0 33.0 4 36.44644369327269 37.0 37.0 37.0 37.0 37.0 5 36.48379864307967 37.0 37.0 37.0 37.0 37.0 6 36.48553019869879 37.0 37.0 37.0 37.0 37.0 7 36.465956103909065 37.0 37.0 37.0 37.0 37.0 8 36.46037981900428 37.0 37.0 37.0 37.0 37.0 9 36.48324067761961 37.0 37.0 37.0 37.0 37.0 10-11 36.4332326137504 37.0 37.0 37.0 37.0 37.0 12-13 36.41386636366862 37.0 37.0 37.0 37.0 37.0 14-15 38.35794027158063 40.0 37.0 40.0 37.0 40.0 16-17 38.32805209961532 40.0 37.0 40.0 37.0 40.0 18-19 38.36150531611631 40.0 37.0 40.0 37.0 40.0 20-21 38.35933221383823 40.0 37.0 40.0 37.0 40.0 22-23 38.35901987227296 40.0 37.0 40.0 37.0 40.0 24-25 38.33153943882305 40.0 37.0 40.0 37.0 40.0 26-27 38.20931414213169 40.0 37.0 40.0 37.0 40.0 28-29 38.153057675481094 40.0 37.0 40.0 35.0 40.0 30-31 38.07301962627818 40.0 37.0 40.0 33.0 40.0 32-33 37.99356630644152 40.0 37.0 40.0 33.0 40.0 34-35 37.970412927598105 40.0 37.0 40.0 33.0 40.0 36-37 37.90915839423866 40.0 37.0 40.0 33.0 40.0 38-39 37.857698562987466 40.0 37.0 40.0 33.0 40.0 40-41 37.82235832381481 40.0 37.0 40.0 33.0 40.0 42-43 37.76283808192234 40.0 37.0 40.0 33.0 40.0 44-45 37.686468487894984 40.0 37.0 40.0 33.0 40.0 46-47 37.637712725564676 40.0 37.0 40.0 33.0 40.0 48-49 37.610219460643535 40.0 37.0 40.0 33.0 40.0 50-51 37.53114332181924 40.0 37.0 40.0 33.0 40.0 52-53 37.4215754313595 40.0 37.0 40.0 33.0 40.0 54-55 37.23983747126715 40.0 37.0 40.0 33.0 40.0 56-57 37.125151330051736 37.0 37.0 40.0 33.0 40.0 58-59 36.99404384067742 37.0 37.0 40.0 33.0 40.0 60-61 36.85888617914053 37.0 37.0 40.0 33.0 40.0 62-63 36.69832459036243 37.0 37.0 40.0 33.0 40.0 64-65 36.502656872338605 37.0 37.0 40.0 33.0 40.0 66-67 36.29005502709984 37.0 37.0 40.0 33.0 40.0 68-69 36.07621837732361 37.0 37.0 40.0 33.0 40.0 70-71 35.819734150060135 37.0 35.0 37.0 33.0 40.0 72-73 35.63118211871775 37.0 33.0 37.0 33.0 40.0 74-75 35.44373207803258 37.0 33.0 37.0 33.0 40.0 76-77 33.607144510664384 35.0 33.0 37.0 27.0 37.0 78-79 34.92794500230917 37.0 33.0 37.0 33.0 37.0 80-81 34.99664397252777 37.0 33.0 37.0 33.0 37.0 82-83 34.86434701437953 37.0 33.0 37.0 33.0 37.0 84-85 34.719883741339046 37.0 33.0 37.0 33.0 37.0 86-87 34.62364147247462 37.0 33.0 37.0 33.0 37.0 88-89 34.50891272214001 37.0 33.0 37.0 33.0 37.0 90-91 34.4517555155975 37.0 33.0 37.0 33.0 37.0 92-93 34.38483257244464 37.0 33.0 37.0 33.0 37.0 94-95 34.403453620238935 37.0 33.0 37.0 33.0 37.0 96-97 34.39307651848376 37.0 33.0 37.0 33.0 37.0 98-99 34.39079469627664 37.0 33.0 37.0 33.0 37.0 100 34.37294391680492 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 2.0 16 1.0 17 2.0 18 2.0 19 25.0 20 103.0 21 479.0 22 1736.0 23 4908.0 24 11682.0 25 22512.0 26 39850.0 27 63753.0 28 92466.0 29 130584.0 30 176865.0 31 232784.0 32 307496.0 33 407273.0 34 553535.0 35 794124.0 36 1368000.0 37 3058198.0 38 3332542.0 39 84535.