##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139235_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10715245 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52659038594078 33.0 33.0 33.0 33.0 33.0 2 32.54567357069297 33.0 33.0 33.0 33.0 33.0 3 32.5412465137288 33.0 33.0 33.0 33.0 33.0 4 36.445762929359056 37.0 37.0 37.0 37.0 37.0 5 36.48110985796405 37.0 37.0 37.0 37.0 37.0 6 36.480332460900335 37.0 37.0 37.0 37.0 37.0 7 36.45970680091776 37.0 37.0 37.0 37.0 37.0 8 36.452239869457024 37.0 37.0 37.0 37.0 37.0 9 36.47803638647553 37.0 37.0 37.0 37.0 37.0 10-11 36.42814611331799 37.0 37.0 37.0 37.0 37.0 12-13 36.409255877957065 37.0 37.0 37.0 37.0 37.0 14-15 38.354765430001834 40.0 37.0 40.0 37.0 40.0 16-17 38.31939419024017 40.0 37.0 40.0 37.0 40.0 18-19 38.34447000511888 40.0 37.0 40.0 37.0 40.0 20-21 38.339381843407295 40.0 37.0 40.0 37.0 40.0 22-23 38.33747639238344 40.0 37.0 40.0 37.0 40.0 24-25 38.31151045044763 40.0 37.0 40.0 37.0 40.0 26-27 38.18649973850379 40.0 37.0 40.0 37.0 40.0 28-29 38.127596944798086 40.0 37.0 40.0 33.0 40.0 30-31 38.05588169378978 40.0 37.0 40.0 33.0 40.0 32-33 37.9791069761352 40.0 37.0 40.0 33.0 40.0 34-35 37.957158711903475 40.0 37.0 40.0 33.0 40.0 36-37 37.89361638779418 40.0 37.0 40.0 33.0 40.0 38-39 37.831922982676524 40.0 37.0 40.0 33.0 40.0 40-41 37.80896381898627 40.0 37.0 40.0 33.0 40.0 42-43 37.75589929965251 40.0 37.0 40.0 33.0 40.0 44-45 37.684042304589724 40.0 37.0 40.0 33.0 40.0 46-47 37.637904258948396 40.0 37.0 40.0 33.0 40.0 48-49 37.615204059543714 40.0 37.0 40.0 33.0 40.0 50-51 37.5187421811235 40.0 37.0 40.0 33.0 40.0 52-53 37.411498643287985 40.0 37.0 40.0 33.0 40.0 54-55 37.22950637645609 40.0 37.0 40.0 33.0 40.0 56-57 37.109175619349486 37.0 37.0 40.0 33.0 40.0 58-59 36.98394581968524 37.0 37.0 40.0 33.0 40.0 60-61 36.83771592020922 37.0 37.0 40.0 33.0 40.0 62-63 36.67446541731072 37.0 37.0 40.0 33.0 40.0 64-65 36.483673420042926 37.0 37.0 40.0 33.0 40.0 66-67 36.27242913922197 37.0 37.0 40.0 33.0 40.0 68-69 36.057529806664775 37.0 37.0 40.0 33.0 40.0 70-71 35.79758371781344 37.0 33.0 37.0 33.0 40.0 72-73 35.60490469244266 37.0 33.0 37.0 33.0 40.0 74-75 35.41392244072922 37.0 33.0 37.0 33.0 40.0 76-77 33.59050197500634 35.0 33.0 37.0 27.0 37.0 78-79 34.90363655457122 37.0 33.0 37.0 33.0 37.0 80-81 34.9664966918142 37.0 33.0 37.0 33.0 37.0 82-83 34.838713269405496 37.0 33.0 37.0 33.0 37.0 84-85 34.693454884641255 37.0 33.0 37.0 33.0 37.0 86-87 34.59752966239495 37.0 33.0 37.0 33.0 37.0 88-89 34.48056163797784 37.0 33.0 37.0 30.0 37.0 90-91 34.419179841561714 37.0 33.0 37.0 30.0 37.0 92-93 34.352292155962616 37.0 33.0 37.0 27.0 37.0 94-95 34.37402736925745 37.0 33.0 37.0 33.0 37.0 96-97 34.36134252047922 37.0 33.0 37.0 33.0 37.0 98-99 34.36163555104975 37.0 33.0 37.0 33.0 37.0 100 34.3414943985445 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 3.0 19 15.0 20 103.0 21 460.0 22 1791.0 23 5271.0 24 12221.0 25 24124.0 26 41443.0 27 65560.0 28 96320.0 29 134159.0 30 180533.0 31 237815.0 32 312480.0 33 414701.0 34 563523.0 35 805855.0 36 1376606.0 37 3073049.0 38 3297946.0 39 71264.