##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139230_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7711012 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59024418584746 33.0 33.0 33.0 33.0 33.0 2 32.60095471255913 33.0 33.0 33.0 33.0 33.0 3 32.59656112582888 33.0 33.0 33.0 33.0 33.0 4 36.516765892725886 37.0 37.0 37.0 37.0 37.0 5 36.550978003924776 37.0 37.0 37.0 37.0 37.0 6 36.548278358275155 37.0 37.0 37.0 37.0 37.0 7 36.5268994523676 37.0 37.0 37.0 37.0 37.0 8 36.52182126029631 37.0 37.0 37.0 37.0 37.0 9 36.53853696505725 37.0 37.0 37.0 37.0 37.0 10-11 36.494034829669566 37.0 37.0 37.0 37.0 37.0 12-13 36.47568425519245 37.0 37.0 37.0 37.0 37.0 14-15 38.48847842539993 40.0 37.0 40.0 37.0 40.0 16-17 38.45938548662614 40.0 37.0 40.0 37.0 40.0 18-19 38.491634431382025 40.0 37.0 40.0 37.0 40.0 20-21 38.487294895502856 40.0 37.0 40.0 37.0 40.0 22-23 38.48698762725448 40.0 37.0 40.0 37.0 40.0 24-25 38.46264510160006 40.0 37.0 40.0 37.0 40.0 26-27 38.349333383338006 40.0 37.0 40.0 37.0 40.0 28-29 38.2981680293377 40.0 37.0 40.0 37.0 40.0 30-31 38.22069079905795 40.0 37.0 40.0 37.0 40.0 32-33 38.14128629483926 40.0 37.0 40.0 37.0 40.0 34-35 38.11940755099657 40.0 37.0 40.0 35.0 40.0 36-37 38.05607122099352 40.0 37.0 40.0 33.0 40.0 38-39 37.999907955756115 40.0 37.0 40.0 33.0 40.0 40-41 37.95683242762462 40.0 37.0 40.0 33.0 40.0 42-43 37.891448423366484 40.0 37.0 40.0 33.0 40.0 44-45 37.81243866574201 40.0 37.0 40.0 33.0 40.0 46-47 37.754827085545834 40.0 37.0 40.0 33.0 40.0 48-49 37.714555680236515 40.0 37.0 40.0 33.0 40.0 50-51 37.6203234297221 40.0 37.0 40.0 33.0 40.0 52-53 37.50231716896554 40.0 37.0 40.0 33.0 40.0 54-55 37.314612762160486 40.0 37.0 40.0 33.0 40.0 56-57 37.19256771799209 38.5 37.0 40.0 33.0 40.0 58-59 37.05057208771845 37.0 37.0 40.0 33.0 40.0 60-61 36.904391577849196 37.0 37.0 40.0 33.0 40.0 62-63 36.738861067740224 37.0 37.0 40.0 33.0 40.0 64-65 36.53828709318151 37.0 37.0 40.0 33.0 40.0 66-67 36.31789278533829 37.0 37.0 40.0 33.0 40.0 68-69 36.09635477192086 37.0 37.0 40.0 33.0 40.0 70-71 35.83656720609638 37.0 35.0 37.0 33.0 40.0 72-73 35.649520227606295 37.0 33.0 37.0 33.0 40.0 74-75 35.458734871137096 37.0 33.0 37.0 33.0 40.0 76-77 33.60952761214496 35.0 33.0 37.0 27.0 37.0 78-79 34.933209889603106 37.0 33.0 37.0 33.0 37.0 80-81 34.99798174646286 37.0 33.0 37.0 33.0 37.0 82-83 34.87222316061771 37.0 33.0 37.0 33.0 37.0 84-85 34.736474353019666 37.0 33.0 37.0 33.0 37.0 86-87 34.645536722460704 37.0 33.0 37.0 33.0 37.0 88-89 34.53371344621672 37.0 33.0 37.0 33.0 37.0 90-91 34.48457928124887 37.0 33.0 37.0 33.0 37.0 92-93 34.42455159119261 37.0 33.0 37.0 33.0 37.0 94-95 34.43282113794851 37.0 33.0 37.0 33.0 37.0 96-97 34.416754061109486 37.0 33.0 37.0 33.0 37.0 98-99 34.41896164089174 37.0 33.0 37.0 33.0 37.0 100 34.39575749569663 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 2.0 19 10.0 20 56.0 21 282.0 22 1103.0 23 3176.0 24 7472.0 25 15004.0 26 26420.0 27 42347.0 28 62793.0 29 88535.0 30 120517.0 31 159715.0 32 211064.0 33 281561.0 34 386053.0 35 562559.0 36 995010.0 37 2289013.0 38 2406535.0 39 51784.