##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139232_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10764140 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.590837911807164 33.0 33.0 33.0 33.0 33.0 2 32.59949638336179 33.0 33.0 33.0 33.0 33.0 3 32.594659303948106 33.0 33.0 33.0 33.0 33.0 4 36.51401895553198 37.0 37.0 37.0 37.0 37.0 5 36.548640671711816 37.0 37.0 37.0 37.0 37.0 6 36.54513727989417 37.0 37.0 37.0 37.0 37.0 7 36.52672884224843 37.0 37.0 37.0 37.0 37.0 8 36.52004656201053 37.0 37.0 37.0 37.0 37.0 9 36.53872617784607 37.0 37.0 37.0 37.0 37.0 10-11 36.493410899523795 37.0 37.0 37.0 37.0 37.0 12-13 36.47687367499866 37.0 37.0 37.0 37.0 37.0 14-15 38.48894514564099 40.0 37.0 40.0 37.0 40.0 16-17 38.46094722848272 40.0 37.0 40.0 37.0 40.0 18-19 38.48729722021453 40.0 37.0 40.0 37.0 40.0 20-21 38.48218663496925 40.0 37.0 40.0 37.0 40.0 22-23 38.48074277811428 40.0 37.0 40.0 37.0 40.0 24-25 38.457182958204115 40.0 37.0 40.0 37.0 40.0 26-27 38.34571036876979 40.0 37.0 40.0 37.0 40.0 28-29 38.29492431289913 40.0 37.0 40.0 37.0 40.0 30-31 38.21908345160594 40.0 37.0 40.0 37.0 40.0 32-33 38.14126595694943 40.0 37.0 40.0 37.0 40.0 34-35 38.12148524825488 40.0 37.0 40.0 35.0 40.0 36-37 38.061897833221906 40.0 37.0 40.0 33.0 40.0 38-39 38.00718946341418 40.0 37.0 40.0 33.0 40.0 40-41 37.96543397362228 40.0 37.0 40.0 33.0 40.0 42-43 37.90009430244497 40.0 37.0 40.0 33.0 40.0 44-45 37.820941432028896 40.0 37.0 40.0 33.0 40.0 46-47 37.768578803699846 40.0 37.0 40.0 33.0 40.0 48-49 37.73142611456291 40.0 37.0 40.0 33.0 40.0 50-51 37.64156531422998 40.0 37.0 40.0 33.0 40.0 52-53 37.52247848856486 40.0 37.0 40.0 33.0 40.0 54-55 37.33147679222759 40.0 37.0 40.0 33.0 40.0 56-57 37.20929115848692 38.5 37.0 40.0 33.0 40.0 58-59 37.067701142762616 37.0 37.0 40.0 33.0 40.0 60-61 36.92052431154753 37.0 37.0 40.0 33.0 40.0 62-63 36.747094369880685 37.0 37.0 40.0 33.0 40.0 64-65 36.5414968897648 37.0 37.0 40.0 33.0 40.0 66-67 36.32039839946842 37.0 37.0 40.0 33.0 40.0 68-69 36.09654797696561 37.0 37.0 40.0 33.0 40.0 70-71 35.83709775708266 37.0 35.0 37.0 33.0 40.0 72-73 35.64233537554705 37.0 33.0 37.0 33.0 40.0 74-75 35.45404087746377 37.0 33.0 37.0 33.0 40.0 76-77 33.62139044909813 35.0 33.0 37.0 27.0 37.0 78-79 34.946907125868314 37.0 33.0 37.0 33.0 37.0 80-81 35.017208485005426 37.0 33.0 37.0 33.0 37.0 82-83 34.890185000681655 37.0 33.0 37.0 33.0 37.0 84-85 34.75349966275924 37.0 33.0 37.0 33.0 37.0 86-87 34.66299234413263 37.0 33.0 37.0 33.0 37.0 88-89 34.54991949936165 37.0 33.0 37.0 33.0 37.0 90-91 34.49216692816693 37.0 33.0 37.0 33.0 37.0 92-93 34.42369455813079 37.0 33.0 37.0 33.0 37.0 94-95 34.443685575375405 37.0 33.0 37.0 33.0 37.0 96-97 34.43118825430524 37.0 33.0 37.0 33.0 37.0 98-99 34.44413259806161 37.0 33.0 37.0 33.0 37.0 100 34.45209465692735 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 12.0 20 64.0 21 354.0 22 1494.0 23 4152.0 24 10067.0 25 20200.0 26 36156.0 27 57508.0 28 85632.0 29 120627.0 30 164078.0 31 219355.0 32 292907.0 33 394507.0 34 543324.0 35 789354.0 36 1396042.0 37 3208742.0 38 3348621.0 39 70944.