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.64458208841702 20.048034365989764 14.042889359972637 24.26449418562058 2 14.531874912799475 20.991773869846185 41.70967626031883 22.766674957035512 3 18.04924665744927 26.265344376166855 30.483894675296742 25.20151429108714 4 12.35838000104152 18.2144611006617 38.46815312719841 30.95900577109837 5 13.404303867993686 37.69786878414819 35.538048826695054 13.35977852116307 6 30.006900457218283 37.71347181283616 18.72602478415773 13.55360294578783 7 26.40745965211248 32.52432398885887 23.120115312342367 17.948101046686286 8 24.44749513426898 36.80319022103554 21.021469877730283 17.727844766965198 9 25.499818249606054 16.682810332381575 20.982693349522105 36.83467806849027 10-11 24.25207740462455 26.604983829860945 28.737107099965915 20.405831665548586 12-13 25.163066779079745 24.152688292060972 28.766181855715438 21.918063073143845 14-15 22.262819636391804 25.445882238204852 26.329126032829357 25.962172092573987 16-17 21.948420218109803 28.71100474137549 26.8964498711882 22.444125169326508 18-19 21.993575508539468 27.772594093742143 28.50214810767276 21.731682290045633 20-21 22.794553304897136 26.84606977531074 28.506426749493656 21.852950170298467 22-23 22.444715329155258 27.0574064541601 28.312061053597372 22.185817163087272 24-25 22.396530121165785 27.155192553657425 28.456826552315995 21.991450772860794 26-27 22.300057881016873 27.256159640289745 28.459184544442408 21.984597934250974 28-29 22.039293296969202 27.142354856399265 28.55185902117891 22.266492825452627 30-31 22.48949924127608 26.86737064387273 28.61217144780349 22.030958667047702 32-33 22.256516915653105 27.231056748033584 28.384416535444064 22.12800980086925 34-35 22.31328658170046 27.265658582626656 28.52371982146918 21.897335014203705 36-37 22.571073138546417 27.112112003457646 28.191824988546184 22.12498986944976 38-39 22.280450780876794 27.167124270219983 28.35118114868186 22.201243800221363 40-41 22.39182742732411 26.991907086455626 28.378373177707093 22.237892308513175 42-43 22.381920191610817 27.105671312464853 28.17248316778722 22.33992532813711 44-45 22.259787368030263 27.247324700997407 28.040010693409545 22.45287723756278 46-47 22.573863410516708 27.11058667529236 27.67385650163642 22.641693412554513 48-49 22.563949855440736 27.315048218678772 27.575051591395077 22.54595033448541 50-51 22.475330020303392 27.419178593563004 27.640372188153712 22.465119197979895 52-53 22.675665772829902 27.428466572130418 27.607794917271566 22.288072737768115 54-55 22.571251887972814 27.414264012608964 27.38556394588379 22.62892015353443 56-57 22.713189699022422 27.656609011185125 27.146293691914387 22.48390759787807 58-59 22.49896369272923 27.688160913461417 27.475278468229565 22.337596925579792 60-61 22.706459077622604 27.81264209158818 27.155047296200063 22.32585153458915 62-63 22.51424753977258 27.94007928078446 27.25205629612751 22.293616883315455 64-65 22.679808385522122 27.67961435089387 27.182813551584584 22.457763711999426 