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.33257580198293 19.66787238821571 14.118639680498488 23.88091212930287 2 14.997849828271567 20.917565683985448 41.17678717138555 22.90779731635744 3 18.28508372182536 26.020579399954247 30.118549938711027 25.575786939509364 4 12.569503802988727 18.021001155635478 38.24367529171982 31.165819749655977 5 13.769022794932754 37.431779382524624 35.07626495718072 13.7229328653619 6 30.391013983524584 37.34420801029386 18.60240490115229 13.662373105029268 7 26.96967661313457 32.458216898119204 22.798447207707625 17.773659281038597 8 25.07004268700399 36.11195262048613 20.576235648446666 18.241769044063215 9 26.161624440475517 16.445480826641173 20.841492660107388 36.55140207277592 10-11 24.71983358158192 26.535281884813088 28.196911169370814 20.547973364234178 12-13 25.59770862716372 24.21661856121192 28.23591668044026 21.949756131184103 14-15 22.670414526781542 25.215575013464726 26.2772943560723 25.83671610368143 16-17 22.139791767928777 28.391604111107593 26.76762142245402 22.700982698509613 18-19 22.17918348460617 27.448569655967336 28.577876678184396 21.794370181242098 20-21 23.246231308277284 26.51052437591803 28.56539804216598 21.6778462736387 22-23 22.95877104769153 26.463177195514003 28.334182546366737 22.24386921042773 24-25 22.628635039126866 26.63868159284656 28.573762725215264 22.15892064281131 26-27 22.48342450797454 26.71169242510055 28.50286487542501 22.3020181914999 28-29 22.53642650916361 26.78942319606663 28.441136042474728 22.233014252295032 30-31 22.873784727781686 26.444164981804004 28.40601480219538 22.27603548821893 32-33 22.66742246051349 26.605352500632957 28.2469864227003 22.480238616153258 34-35 22.832090999602336 26.733302262776785 28.206782695979815 22.22782404164106 36-37 22.95538627580657 26.587572110738122 28.03636383339055 22.420677780064754 38-39 22.52268989964405 26.952678156809505 28.111013501380295 22.413618442166147 40-41 22.811953974703155 26.65011716365498 28.144495277352956 22.393433584288914 42-43 22.586769125322927 26.835767385458954 27.81556782833342 22.761895660884697 44-45 22.61179268144415 26.89001958191891 27.682817305102596 22.815370431534344 46-47 22.77689691022836 26.84286699297064 27.530014796885837 22.850221299915155 48-49 22.869190174304997 27.18498883894891 27.22160443646919 22.724216550276903 50-51 22.863504473688646 27.19276795794227 27.152718755792204 22.79100881257688 52-53 23.05077264959713 27.07057973679265 27.020762099741464 22.85788551386876 54-55 23.1182845155003 26.853030013619676 27.139174518590025 22.889510952289996 56-57 23.045464781006142 27.009008978502724 26.956170752396158 22.989355488094976 58-59 22.738744331998124 26.845601631899036 27.28178459765434 23.133869438448503 60-61 22.904867627474236 26.930609611131544 27.307910966524485 22.856611794869732 62-63 22.72648441728468 27.0418327716552 27.39205224873768 22.839630562322437 64-65 22.74966173148556 27.072264131521166 27.18158215270651 22.996491984286756 66-67 