##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139236_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10985555 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54094262875203 33.0 33.0 33.0 33.0 33.0 2 32.55508101320325 33.0 33.0 33.0 33.0 33.0 3 32.544732969795334 33.0 33.0 33.0 33.0 33.0 4 36.45976065842827 37.0 37.0 37.0 37.0 37.0 5 36.50140561856001 37.0 37.0 37.0 37.0 37.0 6 36.502866263925675 37.0 37.0 37.0 37.0 37.0 7 36.4832027148378 37.0 37.0 37.0 37.0 37.0 8 36.47837437434886 37.0 37.0 37.0 37.0 37.0 9 36.493022246031266 37.0 37.0 37.0 37.0 37.0 10-11 36.44780746170767 37.0 37.0 37.0 37.0 37.0 12-13 36.42627910014561 37.0 37.0 37.0 37.0 37.0 14-15 38.35448723346249 40.0 37.0 40.0 37.0 40.0 16-17 38.33026688228314 40.0 37.0 40.0 37.0 40.0 18-19 38.38828188471133 40.0 37.0 40.0 37.0 40.0 20-21 38.39302741971332 40.0 37.0 40.0 37.0 40.0 22-23 38.39364696268494 40.0 37.0 40.0 37.0 40.0 24-25 38.36233582582438 40.0 37.0 40.0 37.0 40.0 26-27 38.235793195520756 40.0 37.0 40.0 37.0 40.0 28-29 38.17709805704246 40.0 37.0 40.0 37.0 40.0 30-31 38.07821543094083 40.0 37.0 40.0 33.0 40.0 32-33 37.989180951220035 40.0 37.0 40.0 33.0 40.0 34-35 37.963824172578406 40.0 37.0 40.0 33.0 40.0 36-37 37.89872384112473 40.0 37.0 40.0 33.0 40.0 38-39 37.84049853092147 40.0 37.0 40.0 33.0 40.0 40-41 37.807546820051456 40.0 37.0 40.0 33.0 40.0 42-43 37.74474898459229 40.0 37.0 40.0 33.0 40.0 44-45 37.66956966727929 40.0 37.0 40.0 33.0 40.0 46-47 37.61703430354663 40.0 37.0 40.0 33.0 40.0 48-49 37.588505572703724 40.0 37.0 40.0 33.0 40.0 50-51 37.50719747234269 40.0 37.0 40.0 33.0 40.0 52-53 37.406889727825586 40.0 37.0 40.0 33.0 40.0 54-55 37.23618240220411 40.0 37.0 40.0 33.0 40.0 56-57 37.12964458757771 37.0 37.0 40.0 33.0 40.0 58-59 37.00949613127884 37.0 37.0 40.0 33.0 40.0 60-61 36.88151645490326 37.0 37.0 40.0 33.0 40.0 62-63 36.73328735053232 37.0 37.0 40.0 33.0 40.0 64-65 36.549754683319485 37.0 37.0 40.0 33.0 40.0 66-67 36.34519698943315 37.0 37.0 40.0 33.0 40.0 68-69 36.141843007757984 37.0 37.0 40.0 33.0 40.0 70-71 35.89619528179952 37.0 35.0 37.0 33.0 40.0 72-73 35.71822875498363 37.0 33.0 37.0 33.0 40.0 74-75 35.538280038106834 37.0 33.0 37.0 33.0 40.0 76-77 33.6987578444454 35.0 33.0 37.0 27.0 37.0 78-79 35.011289309637846 37.0 33.0 37.0 33.0 37.0 80-81 35.072155343445814 37.0 33.0 37.0 33.0 37.0 82-83 34.937369860535625 37.0 33.0 37.0 33.0 37.0 84-85 34.79096041657432 37.0 33.0 37.0 33.0 37.0 86-87 34.698408098050905 37.0 33.0 37.0 33.0 37.0 88-89 34.58306237985754 37.0 33.0 37.0 33.0 37.0 90-91 34.5261912122252 37.0 33.0 37.0 33.0 37.0 92-93 34.457333666636664 37.0 33.0 37.0 33.0 37.0 94-95 34.47815264195483 37.0 33.0 37.0 33.0 37.0 96-97 34.468943787807895 37.0 33.0 37.0 33.0 37.0 98-99 34.46843589086468 37.0 33.0 37.0 33.0 37.0 100 34.44402867117293 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 1.0 13 0.0 14 0.0 15 0.0 16 3.0 17 2.0 18 5.0 19 24.0 20 122.0 21 470.0 22 1754.0 23 4802.0 24 11337.0 25 22192.0 26 38679.0 27 62564.0 28 92704.0 29 130052.0 30 176959.0 31 236378.0 32 311797.0 33 415914.0 34 564201.0 35 804076.0 36 1385929.0 37 3107232.0 38 3515152.0 39 103205.