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.32352050419262 19.65383207576267 13.986068557265142 24.03657886277956 2 15.00546258224066 20.908990407036697 41.135873372141205 22.949673638581437 3 18.320163059937904 25.961953300495903 30.020614744884405 25.697268894681784 4 12.630598680581834 17.924417783113263 38.34991625315043 31.095067283154464 5 13.780134780855693 37.37199627652558 35.1584334651909 13.68943547742783 6 30.412954878842974 37.38806573313403 18.57435761180885 13.624621776214148 7 26.933633341818297 32.3601049410357 22.89774194687174 17.808519770274263 8 24.89613661658061 36.22979634229952 20.700176697813294 18.173890343306574 9 26.0005815606263 16.523791032075017 20.879940246039162 36.59568716125952 10-11 24.667969097485308 26.46983693694359 28.3600664249937 20.5021275405774 12-13 25.49710791943227 24.149517241814987 28.395998136961566 21.957376701791176 14-15 22.58960321282962 25.233776442789065 26.2688035301475 25.90781681423382 16-17 22.162239621558246 28.37092884336324 26.813744525805127 22.653087009273385 18-19 22.170475300395573 27.466862192427822 28.60107263562161 21.761589871554996 20-21 23.11393388552063 26.560723283632328 28.58725675817354 21.7380860726735 22-23 22.852315789556815 26.534979983637186 28.33312404802478 22.27958017878122 24-25 22.5732055559012 26.69324388188234 28.516422941262103 22.217127620954354 26-27 22.44596250093305 26.785457494361513 28.467108536804265 22.301471467901173 28-29 22.49752451124441 26.85312465824864 28.412259453540038 22.23709137696691 30-31 22.777060801887114 26.594231965277576 28.33930532348899 22.28940190934632 32-33 22.61619847347375 26.726842582098964 28.23462858706441 22.422330357362878 34-35 22.73454628038001 26.828020963406413 28.180025197962998 22.257407558250577 36-37 22.834449647490075 26.717720344182684 28.030990691179763 22.41683931714748 38-39 22.517639465599384 27.046882125541543 28.127259546725554 22.308218862133522 40-41 22.766838002892957 26.763221148645638 28.092954997762277 22.37698585069913 42-43 22.606874862934035 26.918516304741697 27.812985484994567 22.6616233473297 44-45 22.632166672922903 27.0009324557774 27.687382965505495 22.679517905794206 46-47 22.800745892739776 26.991475566102842 27.413028509364047 22.79475003179334 48-49 22.850689213742406 27.235861244870136 27.213802987163344 22.699646554224117 50-51 22.817767208757708 27.259911873023835 27.16420703809912 22.758113880119335 52-53 23.061468921190624 27.169390057086346 27.02292801076344 22.74621301095959 54-55 23.040880065488867 27.086545848382613 27.033171293709536 22.839402792418984 56-57 23.02734395892977 27.27868644584609 26.911938416928077 22.782031178296066 58-59 22.851896311903218 27.263735724902705 27.081750919900134 22.80261704329395 60-61 22.96185942664544 27.276190152927672 27.00107752937576 22.76087289105113 62-63 22.981850015701433 27.292002624113238 27.046725998181685 22.67942136200364 