##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139229_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9204082 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57565632292281 33.0 33.0 33.0 33.0 33.0 2 32.58688699209764 33.0 33.0 33.0 33.0 33.0 3 32.580250806109724 33.0 33.0 33.0 33.0 33.0 4 36.49570397134663 37.0 37.0 37.0 37.0 37.0 5 36.53093094998502 37.0 37.0 37.0 37.0 37.0 6 36.52735634037159 37.0 37.0 37.0 37.0 37.0 7 36.50908477347333 37.0 37.0 37.0 37.0 37.0 8 36.502850148445006 37.0 37.0 37.0 37.0 37.0 9 36.52144602796889 37.0 37.0 37.0 37.0 37.0 10-11 36.47486626042662 37.0 37.0 37.0 37.0 37.0 12-13 36.457792368646864 37.0 37.0 37.0 37.0 37.0 14-15 38.4478779632776 40.0 37.0 40.0 37.0 40.0 16-17 38.417333906846984 40.0 37.0 40.0 37.0 40.0 18-19 38.448427176115985 40.0 37.0 40.0 37.0 40.0 20-21 38.444941592987334 40.0 37.0 40.0 37.0 40.0 22-23 38.447516120263415 40.0 37.0 40.0 37.0 40.0 24-25 38.423143332160265 40.0 37.0 40.0 37.0 40.0 26-27 38.30637498604107 40.0 37.0 40.0 37.0 40.0 28-29 38.25495156745737 40.0 37.0 40.0 37.0 40.0 30-31 38.177327644064576 40.0 37.0 40.0 37.0 40.0 32-33 38.10168300218605 40.0 37.0 40.0 33.0 40.0 34-35 38.0829087717647 40.0 37.0 40.0 33.0 40.0 36-37 38.0253018605129 40.0 37.0 40.0 33.0 40.0 38-39 37.975448868416926 40.0 37.0 40.0 33.0 40.0 40-41 37.94343308458653 40.0 37.0 40.0 33.0 40.0 42-43 37.88041747765758 40.0 37.0 40.0 33.0 40.0 44-45 37.80597797781978 40.0 37.0 40.0 33.0 40.0 46-47 37.75934394864252 40.0 37.0 40.0 33.0 40.0 48-49 37.73434926942514 40.0 37.0 40.0 33.0 40.0 50-51 37.65781197063126 40.0 37.0 40.0 33.0 40.0 52-53 37.549749026665204 40.0 37.0 40.0 33.0 40.0 54-55 37.36666062696767 40.0 37.0 40.0 33.0 40.0 56-57 37.25367263703912 40.0 37.0 40.0 33.0 40.0 58-59 37.13470761208163 37.0 37.0 40.0 33.0 40.0 60-61 36.998935622751404 37.0 37.0 40.0 33.0 40.0 62-63 36.83594143389318 37.0 37.0 40.0 33.0 40.0 64-65 36.641037341474586 37.0 37.0 40.0 33.0 40.0 66-67 36.430727874252966 37.0 37.0 40.0 33.0 40.0 68-69 36.210684497583784 37.0 37.0 40.0 33.0 40.0 70-71 35.95224720407293 37.0 37.0 38.5 33.0 40.0 72-73 35.75600354852983 37.0 33.0 37.0 33.0 40.0 74-75 35.56121541354469 37.0 33.0 37.0 33.0 40.0 76-77 33.7451771378131 35.0 33.0 37.0 27.0 37.0 78-79 35.03163304458921 37.0 33.0 37.0 33.0 37.0 80-81 35.08669674421779 37.0 33.0 37.0 33.0 37.0 82-83 34.95297827647752 37.0 33.0 37.0 33.0 37.0 84-85 34.80966727383879 37.0 33.0 37.0 33.0 37.0 86-87 34.711472237292256 37.0 33.0 37.0 33.0 37.0 88-89 34.5940971614109 37.0 33.0 37.0 33.0 37.0 90-91 34.53505490452885 37.0 33.0 37.0 33.0 37.0 92-93 34.47579557730015 37.0 33.0 37.0 33.0 37.0 94-95 34.49289201550377 37.0 33.0 37.0 33.0 37.0 96-97 34.471080288597335 37.0 33.0 37.0 33.0 37.0 98-99 34.46801468454473 37.0 33.0 37.0 33.0 37.0 100 34.45058511200006 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 4.0 19 19.0 20 68.0 21 390.0 22 1327.0 23 3893.0 24 8878.0 25 17638.0 26 31529.0 27 49678.0 28 73724.0 29 103809.0 30 141216.0 31 187993.0 32 249948.0 33 335116.0 34 460018.0 35 663892.0 36 1135830.0 37 2635135.0 38 3031611.0 39 72362.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.014423600311254 20.018867715433217 14.256402756950667 23.710305927304866 2 14.650673472922124 21.11623951199044 41.529508320330045 22.703578694757393 3 17.987627663464973 26.352253271972153 30.60162871213012 25.058490352432756 4 12.397952836579492 18.155705889479034 39.18485042571373 30.261490848227744 5 13.318938271084505 37.77599982268737 35.61601254747622 13.289049358751912 6 29.725254034466943 38.118696671666626 18.821062343533825 13.334986950332603 7 26.198799619560102 32.893437933299595 23.29847778409623 17.609284663044072 8 24.36258173275727 36.60240097817468 21.222496713958 17.812520575110042 9 25.61956749190196 16.790517511686662 21.217281636560823 36.37263335985055 