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.39155873326382 20.280459203017053 14.319631552525111 23.008350511194017 2 14.721604871123944 21.617041651514192 41.6518601017427 22.009493375619165 3 17.808331031067613 27.26839017236726 30.808129402656487 24.115149393908638 4 12.044411200402132 18.573461004292323 39.28321584586561 30.098911949439927 5 12.937179778354393 38.06407596156953 35.56129845055621 13.437445809519865 6 28.7019091731577 38.662938857540105 19.03248096748262 13.602671001819575 7 25.567046908417463 33.42440140712053 23.585626761688417 17.42292492277359 8 24.432265825440773 36.36419825853132 21.313315531167977 17.890220384859937 9 25.7703320405751 16.501642384021565 21.607784040041672 36.120241535361664 10-11 23.943560810125604 27.11151744068445 28.727279827824365 20.21764192136558 12-13 25.138485296938867 25.003608148065382 28.893671938666714 20.96423461632904 14-15 22.224471668919275 25.911372963294294 27.286928330215943 24.577227037570488 16-17 21.17507945661371 29.108975377211255 27.69749002212451 22.018455144050527 18-19 21.147966579749497 27.751001201122747 30.19591181328572 20.905120405842034 20-21 22.254052113347385 26.713247505810582 30.25817077118418 20.774529609657854 22-23 21.945199682739222 26.827153691579696 30.005688261424048 21.221958364257034 24-25 21.606760972690754 27.086914985656847 30.24540016693344 21.060923874718966 26-27 21.51058950931144 27.136885441224656 30.151184862772716 21.20134018669118 28-29 21.444092705250032 27.16011901147611 30.14662911135071 21.24915917192315 30-31 21.935717715204696 26.889897812792363 30.004152229677043 21.170232242325895 32-33 21.56412063874805 27.160605807368466 29.862875085266534 21.412398468616953 34-35 21.760952926909972 27.27695211193132 29.864949670664775 21.09714529049393 36-37 21.84495780353097 27.213077870874393 29.609831970222427 21.33213235537221 38-39 21.521204899888197 27.414241126233012 29.700490288735875 21.364063685142916 40-41 21.73952618098582 27.170020763173742 29.643932707874303 21.446520347966135 42-43 21.71051354747154 27.379797710268278 29.219337787511495 21.69035095474869 44-45 21.65566638921202 27.553237852230474 29.01096262762512 21.78013313093239 46-47 21.95072052575477 27.468134933976003 28.596995652879322 21.98414888738991 48-49 22.056076453167282 27.82128761359701 28.263702582091565 21.858933351144145 50-51 22.05609764644728 27.83225023313586 28.169377337442498 21.942274782974366 52-53 22.230790825051518 27.81000878953298 28.037673630052602 21.9215267553629 54-55 22.234776109958222 27.751656503105682 27.987861918629562 22.02570546830653 56-57 22.339079466567327 28.010559285542463 27.64782725841563 22.002533989474582 58-59 22.059151962313457 28.00535681006582 