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.00846224213754 20.058301353204307 14.201320789703184 23.73191561495497 2 14.789884959521999 21.277410486137587 41.364092166047 22.568612388293417 3 18.007635543438795 26.44310732003695 30.52822695874566 25.0210301777786 4 12.392560408838856 18.34508700424746 38.90797522008355 30.354377366830132 5 13.443831898232942 37.59562096800689 35.51770742372998 13.442839710030189 6 29.624454084707217 38.00507402395147 18.876505438232687 13.493966453108616 7 26.20070450978555 32.76472213067362 23.39638751763591 17.638185841904917 8 24.514592982402604 36.43422723562233 21.096832233236864 17.954347548738202 9 25.703505897014423 16.638574948165186 21.272646110711168 36.385273044109226 10-11 24.15979782503531 26.766096378703256 28.80073563440464 20.273370161856793 12-13 25.15841907458465 24.518279509201683 28.780806465026775 21.54249495118689 14-15 22.271878624814946 25.611210726569233 26.723352625742 25.393558022873826 16-17 21.72161595258913 28.71600924681964 27.255175922924575 22.30719887766666 18-19 21.731771841268234 27.749795782395154 29.14816337071418 21.37026900562243 20-21 22.646107334142307 26.822265435868708 29.151360750134568 21.380266479854413 22-23 22.369771511394003 26.824589024056028 28.919703324528058 21.88593614002191 24-25 22.134920461398377 27.009528264772825 29.043311541471727 21.81223973235707 26-27 22.032353421361712 27.09265347493033 28.995449337098904 21.879543766609057 28-29 22.045308908293404 27.104474870310508 29.019968936844894 21.8302472845512 30-31 22.33806765274736 26.872853571661448 28.886777415058784 21.902301360532412 32-33 22.177625144761905 27.017040181877494 28.82212439910385 21.983210274256752 34-35 22.304948279017207 27.151833928972252 28.739516481793387 21.803701310217154 36-37 22.371663199206676 27.047724609112265 28.59838160613541 21.982230585545643 38-39 22.081095744114805 27.324859948768232 28.69093429563922 21.90311001147774 40-41 22.312253128672708 27.095714214887924 28.60653401994238 21.985498636496985 42-43 22.20564030157301 27.246489185282247 28.334311125791743 22.213559387352998 44-45 22.219386426023295 27.34378797941338 28.141289082904482 22.29553651165885 46-47 22.391716353621227 27.320199523147863 27.87179395626819 22.416290166962725 48-49 22.466562269649085 27.550489177551864 27.64725195389785 22.3356965989012 50-51 22.44022924469565 27.59899901934302 27.60106314252036 22.35970859344097 52-53 22.624182367661664 27.520421391266876 27.522124609870534 22.333271631200926 54-55 22.651624428467443 27.412336931720322 27.492452690241613 22.44358594957062 56-57 22.675688440106843 27.656311019069012 27.24439613028067 22.423604410543476 58-59 22.476696087309264 27.666062918917962 27.484713981969854 22.37252701180292 60-61 22.60767756279593 27.669754700380413 27.353335975128918 22.369231761694746 62-63 22.588002827664898 27.660978177765195 27.42561763416181 22.325401360408097 64-65 22.642653566078565 27.556058552635943 27.35947553898621 22.44181234229928 66-67 22.73212410309498 27.598989543532703 27.167889067560296 22.500997285812023 68-69 