64-65 23.016723878013245 27.19571117609198 26.96114274356054 22.826422202334236 66-67 23.084260142656856 27.292044377673413 26.746379493247463 22.87731598642227 68-69 23.018153815434268 27.260422242189954 26.837630611485647 22.88379333089014 70-71 23.019281497950846 27.09016799408839 26.856964911277974 23.03358559668279 72-73 23.042517756754695 27.144000549256358 26.730993351735062 23.082488342253885 74-75 22.89511430702417 27.224711812100438 26.74061820874489 23.1395556721305 76-77 23.013679837143016 27.228057104627634 26.677603695977865 23.080659362251485 78-79 22.921829767561466 27.229217251498728 26.70700759618577 23.14194538475404 80-81 22.967674312141174 27.27346987808342 26.712463891653528 23.046391918121877 82-83 23.099154066365205 27.13732360960614 26.869879631863157 22.8936426921655 84-85 23.08748657487574 27.188373685528365 26.762818630680496 22.961321108915396 86-87 22.891770298266504 27.34663373568979 26.775023496297806 22.986572469745894 88-89 23.079711132708855 27.16836090086882 26.683313161255207 23.06861480516712 90-91 23.08945994847565 27.23117576588579 26.728704019464754 22.950660266173806 92-93 23.086918261362218 27.264289706835765 26.78611561518558 22.862676416616438 94-95 22.881950016565288 27.377559579732193 26.832446598946508 22.908043804756016 96-97 22.91429216201105 27.42466291494451 26.91619572284311 22.74484920020133 98-99 23.184393752056263 28.17310313346624 26.00942499285522 22.633078121622283 100 21.091771686445735 28.004354143428735 27.233204430626667 23.670669739498866 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3805.0 1 3071.5 2 3280.0 3 4459.5 4 5930.0 5 9523.0 6 12644.0 7 14831.5 8 16522.5 9 16587.5 10 15257.5 11 13781.0 12 14746.5 13 19236.0 14 29838.5 15 44683.5 16 56874.0 17 63833.5 18 65134.0 19 60970.0 20 53368.5 21 45359.0 22 39912.0 23 39680.0 24 44456.5 25 54098.5 26 67993.5 27 83285.5 28 100948.5 29 121387.5 30 141066.5 31 160391.0 32 181107.0 33 203331.5 34 224690.5 35 244364.5 36 266680.0 37 286721.0 38 302404.5 39 319266.0 40 335708.5 41 350257.0 42 361007.0 43 371231.0 44 383080.5 45 399239.0 46 415184.0 47 429268.0 48 440136.0 49 443708.0 50 444614.0 51 441047.5 52 420896.0 53 392918.0 54 372755.5 55 352300.5 56 330927.5 57 303646.0 58 271161.5 59 237490.0 60 201328.0 61 170828.5 62 140443.5 63 112320.0 64 91150.5 65 71086.5 66 55981.5 67 40877.5 68 26471.5 69 19172.0 70 13573.5 71 8196.5 72 5428.0 73 3797.0 74 2808.0 75 2036.0 76 1283.0 77 694.0 78 506.0 79 405.5 80 267.5 81 162.0 82 126.5 83 82.0 84 47.5 85 32.0 86 24.0 87 21.5 88 17.5 89 11.5 90 8.0 91 5.5 92 4.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0014213861952743088 5 0.0 6 9.290105851466072E-5 7 0.0 8 0.0 9 0.0 10-11 0.003906489510541483 12-13 3.251537048013125E-5 14-15 0.0015839630476749654 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 215.0 20-21 736.0 22-23 1567.0 24-25 2953.0 26-27 3915.0 28-29 6015.0 30-31 11770.0 32-33 14823.0 34-35 20633.0 36-37 27837.0 38-39 33143.0 40-41 38760.0 42-43 50597.0 44-45 62169.0 46-47 59934.0 48-49 52065.0 50-51 43039.0 52-53 41004.0 54-55 44574.0 56-57 48883.0 58-59 51341.0 60-61 52961.0 62-63 54176.0 64-65 59275.0 66-67 64192.0 68-69 67491.0 70-71 67854.0 72-73 66066.0 74-75 70526.0 76-77 68481.0 78-79 76052.0 80-81 79176.0 82-83 78589.0 84-85 80485.0 86-87 87700.0 88-89 95034.0 90-91 101233.0 92-93 108339.0 94-95 136424.0 96-97 386640.0 98-99 52845.0 100-101 8294628.