66-67 22.648152128810477 27.651756899581148 27.084052277907457 22.616038693700922 68-69 22.633161394089065 27.55327262678467 27.195117682775134 22.618448296351133 70-71 22.660240524615844 27.43122380123436 27.18705138466988 22.721484289479918 72-73 22.690282676317914 27.45837894868806 27.12809132159429 22.723247053399735 74-75 22.592223491439327 27.5919881269047 27.085160893373008 22.730627488282977 76-77 22.719424034432244 27.55183622035401 27.001146783414615 22.727592961799132 78-79 22.5997280015465 27.554336387757072 27.079311100613563 22.766624510082867 80-81 22.5878826718081 27.545175194138377 27.156261321123015 22.710680812930505 82-83 22.740650453936823 27.429497939929824 27.202727604607922 22.62712400152543 84-85 22.71077327222424 27.469412849677223 27.181656093675766 22.63815778442277 86-87 22.58842204340132 27.558323850330694 27.174160720425437 22.679093385842545 88-89 22.70598467211354 27.470717603476846 27.088184018937405 22.73511370547221 90-91 22.686959811840644 27.5685221282847 27.098970166432494 22.64554789344216 92-93 22.745728156312648 27.49301085429417 27.18330262389203 22.577958365501154 94-95 22.485974718351102 27.623687273467546 27.229554362625997 22.660783645555355 96-97 22.608886302244365 27.734338060772878 27.2372165644884 22.419559072494362 98-99 23.786059599014035 29.619891051222474 27.42892807315458 19.16512127660891 100 22.586080368068345 30.73258476170403 21.31694131098685 25.364393559240778 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2509.0 1 2177.0 2 2961.0 3 4266.5 4 5643.0 5 9217.5 6 12297.0 7 14358.5 8 15752.0 9 15407.5 10 13754.5 11 12133.0 12 12908.5 13 16781.5 14 26218.0 15 39583.5 16 50664.0 17 56921.5 18 57950.0 19 54496.5 20 49179.0 21 44340.5 22 42299.0 23 44710.5 24 51290.0 25 62874.0 26 78158.0 27 95483.5 28 115818.0 29 138453.5 30 160365.0 31 182371.0 32 205361.0 33 227082.5 34 247824.0 35 266887.5 36 288120.0 37 309560.5 38 327307.5 39 342293.5 40 356378.0 41 371094.5 42 381921.0 43 391403.5 44 400132.5 45 413540.5 46 436571.0 47 461655.5 48 470345.5 49 463862.0 50 459395.5 51 453700.5 52 431206.0 53 397314.0 54 369321.0 55 344900.0 56 318133.5 57 287363.0 58 256533.0 59 222071.0 60 184153.5 61 153169.5 62 124832.5 63 98920.0 64 77362.0 65 56371.5 66 41885.0 67 31357.0 68 21163.5 69 14351.5 70 10271.5 71 7423.0 72 5323.0 73 3735.5 74 2712.5 75 1978.0 76 1277.0 77 720.0 78 513.0 79 398.5 80 267.5 81 167.5 82 128.0 83 83.5 84 53.5 85 41.0 86 31.5 87 22.5 88 14.0 89 9.5 90 9.0 91 9.0 92 7.0 93 4.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0011852272159899283 5 0.0 6 1.2132247092810291E-4 7 0.0 8 0.0 9 0.0 10-11 0.0040409715316821965 12-13 2.799749329110067E-5 14-15 0.0013065496869180313 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 213.0 20-21 810.0 22-23 1672.0 24-25 3358.0 26-27 4906.0 28-29 8264.0 30-31 17673.0 32-33 21661.0 34-35 29478.0 36-37 41442.0 38-39 49667.0 40-41 52231.0 42-43 63107.0 44-45 74960.0 46-47 73018.0 48-49 67197.0 50-51 60166.0 52-53 59407.0 54-55 68491.0 56-57 72595.0 58-59 73356.0 60-61 75713.0 62-63 74924.0 64-65 78363.0 66-67 81655.0 68-69 73722.0 70-71 73283.0 72-73 70221.0 74-75 72023.0 76-77 70655.0 78-79 77619.0 80-81 79568.0 82-83 78486.0 84-85 79459.0 86-87 84954.0 88-89 92847.0 90-91 99512.0 92-93 105103.0 94-95 130930.0 96-97 367642.0 98-99 679298.0 100-101 7325596.