22.67983343572011 27.49714536596323 27.2980123068336 22.525008891483065 70-71 22.662113905193177 27.38893587295604 27.29105468562578 22.657895536225002 72-73 22.689616101001224 27.420441891177965 27.186555119862703 22.703386887958104 74-75 22.575980592885767 27.459857028678456 27.22278620393347 22.74137617450231 76-77 22.664062450029544 27.462648841655877 27.152156551194338 22.721132157120238 78-79 22.532562576244626 27.475713026366172 27.230138553734097 22.761585843655112 80-81 22.61353050542682 27.414703886856906 27.253831093629742 22.71793451408653 82-83 22.760560820385827 27.283145001661328 27.379746511911897 22.576547666040945 84-85 22.760533215080315 27.301132452850997 27.297729694642904 22.640604637425785 86-87 22.60125206355024 27.419994565827288 27.300732743384387 22.67802062723808 88-89 22.758004336378907 27.23929100040623 27.217688896377723 22.785015766837144 90-91 22.755684510661027 27.267242785418393 27.251775699324128 22.725297004596452 92-93 22.81784223454073 27.221712531043686 27.379245045988437 22.581200188427147 94-95 22.585794294101362 27.360593723454063 27.38720877793336 22.666403204511216 96-97 22.645662346162172 27.4380676526926 27.433226291693185 22.483043709452044 98-99 23.85697353455277 29.340445152507854 27.595396920870535 19.207184392068843 100 22.72295432412431 30.388423263483144 21.468535818394333 25.420086593998214 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3382.0 1 2808.5 2 3461.5 3 4943.0 4 6678.0 5 10864.0 6 14505.0 7 17505.5 8 19889.5 9 19833.0 10 17540.0 11 15209.5 12 16267.5 13 21425.0 14 33463.0 15 50098.5 16 63916.0 17 71720.5 18 72793.0 19 68072.5 20 60639.0 21 53615.5 22 49435.5 23 50562.5 24 57705.0 25 71158.0 26 89027.0 27 107847.0 28 128343.0 29 150674.5 30 172229.0 31 192432.5 32 212566.0 33 232889.0 34 254202.5 35 274592.0 36 295418.5 37 314631.5 38 330896.0 39 346586.5 40 361270.0 41 373848.0 42 381158.0 43 387866.0 44 395696.0 45 408544.0 46 421598.0 47 435794.0 48 447876.0 49 445306.5 50 438223.5 51 431205.0 52 409475.0 53 380391.0 54 357154.0 55 335329.5 56 312399.0 57 284167.0 58 254200.0 59 220877.5 60 185248.0 61 156694.5 62 128605.5 63 103392.0 64 84633.5 65 66085.0 66 52476.0 67 39186.5 68 25696.0 69 18498.5 70 13357.0 71 8626.5 72 5926.5 73 4283.5 74 3275.5 75 2403.0 76 1602.5 77 947.0 78 672.5 79 525.0 80 348.5 81 219.5 82 176.5 83 122.0 84 74.0 85 44.0 86 31.0 87 26.0 88 22.0 89 16.5 90 10.5 91 7.0 92 4.5 93 2.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0011981140561524233 5 0.0 6 2.1528611946488856E-4 7 0.0 8 0.0 9 0.0 10-11 0.004052995205578119 12-13 5.148146335029944E-5 14-15 0.0014321207077446934 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 220.0 20-21 829.0 22-23 1760.0 24-25 3541.0 26-27 5006.0 28-29 9035.0 30-31 18859.0 32-33 24398.0 34-35 34126.0 36-37 47194.0 38-39 55765.0 40-41 60279.0 42-43 74262.0 44-45 89517.0 46-47 87278.0 48-49 77248.0 50-51 67320.0 52-53 66209.0 54-55 71445.0 56-57 75853.0 58-59 75226.0 60-61 74577.0 62-63 74357.0 64-65 80496.0 66-67 85049.0 68-69 85872.0 70-71 84415.0 72-73 81001.0 74-75 84348.0 76-77 82008.0 78-79 88711.0 80-81 91527.0 82-83 89912.0 84-85 90778.0 86-87 97010.0 88-89 105244.0 90-91 112077.0 92-93 116223.0 94-95 134475.0 96-97 362302.0 98-99 660172.0 100-101 7057533.