27.978000107497873 21.95749112012285 60-61 22.26362069871572 28.084689178061666 27.75967259555711 21.892017527665505 62-63 22.219860254322594 28.043425035458913 27.87635926267951 21.860355447538982 64-65 22.284828930516802 27.887130889402023 27.789400185412884 22.038639994668298 66-67 22.40693359927938 27.923225268791413 27.55722129512328 22.11261983680593 68-69 22.344495570780552 27.834135554853116 27.701566543376554 22.11980233098977 70-71 22.36195060510564 27.636124575981537 27.72456521956441 22.27735959934841 72-73 22.338051315413768 27.801472845749313 27.588475055060908 22.272000783776008 74-75 22.219932941432333 27.777129509876374 27.609675672382654 22.39326187630864 76-77 22.314176565274792 27.731889222414548 27.58012536428095 22.37380884802971 78-79 22.184138584754027 27.790568749299272 27.609033215263963 22.416259450682734 80-81 22.31893295895184 27.6664315575987 27.654956262765424 22.35967922068404 82-83 22.5065349616622 27.51028080746988 27.82033501593076 22.162849214937168 84-85 22.47044382171105 27.53213990820045 27.676691137255823 22.32072513283268 86-87 22.265485809297722 27.702482961516267 27.693416588409704 22.338614640776306 88-89 22.559193730125358 27.465804930713166 27.54048045526904 22.434520883892436 90-91 22.495048820035866 27.466439020724888 27.616498089002565 22.422014070236685 92-93 22.55656824270821 27.43745748552041 27.731873472308493 22.274100799462886 94-95 22.28431474813595 27.574965336650255 27.794471183415126 22.346248731798664 96-97 22.29124049854859 27.629196262517635 27.870610274837475 22.208952964096294 98-99 23.505861068958396 29.554432827997136 27.971623601540195 18.96808250150427 100 22.361347572468247 30.58136931963493 22.015019101394316 25.042264006502506 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5438.0 1 4572.5 2 5807.0 3 8282.5 4 10820.0 5 17357.0 6 23300.0 7 28697.5 8 33452.5 9 33342.0 10 28711.5 11 24116.5 12 25342.0 13 33296.5 14 52284.5 15 78036.0 16 98379.0 17 109332.0 18 109846.5 19 101343.5 20 88811.5 21 76178.5 22 67477.5 23 66717.0 24 73989.0 25 88241.0 26 107817.0 27 128838.0 28 149465.0 29 172258.5 30 194657.5 31 215003.5 32 236906.0 33 258333.0 34 277128.0 35 294599.5 36 316195.0 37 337240.5 38 351168.5 39 361225.5 40 371055.0 41 380188.5 42 385943.0 43 390956.5 44 397476.0 45 411370.5 46 426643.0 47 441225.5 48 444397.0 49 434457.5 50 426003.5 51 418901.0 52 395367.0 53 360153.5 54 335712.5 55 315895.5 56 294349.5 57 265610.5 58 236079.5 59 207717.5 60 177383.5 61 153444.5 62 126556.5 63 102097.0 64 85389.5 65 66882.5 66 54063.5 67 40614.5 68 26138.5 69 18506.0 70 12921.0 71 7957.0 72 5410.0 73 4015.5 74 3265.5 75 2522.0 76 1616.5 77 853.5 78 636.0 79 551.5 80 375.5 81 227.0 82 175.0 83 124.0 84 83.5 85 57.0 86 41.0 87 29.5 88 21.0 89 17.5 90 14.0 91 11.0 92 8.0 93 6.0 94 2.