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.78497330360777 #Duplication Level Percentage of deduplicated Percentage of total 1 87.95565012821272 71.93450497637343 2 8.131180467574675 13.300167549348235 3 2.1204703532471796 5.202678336942368 4 0.7757456808727711 2.5377735920227447 5 0.37945067402418586 1.5516681622552007 6 0.20031542532725718 0.9829675027614337 7 0.11339816014400057 0.6491985850038727 8 0.08175805799766361 0.5349264472554986 9 0.053091308547304004 0.3907864126975375 >10 0.1817647967982562 2.3940383245021857 >50 0.005406334746172473 0.2967155452811844 >100 0.0017460212919861696 0.21324864277230066 >500 2.2591215879646886E-5 0.011325922784067447 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8664995527400448E-5 2 0.0 2.799749329110067E-5 0.0 9.332497763700224E-6 1.8664995527400448E-5 3 0.0 2.799749329110067E-5 0.0 9.332497763700224E-6 1.8664995527400448E-5 4 0.0 9.332497763700224E-5 0.0 9.332497763700224E-6 1.8664995527400448E-5 5 0.0 1.0265747540070246E-4 0.0 9.332497763700224E-6 1.8664995527400448E-5 6 0.0 1.0265747540070246E-4 0.0 9.332497763700224E-6 1.8664995527400448E-5 7 0.0 1.1198997316440267E-4 0.0 9.332497763700224E-6 1.8664995527400448E-5 8 0.0 1.1198997316440267E-4 0.0 9.332497763700224E-6 5.599498658220134E-5 9 1.8664995527400448E-5 2.5197743961990603E-4 0.0 5.599498658220134E-5 5.599498658220134E-5 10-11 1.8664995527400448E-5 2.5197743961990603E-4 0.0 7.465998210960179E-5 5.599498658220134E-5 12-13 1.8664995527400448E-5 2.5197743961990603E-4 0.0 1.1198997316440267E-4 7.465998210960179E-5 14-15 2.7997493291100672E-5 3.872986571935593E-4 0.0 1.1198997316440267E-4 1.0732372428255257E-4 16-17 4.666248881850112E-5 4.012974038391096E-4 0.0 1.1198997316440267E-4 1.3065496869180314E-4 18-19 4.666248881850112E-5 4.432936437757606E-4 0.0 1.1665622204625278E-4 1.633187108647539E-4 20-21 4.666248881850112E-5 5.039548792398121E-4 0.0 1.3532121757365325E-4 1.7731745751030424E-4 22-23 5.599498658220134E-5 6.112786035223646E-4 0.0 1.4931996421920358E-4 1.959824530377047E-4 24-25 6.532748434590157E-5 6.952710833956666E-4 0.0 1.7731745751030424E-4 2.1464744856510514E-4 26-27 6.999373322775167E-5 7.279348255686174E-4 0.0 2.333124440925056E-4 2.1464744856510514E-4 28-29 7.932623099145191E-5 7.279348255686174E-4 0.0 4.246286482483602E-4 2.379786929743557E-4 30-31 9.332497763700224E-5 8.492572964967204E-4 0.0 8.305923009693198E-4 2.426449418562058E-4 32-33 9.332497763700224E-5 8.77254789787821E-4 0.0 0.001997154521431848 2.5197743961990603E-4 34-35 1.0265747540070245E-4 0.001049905998416275 0.0 0.003644340376724937 2.799749329110067E-4 36-37 1.1665622204625278E-4 0.0012318897048084294 0.0 0.005856142346721891 2.799749329110067E-4 38-39 1.213224709281029E-4 0.0012645534469813802 0.0 0.009089852821844017 