22.83844599103651 27.453193748378208 26.75275341194322 22.955606848642056 68-69 22.800601065906974 27.419349655630594 26.722423377020753 23.05762590144168 70-71 22.796803407896316 27.09631621865411 26.677234223539724 23.42964614990985 72-73 22.845545024583927 26.95605612181511 26.602089534627115 23.596309318973844 74-75 22.868011388524184 26.905727748085877 26.72611650996646 23.500144353423476 76-77 23.05479050781376 26.91785355478849 26.408798372267718 23.61855756513003 78-79 23.048615612933084 26.957981683177085 26.27721185057277 23.71619085331707 80-81 23.099002880917677 27.0146362449726 26.35595982705708 23.530401047052646 82-83 23.177746377413904 26.819390648232805 26.558368658742694 23.444494315610598 84-85 23.181680854572942 27.012631774845786 26.45729625618817 23.34839111439311 86-87 23.236608174648836 27.134262526437798 26.39155749132015 23.237571807593216 88-89 23.35438821693423 26.96603037916746 26.485604101844956 23.193977302053355 90-91 23.29293008133686 26.81876406183501 26.530224386648243 23.358081470179883 92-93 23.299579674357517 26.617597500554126 26.75810092491593 23.324721900172428 94-95 22.79214706514993 26.98829617811125 27.033337917553396 23.18621883918543 96-97 22.85518256544244 26.90291937004787 27.129222010438475 23.11267605407122 98-99 24.129776360052215 28.778541986443702 27.37424659758404 19.717435055920046 100 22.892495309878715 30.019752617345812 21.156466047122972 25.931286025652494 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1716.0 1 1480.0 2 1921.0 3 2781.5 4 3852.5 5 6545.0 6 8855.5 7 10415.5 8 11627.5 9 11698.0 10 10685.5 11 9547.5 12 10389.5 13 13790.0 14 21626.5 15 32680.0 16 42145.0 17 47907.0 18 48810.0 19 45208.5 20 39420.0 21 33178.5 22 28600.0 23 27707.5 24 30584.5 25 37180.0 26 46767.5 27 57389.5 28 69172.0 29 83029.0 30 96701.5 31 109965.5 32 124836.0 33 140850.0 34 156268.0 35 170857.0 36 188433.0 37 204792.0 38 216716.5 39 228925.0 40 241332.5 41 251566.5 42 257942.0 43 264034.0 44 272766.5 45 286163.5 46 298741.5 47 312256.5 48 321281.0 49 320607.5 50 319806.5 51 319334.0 52 302876.5 53 278480.5 54 263899.0 55 250308.5 56 233758.5 57 212744.5 58 191280.5 59 168184.0 60 142804.0 61 122887.5 62 101854.0 63 83126.5 64 70346.0 65 55676.0 66 44699.5 67 32958.0 68 20304.5 69 14267.0 70 10222.5 71 6074.0 72 3953.5 73 2832.0 74 2269.5 75 1771.0 76 1146.5 77 577.0 78 426.5 79 374.5 80 249.5 81 151.5 82 123.5 83 83.5 84 50.5 85 33.0 86 25.0 87 21.5 88 16.5 89 9.5 90 5.5 91 3.5 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0013357520387726023 5 0.0 6 1.1671619756265455E-4 7 0.0 8 0.0 9 0.0 10-11 0.004240688511443115 12-13 1.9452699593775756E-5 14-15 0.0015951213666896124 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 538.0 22-23 1136.0 24-25 2359.0 26-27 2619.0 28-29 4521.0 30-31 8891.0 32-33 11211.0 34-35 15642.0 36-37 20523.0 38-39 18857.0 40-41 29160.0 42-43 37791.0 44-45 46556.0 46-47 45268.0 48-49 38919.0 50-51 22353.0 52-53 9988.0 54-55 9101.0 56-57 9462.0 58-59 24595.0 60-61 41072.0 62-63 42238.0 64-65 46971.0 66-67 50758.0 68-69 53332.0 70-71 53246.0 72-73 51823.0 74-75 55398.0 76-77 52854.0 78-79 59149.0 80-81 61732.0 82-83 61411.0 84-85 63031.0 86-87 68381.0 88-89 74557.0 90-91 79236.0 92-93 83882.0 94-95 98137.0 96-97 279708.0 98-99 531629.0 100-101 5442823.