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0011651664390192394 5 0.0 6 1.274400792677293E-4 7 0.0 8 0.0 9 0.0 10-11 0.004487711362785039 12-13 2.2757157012094518E-5 14-15 0.0012516436356651986 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 276.0 20-21 872.0 22-23 1981.0 24-25 4956.0 26-27 6600.0 28-29 11604.0 30-31 21780.0 32-33 27662.0 34-35 39307.0 36-37 52137.0 38-39 62756.0 40-41 69556.0 42-43 88795.0 44-45 108092.0 46-47 104804.0 48-49 91648.0 50-51 77607.0 52-53 74027.0 54-55 79604.0 56-57 86505.0 58-59 86459.0 60-61 87337.0 62-63 85910.0 64-65 91470.0 66-67 97680.0 68-69 98241.0 70-71 96285.0 72-73 91485.0 74-75 95574.0 76-77 93241.0 78-79 101475.0 80-81 105100.0 82-83 101449.0 84-85 102661.0 86-87 108441.0 88-89 116530.0 90-91 123937.0 92-93 126683.0 94-95 144802.0 96-97 352961.0 98-99 644741.0 100-101 7022524.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.82679234763691 #Duplication Level Percentage of deduplicated Percentage of total 1 87.65144691354064 70.84585298650669 2 8.085221714767785 13.070050732482812 3 2.195369331725952 5.3233398330535175 4 0.8858038806650586 2.8638674529298256 5 0.4382128309193718 1.7709668744395095 6 0.24055794744594505 1.1666116359472292 7 0.14369425163658897 0.8130041807005762 8 0.08697150384301319 0.5623702145024746 9 0.060039680549532015 0.4367533313155931 >10 0.2060030980958001 2.632166899734682 >50 0.005438034244961868 0.30050168312126746 >100 0.0011735726893678695 0.15056511111093449 >500 2.2413599975913512E-5 0.01056174104962422 >1k 4.482627605500593E-5 0.05338732310516162 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 9.102862804837808E-6 9.102862804837808E-6 2 0.0 1.8205725609675616E-5 0.0 9.102862804837808E-6 9.102862804837808E-6 3 0.0 1.8205725609675616E-5 0.0 1.8205725609675616E-5 9.102862804837808E-6 4 0.0 5.461717682902685E-5 0.0 1.8205725609675616E-5 9.102862804837808E-6 5 0.0 7.282290243870246E-5 0.0 1.8205725609675616E-5 9.102862804837808E-6 6 0.0 7.282290243870246E-5 0.0 1.8205725609675616E-5 9.102862804837808E-6 7 0.0 9.102862804837807E-5 0.0 5.461717682902685E-5 9.102862804837808E-6 8 0.0 1.092343536580537E-4 0.0 5.461717682902685E-5 9.102862804837808E-6 9 0.0 1.7295439329191833E-4 0.0 6.372003963386465E-5 9.102862804837808E-6 10-11 0.0 1.7295439329191833E-4 0.0 6.372003963386465E-5 9.102862804837808E-6 12-13 0.0 1.8205725609675614E-4 0.0 7.282290243870246E-5 1.3654294207256712E-5 14-15 0.0 2.503287271330397E-4 0.0 1.1378578506047259E-4 2.275715701209452E-5 16-17 0.0 2.548801585354586E-4 0.0 1.4109437347498602E-4 2.7308588414513423E-5 18-19 0.0 2.8218874694997204E-4 0.0 1.6385153048708055E-4 3.1860019816932326E-5 20-21 0.0 3.0949733536448547E-4 0.0 2.0481441310885067E-4 4.096288262177014E-5 22-23 0.0 3.3225449237657997E-4 0.0 2.3667443292578298E-4 5.006574542660794E-5 24-25 0.0 3.550116493886745E-4 0.0 2.9584304115722873E-4 6.827147103628356E-5 26-27 0.0 3.641145121935123E-4 0.0 4.4148884603463365E-4 7.282290243870246E-5 28-29 0.0 3.641145121935123E-4 0.0 0.0010058663399345777 7.282290243870246E-5 30-31 0.0 4.3238598322979584E-4 0.0 