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.84298562315054 #Duplication Level Percentage of deduplicated Percentage of total 1 88.42171492622475 72.36697143481328 2 7.826314613980931 12.810579088685886 3 1.9482541779804234 4.783528160360842 4 0.7712809858708457 2.52495754552148 5 0.3568231869390369 1.460173747932918 6 0.1996364566640411 0.9803306191567097 7 0.11911618093733481 0.6824176718757224 8 0.08620260030059389 0.5644062541663758 9 0.055951590916874044 0.412132072590191 >10 0.2060082277414091 2.736020336327616 >50 0.006717865940408742 0.36919359398080254 >100 0.0018867380626383698 0.24527926069970746 >500 6.933664397271257E-5 0.037831321709715406 >1k 2.311179678774476E-5 0.026178892178788066 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.716042340586429E-5 0.0 0.0 0.0 3 0.0 3.716042340586429E-5 0.0 0.0 0.0 4 0.0 1.0219116436612679E-4 0.0 0.0 0.0 5 9.290105851466072E-6 1.30061481920525E-4 0.0 0.0 0.0 6 9.290105851466072E-6 1.30061481920525E-4 0.0 0.0 0.0 7 9.290105851466072E-6 1.30061481920525E-4 0.0 0.0 9.290105851466072E-6 8 9.290105851466072E-6 1.4864169362345715E-4 0.0 0.0 9.290105851466072E-6 9 9.290105851466072E-6 2.787031755439822E-4 0.0 0.0 1.8580211702932144E-5 10-11 9.290105851466072E-6 2.787031755439822E-4 0.0 0.0 1.8580211702932144E-5 12-13 9.290105851466072E-6 2.787031755439822E-4 0.0 0.0 1.8580211702932144E-5 14-15 9.290105851466072E-6 4.2734486916743927E-4 0.0 0.0 1.8580211702932144E-5 16-17 9.290105851466072E-6 4.4592508087037145E-4 0.0 0.0 1.8580211702932144E-5 18-19 9.290105851466072E-6 4.737953984247697E-4 0.0 2.7870317554398215E-5 2.7870317554398215E-5 20-21 9.290105851466072E-6 5.34181086459299E-4 0.0 4.1805476331597325E-5 2.7870317554398215E-5 22-23 9.290105851466072E-6 5.945667744938286E-4 0.0 6.967579388599554E-5 3.716042340586429E-5 24-25 9.290105851466072E-6 6.781777271570233E-4 0.0 9.754611144039376E-5 4.6450529257330355E-5 26-27 9.290105851466072E-6 7.153381505628875E-4 0.0 1.9973727580652054E-4 5.109558218306339E-5 28-29 9.290105851466072E-6 7.199832034886205E-4 0.0 6.54952462528358E-4 5.574063510879643E-5 30-31 9.290105851466072E-6 7.524985739687517E-4 0.0 0.0021088540282827983 5.574063510879643E-5 32-33 9.290105851466072E-6 7.617886798202179E-4 0.0 0.005332520758741525 5.574063510879643E-5 34-35 9.290105851466072E-6 8.453996324834126E-4 0.0 0.009276170692688872 7.432084681172857E-5 36-37 9.290105851466072E-6 9.336556380723402E-4 0.0 0.014325343222960682 7.432084681172857E-5 38-39 9.290105851466072E-6 9.754611144039376E-4 0.0 0.02662079831737603 7.432084681172857E-5 40-41 9.290105851466072E-6 