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.40824502048297 #Duplication Level Percentage of deduplicated Percentage of total 1 88.75525427397278 73.14164741064816 2 7.553912768688302 12.450093886108407 3 1.9424447328817123 4.802203844581882 4 0.7373794656159812 2.430645907022183 5 0.35997756028087013 1.483255949475081 6 0.19506874536257018 0.9645163778206128 7 0.11183436522579357 0.6451251639866163 8 0.07282754626955378 0.4801272221777558 9 0.05398746610112262 0.40041111010466984 >10 0.21120400691926078 2.7810749099385657 >50 0.005112984755867195 0.2791112606032631 >100 9.737354298716281E-4 0.12570891333602008 >500 2.2348496388061945E-5 0.01607804419681065 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 9.360266063690807E-6 0.0 4 0.0 1.216834588279805E-4 0.0 9.360266063690807E-6 0.0 5 0.0 1.310437248916713E-4 0.0 9.360266063690807E-6 0.0 6 1.0296292670059887E-4 1.404039909553621E-4 0.0 9.360266063690807E-6 0.0 7 1.0296292670059887E-4 1.5912452308274372E-4 0.0 9.360266063690807E-6 0.0 8 1.0296292670059887E-4 1.5912452308274372E-4 0.0 9.360266063690807E-6 0.0 9 1.0296292670059887E-4 2.9952851403810583E-4 0.0 2.808079819107242E-5 0.0 10-11 1.0296292670059887E-4 2.9952851403810583E-4 0.0 5.148146335029944E-5 0.0 12-13 1.0296292670059887E-4 2.9952851403810583E-4 0.0 6.552186244583565E-5 0.0 14-15 1.0296292670059887E-4 4.118517068023955E-4 0.0 7.020199547768106E-5 1.8720532127381615E-5 16-17 1.310437248916713E-4 4.305722389297771E-4 0.0 7.488212850952646E-5 1.8720532127381615E-5 18-19 1.357238579235167E-4 4.6333317015269496E-4 0.0 7.956226154137186E-5 3.2760931222917826E-5 20-21 1.404039909553621E-4 5.10134500471149E-4 0.0 9.828279366875347E-5 3.744106425476323E-5 22-23 1.404039909553621E-4 5.569358307896031E-4 0.0 1.1232319276428968E-4 4.212119728660863E-5 24-25 1.450841239872075E-4 5.850166289806754E-4 0.0 1.310437248916713E-4 4.6801330318454035E-5 26-27 1.4976425701905292E-4 5.990570280762117E-4 0.0 1.8720532127381614E-4 4.6801330318454035E-5 28-29 1.4976425701905292E-4 6.03737161108057E-4 0.0 5.10134500471149E-4 4.6801330318454035E-5 30-31 1.4976425701905292E-4 7.535014181271099E-4 0.0 0.0014227604416810027 4.6801330318454035E-5 32-33 1.4976425701905292E-4 7.581815511589554E-4 0.0 0.003673904429998642 5.148146335029944E-5 34-35 1.5444439005089832E-4 8.985855421143176E-4 0.0 0.006734711432825535 5.616159638214484E-5 36-37 1.5912452308274372E-4 0.001020269000942298 0.0 0.010375854931601258 5.616159638214484E-5 38-39 1.5912452308274372E-4 0.0010296292670059887 0.0 0.01467221705483534 5.616159638214484E-5 40-41 1.7784505521012533E-4 0.0011045113955155152 0.0 0.01905282157264264 