0.002080004150905439 7.737433384112137E-5 32-33 0.0 4.369374146322148E-4 0.0 0.003827753809434298 9.102862804837807E-5 34-35 0.0 5.507231996926873E-4 0.0 0.006540406925275965 9.102862804837807E-5 36-37 0.0 6.645089847531599E-4 0.0 0.009944877614285304 9.558005945079698E-5 38-39 0.0 6.781632789604167E-4 0.0 0.01439617752585099 1.0013149085321588E-4 40-41 0.0 7.737433384112137E-4 0.0 0.019416406362719046 1.0013149085321588E-4 42-43 0.0 7.965004954233082E-4 0.0 0.023908669156906502 1.0013149085321588E-4 44-45 0.0 9.148377118861997E-4 0.0 0.0288924865425552 1.0013149085321588E-4 46-47 0.0 0.001001314908532159 0.0 0.03396733255625228 1.0013149085321588E-4 48-49 0.0 0.0010058663399345777 0.0 0.03928340443427756 1.092343536580537E-4 50-51 0.0 0.0010695863795684422 0.0 0.04419895034888997 1.1833721646289149E-4 52-53 0.0 0.0010786892423732802 0.0 0.04915090771472175 1.228886478653104E-4 54-55 0.0 0.0010968949679829557 0.0 0.05409376221774867 1.319915106701482E-4 56-57 0.0 0.0011287549877998882 0.0 0.05842672491285147 1.365429420725671E-4 58-59 0.0 0.0011287549877998882 0.0 0.06309194210033084 1.365429420725671E-4 60-61 0.0 0.0011333064192023071 0.0 0.06784818791585859 1.365429420725671E-4 62-63 0.0 0.0011469607134095637 0.0 0.07272277094784924 1.365429420725671E-4 64-65 0.0 0.0012835036554821309 0.0 0.07690553640667222 1.365429420725671E-4 66-67 0.0 0.0012880550868845497 0.0 0.08192121381213785 1.365429420725671E-4 68-69 0.0 0.0013244665381039011 0.0 0.0872554914157728 1.365429420725671E-4 70-71 0.0 0.0013517751265184144 0.0 0.09168403417032639 1.6385153048708055E-4 72-73 0.0 0.0013745322835305089 0.0 0.09570294809866228 1.8205725609675614E-4 74-75 0.0 0.0014245980289571169 0.0 0.09877971572669747 1.8205725609675614E-4 76-77 0.0 0.0014928694999934004 0.0 0.1019884748654028 1.8205725609675614E-4 78-79 0.0 0.0015201780884079139 0.0 0.10402296470228405 1.8205725609675614E-4 80-81 0.0 0.0015201780884079139 0.0 0.10469202511843961 1.8660868749917505E-4 82-83 0.0 0.0015292809512127516 0.0 0.10519723400410813 1.9116011890159395E-4 84-85 0.0 0.0015383838140175894 0.0 0.10539294555441214 1.9116011890159395E-4 86-87 0.0 0.0015747952652369406 0.0 0.10549762847666777 1.9116011890159395E-4 88 0.0 0.0016749267560901566 0.0 0.10551128277087503 1.9116011890159395E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21195 0.0 54.844025 1 GTATCAA 39555 0.0 38.847527 1 TCAACGC 51865 0.0 29.27664 4 ATCAACG 51955 0.0 29.21697 3 TATCAAC 52415 0.0 29.065664 2 CAACGCA 52895 0.0 28.724272 5 AACGCAG 53950 0.0 28.225412 6 ACGCAGA 60530 0.0 25.149895 7 GTGGTAT 8325 0.0 24.943005 1 CGCAGAG 64470 0.0 23.64641 8 TGGTATC 8325 0.0 23.568594 2 GCAGAGT 68480 0.0 22.051714 9 GTACATG 44400 0.0 22.019201 1 TACATGG 44055 0.0 21.720293 2 ACATGGG 44740 0.0 20.970972 3 GAGTACT 43735 0.0 20.721869 12-13 CAGAGTA 67700 0.0 19.610416 10-11 AGAGTAC 64640 0.0 19.58476 10-11 CATGGGG 31220 0.0 19.166843 4 AGTACTT 48510 0.0 18.33707 12-13 >>END_MODULE