0.0010915874375472634 0.0 0.03935753343973601 7.89658997374616E-5 42-43 9.290105851466072E-6 0.0011008775433987293 0.0 0.050435984667609304 8.825600558892768E-5 44-45 1.8580211702932144E-5 0.0011798434431361912 0.0 0.06454301040306054 9.290105851466071E-5 46-47 1.8580211702932144E-5 0.0012541642899479197 0.0 0.07879403277920949 9.290105851466071E-5 48-49 1.8580211702932144E-5 0.0012588093428736527 0.0 0.09249693891012195 1.0219116436612679E-4 50-51 1.8580211702932144E-5 0.0013842257718684446 0.0 0.10302262883983301 1.0219116436612679E-4 52-53 1.8580211702932144E-5 0.0014028059835713767 0.0 0.1296666524218377 1.0683621729185982E-4 54-55 1.8580211702932144E-5 0.0014120960894228429 0.0 0.16031935667875 1.1148127021759286E-4 56-57 1.8580211702932144E-5 0.001421386195274309 0.0 0.19194287699714052 1.1148127021759286E-4 58-59 1.8580211702932144E-5 0.001426031248200042 0.0 0.21197699026582711 1.1148127021759286E-4 60-61 1.8580211702932144E-5 0.0014678367245316393 0.0 0.22456972874748934 1.1148127021759286E-4 62-63 1.8580211702932144E-5 0.0015235773596404358 0.0 0.2334789402590453 1.2077137606905894E-4 64-65 1.8580211702932144E-5 0.0017279596883726894 0.0 0.2369348596357907 1.2077137606905894E-4 66-67 1.8580211702932144E-5 0.0017326047412984224 0.0 0.24046509985934778 1.2077137606905894E-4 68-69 1.8580211702932144E-5 0.001797635482258685 0.0 0.2438652786009844 1.2077137606905894E-4 70-71 1.8580211702932144E-5 0.00182086074688735 0.0 0.2470610750138887 1.2077137606905894E-4 72-73 1.8580211702932144E-5 0.0018347959056645492 0.0 0.249927072669066 1.2077137606905894E-4 74-75 1.8580211702932144E-5 0.0018812464349218794 0.0 0.25218456839097225 1.2077137606905894E-4 76-77 1.8580211702932144E-5 0.001955567281733608 0.0 0.2544559992716557 1.2077137606905894E-4 78-79 1.8580211702932144E-5 0.001978792546362273 0.0 0.25601209200177627 1.2077137606905894E-4 80-81 1.8580211702932144E-5 0.001978792546362273 0.0 0.25649982255897824 1.2541642899479197E-4 82-83 1.8580211702932144E-5 0.001983437599288006 0.0 0.2569178773222942 1.30061481920525E-4 84-85 1.8580211702932144E-5 0.0019927277051394725 0.0 0.25708045417469483 1.30061481920525E-4 86-87 1.8580211702932144E-5 0.0020345331814710698 0.0 0.25714548491565514 1.30061481920525E-4 88 1.8580211702932144E-5 0.002173884769243061 0.0 0.2571594200744323 1.30061481920525E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14520 0.0 54.790424 1 GTATCAA 26790 0.0 39.260017 1 TCAACGC 32820 0.0 31.362534 4 ATCAACG 33330 0.0 30.894869 3 CAACGCA 33975 0.0 30.323437 5 TATCAAC 34450 0.0 30.044062 2 AACGCAG 34525 0.0 29.840368 6 ACGCAGA 39110 0.0 26.387064 7 CGCAGAG 41905 0.0 24.648706 8 GTACATG 34530 0.0 22.835245 1 TACATGG 34635 0.0 22.307644 2 GCAGAGT 46305 0.0 22.297527 9 ACATGGG 35060 0.0 21.332842 3 GAGTACT 27110 0.0 20.764914 12-13 CAGAGTA 44895 0.0 20.060137 10-11 AGAGTAC 41960 0.0 19.881401 10-11 CATGGGG 26265 0.0 19.64524 4 GTGGTAT 6920 0.0 19.62815 1 TGGTATC 6245 0.0 19.48998 2 GTACTTT 30445 0.0 18.527018 14-15 >>END_MODULE