6.552186244583565E-5 42-43 1.7784505521012533E-4 0.0011466325928021239 0.0 0.02365339234294667 7.488212850952646E-5 44-45 1.7784505521012533E-4 0.0012823564507256405 0.0 0.02874537708159447 8.424239457321726E-5 46-47 1.8720532127381614E-4 0.0013759591113625487 0.0 0.03330850678764374 8.424239457321726E-5 48-49 1.8720532127381614E-4 0.0013759591113625487 0.0 0.03863449817788381 8.424239457321726E-5 50-51 2.0124572036935235E-4 0.001553804166572674 0.0 0.043169547085742 9.360266063690807E-5 52-53 2.1528611946488856E-4 0.0015818849647637465 0.0 0.04763907413115436 9.828279366875347E-5 54-55 2.1996625249673396E-4 0.0015865650977955918 0.0 0.05201031838289797 1.0296292670059887E-4 56-57 2.2464638552857936E-4 0.0015912452308274373 0.0 0.056653010350488614 1.0296292670059887E-4 58-59 2.2932651856042476E-4 0.0015959253638592828 0.0 0.06171223415791349 1.0296292670059887E-4 60-61 2.527271837196518E-4 0.0016380465611458912 0.0 0.06668253543773331 1.0296292670059887E-4 62-63 2.6676758281518804E-4 0.0016848478914643452 0.0 0.07153115325872515 1.0296292670059887E-4 64-65 2.714477158470334E-4 0.0020077770706616784 0.0 0.07628148828604824 1.0296292670059887E-4 66-67 2.808079819107242E-4 0.002017137336725369 0.0 0.08121902863464514 1.0296292670059887E-4 68-69 2.90168247974415E-4 0.0020732989331075135 0.0 0.08642333656605722 1.0296292670059887E-4 70-71 2.9952851403810583E-4 0.002120100263425968 0.0 0.09136087691465412 1.1232319276428968E-4 72-73 3.3696957829286905E-4 0.0021294605294896584 0.0 0.09508158267497122 1.310437248916713E-4 74-75 3.4632984435655986E-4 0.0021481810616170403 0.0 0.0979458240904606 1.310437248916713E-4 76-77 3.6505037648394147E-4 0.002237103589222103 0.0 0.10083346617110922 1.357238579235167E-4 78-79 3.744106425476323E-4 0.0022651843874131753 0.0 0.10249491339741434 1.404039909553621E-4 80-81 3.837709086113231E-4 0.0022698645204450208 0.0 0.1030892902924587 1.404039909553621E-4 82-83 3.837709086113231E-4 0.002283904919540557 0.0 0.10359474465989801 1.404039909553621E-4 84-85 3.837709086113231E-4 0.0023166658507634747 0.0 0.1038615122427132 1.404039909553621E-4 86-87 3.837709086113231E-4 0.0023494267819863927 0.0 0.10393639437122273 1.404039909553621E-4 88 3.837709086113231E-4 0.0024991910390054456 0.0 0.10394575463728642 1.404039909553621E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15580 0.0 53.171402 1 GTATCAA 28685 0.0 37.69434 1 TCAACGC 34955 0.0 30.406204 4 ATCAACG 35380 0.0 30.052643 3 TATCAAC 36120 0.0 29.662378 2 CAACGCA 35895 0.0 29.61174 5 AACGCAG 36360 0.0 29.315557 6 ACGCAGA 41240 0.0 25.753063 7 CGCAGAG 43915 0.0 24.184477 8 GCAGAGT 48150 0.0 21.826015 9 GTACATG 34130 0.0 21.647846 1 GTGGTAT 7245 0.0 21.058397 1 TACATGG 34435 0.0 21.008066 2 TGGTATC 6825 0.0 20.596094 2 ACATGGG 34530 0.0 20.428993 3 GAGTACT 29715 0.0 20.328297 12-13 CAGAGTA 47280 0.0 19.671139 10-11 AGAGTAC 44165 0.0 18.986671 10-11 CATGGGG 25340 0.0 18.77311 4 GTACTTT 33265 0.0 18.159695 14-15 >>END_MODULE