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.78395419102617 #Duplication Level Percentage of deduplicated Percentage of total 1 89.04726535885004 74.60732001662043 2 7.716144935007846 12.929782675320316 3 1.7975309799649448 4.51812759847 4 0.636942075842007 2.1346210281873534 5 0.29506905216904533 1.2361025975060402 6 0.1568760176751765 0.7886215847140561 7 0.08724995198807844 0.5117102186376878 8 0.06251524587453781 0.41902195972744105 9 0.04111360550285686 0.31001943960713524 >10 0.15377063064248508 2.0994414812617306 >50 0.004321814636530664 0.24614530152813216 >100 0.00114521726402044 0.15646456469230607 >500 2.7557291580455595E-5 0.016947023998677417 >1k 2.755729078255199E-5 0.02567450972872185 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2968466395850506E-5 2 0.0 1.2968466395850506E-5 0.0 0.0 1.2968466395850506E-5 3 0.0 1.2968466395850506E-5 0.0 0.0 1.2968466395850506E-5 4 0.0 1.5562159675020607E-4 0.0 1.2968466395850506E-5 1.2968466395850506E-5 5 0.0 1.6859006314605656E-4 0.0 1.2968466395850506E-5 1.2968466395850506E-5 6 5.187386558340202E-5 1.6859006314605656E-4 0.0 1.2968466395850506E-5 3.890539918755152E-5 7 5.187386558340202E-5 1.6859006314605656E-4 0.0 1.2968466395850506E-5 3.890539918755152E-5 8 5.187386558340202E-5 1.6859006314605656E-4 0.0 1.2968466395850506E-5 5.187386558340202E-5 9 5.187386558340202E-5 2.853062607087111E-4 0.0 1.2968466395850506E-5 5.187386558340202E-5 10-11 5.187386558340202E-5 2.853062607087111E-4 0.0 5.8358098781327274E-5 6.484233197925253E-5 12-13 5.187386558340202E-5 2.853062607087111E-4 0.0 6.484233197925253E-5 8.429503157302828E-5 14-15 5.187386558340202E-5 4.085066914692909E-4 0.0 7.132656517717779E-5 1.232004307605798E-4 16-17 7.781079837510304E-5 4.149909246672162E-4 0.0 1.1023196436472929E-4 1.2968466395850507E-4 18-19 7.781079837510304E-5 4.5389632385476773E-4 0.0 1.361688971564303E-4 1.2968466395850507E-4 20-21 7.781079837510304E-5 4.992859562402445E-4 0.0 1.4913736355228081E-4 1.4265313035435556E-4 22-23 7.781079837510304E-5 5.770967546153475E-4 0.0 2.074954623336081E-4 1.4265313035435556E-4 24-25 7.781079837510304E-5 6.484233197925253E-4 0.0 3.6311705908381416E-4 1.4265313035435556E-4 26-27 7.781079837510304E-5 6.743602525842263E-4 0.0 0.0010698984776576666 1.4265313035435556E-4 28-29 7.781079837510304E-5 6.938129521780021E-4 0.0 0.0037089813892132446 1.4265313035435556E-4 30-31 7.781079837510304E-5 8.559187821261334E-4 0.0 0.006315643134779197 1.4913736355228081E-4 32-33 7.781079837510304E-5 8.818557149178344E-4 0.0 0.012864718664683701 2.0101122913568283E-4 34-35 7.781079837510304E-5 0.0010115403788763394 0.0 0.02063931426899608 2.1397969553153335E-4 36-37 7.781079837510304E-5 0.001154193509230695 0.0 0.03233687095805324 2.2694816192738386E-4 38-39 7.781079837510304E-5 0.001180130442022396 