3.0330617732025726E-4 40-41 1.2598871980995302E-4 0.0013998746645550336 0.0 0.01211358209728289 3.0797242620210735E-4 42-43 1.3065496869180314E-4 0.0014325384067279843 0.0 0.015020655150675511 3.1263867508395744E-4 44-45 1.3065496869180314E-4 0.0015538608776560874 0.0 0.018515675563181243 3.173049239658076E-4 46-47 1.586524619829038E-4 0.0016518521041749396 0.0 0.022323334650770934 3.2197117284765773E-4 48-49 1.586524619829038E-4 0.0016518521041749396 0.0 0.02592101253867737 3.4530241725690825E-4 50-51 1.586524619829038E-4 0.0018291695616852437 0.0 0.02946269544000161 3.499686661387584E-4 52-53 1.586524619829038E-4 0.001838502059448944 0.0 0.03312103456337209 3.8263240831170914E-4 54-55 1.633187108647539E-4 0.0018664995527400447 0.0 0.036606722478114126 3.919649060754094E-4 56-57 1.8664995527400448E-4 0.0019038295437948456 0.0 0.04045171155675862 3.919649060754094E-4 58-59 2.0531495080140493E-4 0.0019038295437948456 0.0 0.04441335685744936 3.966311549572595E-4 60-61 2.0531495080140493E-4 0.0019458257837314964 0.0 0.048118358469638356 4.059636527209597E-4 62-63 2.1464744856510514E-4 0.0019878220236681475 0.0 0.052411307440940455 4.1996239936651004E-4 64-65 2.1931369744695523E-4 0.002333124440925056 0.0 0.056503607710323006 4.246286482483602E-4 66-67 2.2864619521065547E-4 0.0023937856763891073 0.0 0.060679900459578856 4.386273948939105E-4 68-69 2.426449418562058E-4 0.00250110940067166 0.0 0.06509417190180905 4.386273948939105E-4 70-71 2.426449418562058E-4 0.0025431056406083107 0.0 0.06893916098045355 4.61958639303161E-4 72-73 2.426449418562058E-4 0.0025617706361357115 0.0 0.07232219141979487 5.319523725309127E-4 74-75 2.426449418562058E-4 0.0026224318715997626 0.0 0.0749772870335676 5.319523725309127E-4 76-77 2.5197743961990603E-4 0.0027530868402915656 0.0 0.07760438515404922 5.319523725309127E-4 78-79 2.5197743961990603E-4 0.002809081826873767 0.0 0.07934956223586115 5.412848702946129E-4 80-81 2.566436885017561E-4 0.002809081826873767 0.0 0.07986284961286466 5.506173680583132E-4 82-83 2.6130993738360627E-4 0.0028137480757556175 0.0 0.08033414074993152 5.786148613494139E-4 84-85 2.6130993738360627E-4 0.0028184143246374675 0.0 0.08053478945185108 5.786148613494139E-4 86-87 2.7064243514730645E-4 0.0029210718000381697 0.0 0.08063744692725178 5.879473591131142E-4 88 2.7064243514730645E-4 0.0030983892575484743 0.0 0.08065144567389733 6.159448524042147E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14870 0.0 44.100754 1 CTTATAC 8560 0.0 36.634975 1 GTATCAA 26150 0.0 34.916443 1 TATACAC 12480 0.0 28.772066 3 TCAACGC 30930 0.0 28.722141 4 ATCAACG 31175 0.0 28.468632 3 CAACGCA 31670 0.0 28.053381 5 TATCAAC 32385 0.0 27.672457 2 AACGCAG 32385 0.0 27.460766 6 TTATACA 13180 0.0 24.713459 2 ACGCAGA 36935 0.0 24.089506 7 GTACATG 31735 0.0 22.957182 1 CGCAGAG 39545 0.0 22.489363 8 TACATGG 32310 0.0 22.052612 2 TACACAT 17025 0.0 21.398163 5 ACATGGG 32310 0.0 21.342102 3 ACACATC 15360 0.0 21.207731 6 ACATCTC 15675 0.0 21.003216 8 GCAGAGT 43885 0.0 19.999134 9 GAGTACT 24735 0.0 19.613516 12-13 >>END_MODULE