0.0 0.09253649196759128 2.334323951253091E-4 40-41 7.781079837510304E-5 0.0012968466395850507 0.0 0.15887668181556455 2.334323951253091E-4 42-43 7.781079837510304E-5 0.0013357520387726023 0.0 0.1857214072549751 2.3991662832323436E-4 44-45 8.429503157302828E-5 0.0014719209359290325 0.0 0.22279176844751375 2.464008615211596E-4 46-47 9.077926477095354E-5 0.0015691844338979113 0.0 0.26098390198329346 2.5936932791701013E-4 48-49 9.077926477095354E-5 0.0015756686670958366 0.0 0.29743177678883137 2.723377943128606E-4 50-51 9.077926477095354E-5 0.0018285537618149214 0.0 0.329042413628717 2.723377943128606E-4 52-53 9.077926477095354E-5 0.001893396093794174 0.0 0.5676168056799807 3.0475896030248686E-4 54-55 9.077926477095354E-5 0.0019128487933879495 0.0 0.895077066408404 3.3718012629211313E-4 56-57 9.077926477095354E-5 0.0019582384257734262 0.0 1.269573954754577 3.3718012629211313E-4 58-59 9.077926477095354E-5 0.001977691125367202 0.0 1.673548167218518 3.5014859268796364E-4 60-61 9.72634979688788E-5 0.002023080757752679 0.0 1.7876187976364193 3.5014859268796364E-4 62-63 1.0374773116680404E-4 0.002094407322929857 0.0 1.7929877427243013 3.5014859268796364E-4 64-65 1.0374773116680404E-4 0.0023213554848572405 0.0 1.7972608524017342 3.5014859268796364E-4 66-67 1.0374773116680404E-4 0.002360260884044792 0.0 1.800736401395822 3.5014859268796364E-4 68-69 1.0374773116680404E-4 0.0024445559156178204 0.0 1.804192497690316 3.5014859268796364E-4 70-71 1.0374773116680404E-4 0.0024899455480032967 0.0 1.807518909320852 3.6311705908381416E-4 72-73 1.5562159675020607E-4 0.0025029140143991474 0.0 1.810521109291491 3.760855254796647E-4 74-75 1.5562159675020607E-4 0.0025418194135866995 0.0 1.8130823814046715 3.760855254796647E-4 76-77 1.5562159675020607E-4 0.0026261144451597274 0.0 1.815299989158362 3.8256975867758997E-4 78-79 1.5562159675020607E-4 0.002658535611149354 0.0 1.8169145632246453 3.890539918755152E-4 80-81 1.5562159675020607E-4 0.002658535611149354 0.0 1.8174073649476878 3.9553822507344043E-4 82-83 1.5562159675020607E-4 0.0026715040775452045 0.0 1.8178418085719488 4.0202245827136566E-4 84-85 1.5562159675020607E-4 0.00269095677713898 0.0 1.81808820943347 4.0202245827136566E-4 86-87 1.5562159675020607E-4 0.002742830642722382 0.0 1.8181465675322512 4.0202245827136566E-4 88 1.5562159675020607E-4 0.0029049364726705133 0.0 1.818166020231845 4.0202245827136566E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10510 0.0 56.442364 1 GTATCAA 20055 0.0 40.437283 1 TCAACGC 24715 0.0 32.33115 4 ATCAACG 25085 0.0 31.853441 3 CAACGCA 25415 0.0 31.42552 5 TATCAAC 25700 0.0 31.263062 2 AACGCAG 25990 0.0 30.798252 6 TATCTCG 4385 0.0 29.213589 94 ACGCAGA 29550 0.0 27.043022 7 ATCTCGT 4695 0.0 25.687529 94 CGCAGAG 32535 0.0 24.602789 8 GTACATG 28060 0.0 24.178839 1 TACATGG 28510 0.0 23.580301 2 ACATGGG 28845 0.0 22.693924 3 GCAGAGT 35245 0.0 22.586323 9 GTGGTAT 4715 0.0 22.296011 1 TGGTATC 4515 0.0 21.327044 2 GAGTACT 19820 0.0 21.194212 12-13 CATGGGG 21485 0.0 20.374243 4 CGCTATC 6955 0.0 20.30542 94 >>END_MODULE