10-11 24.030341099695097 26.75448291785222 29.040159175330537 20.175016807122145 12-13 25.029659399437023 24.4400078856329 29.080911450089992 21.449421264840087 14-15 22.20519573181474 25.7067000030476 26.840065608726942 25.248038656410714 16-17 21.612329181769567 28.818626344267685 27.46165777314891 22.107386700813837 18-19 21.63382507891607 27.878070838569236 29.35091734297891 21.137186739535785 20-21 22.40046697823901 27.029929306795903 29.328792120258306 21.24081159470678 22-23 22.135381196799443 26.963988987391456 29.198347837070983 21.702281978738114 24-25 21.94959814369012 27.101836203476775 29.205079855016546 21.743485797816554 26-27 21.853371214806305 27.27760145565054 29.118001107219847 21.751026222323308 28-29 21.80596461435694 27.342573414003713 29.166635623003362 21.684826348635983 30-31 22.15573744171833 27.166222291885383 29.02066655672949 21.657373709666796 32-33 21.898579113993723 27.35331451781846 28.972196142041952 21.775910226145864 34-35 22.02420043478503 27.334469264087414 28.980777287149735 21.660553013977825 36-37 22.01450455097046 27.34536071896167 28.885174356960803 21.754960373107068 38-39 21.84233836322128 27.44269711080619 28.96368542548961 21.751279100482922 40-41 22.138050110737137 27.275301186332758 28.800409858803334 21.786238844126775 42-43 22.012557771047653 27.430727585143373 28.57534214437143 21.981372499437548 44-45 22.100952619066813 27.495012253713597 28.381938441744666 22.022096685474928 46-47 22.158876354969088 27.534664005292885 28.142353559863665 22.16410607987436 48-49 22.072842886308187 27.70899420046312 28.07120187573683 22.146961037491863 50-51 22.11647778525664 27.809587962614447 27.92896466160827 22.144969590520645 52-53 22.29404393638307 27.67416808363892 27.80294183926413 22.22884614071388 54-55 22.264364645227317 27.57672269255893 27.868350826237787 22.290561835975968 56-57 22.258028066954516 27.691205797167417 27.825388631351185 22.225377504526882 58-59 22.181034024836883 27.7840340705573 27.829852753077418 22.205079151528402 60-61 22.2988235344737 27.725268376092426 27.821880222590995 22.154027866842874 62-63 22.233343669025743 27.81751296801837 27.747970779529386 22.201172583426498 64-65 22.223837656756093 27.824314391761725 27.66575785720706 22.286090094275124 66-67 22.292452267078524 27.794483049761926 27.557348471947247 22.355716211212307 68-69 22.25759657826263 27.767599438867556 27.64895898465844 22.325844998211373 70-71 22.243280725396417 27.616936838875905 27.670361555198546 22.46942088052913 72-73 22.352653365561256 27.601733814879832 27.559660470048307 22.485952349510605 74-75 22.211980005932972 27.745809318776928 27.554962530077553 22.48724814521255 76-77 22.354700705333418 27.637584585178253 27.494318453961125 22.513396255527205 78-79 22.349309051614068 27.669556921282084 27.453179441696495 22.527954585407347 80-81 22.34281965876933 27.703730731463473 27.4644165554769 22.489033054290303 82-83 22.386189363933326 27.65780686706044 27.532570259054573 22.423433509951664 84-85 22.478618267488127 27.632821263168932 27.49759227686834 22.390968192474602 86-87 22.327646225495734 27.63084375961157 27.57980817986644 22.46170183502626 88-89 22.397001250132263 27.58488032302268 27.516096922480042 22.502021504365015 90-91 22.430518361783786 27.58953156935366 27.56705555027443 22.412894518588132 92-93 22.474142419019483 27.530637839076967 27.592854839763607 22.402364902139947 94-95 22.356588109520732 27.547060834561847 27.632957396988616 22.4633936589288 96-97 22.416319534681232 27.66431582824986 27.711780955219766 22.20758368184914 98-99 23.548823726522453 29.544847066898537 27.890247974246506 19.0160812323325 100 22.43667389112523 30.562304040751982 21.80540853810315 25.19561353001964 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2242.0 1 1959.5 2 2689.5 3 3967.0 4 5310.0 5 8472.0 6 11331.5 7 13837.0 8 16243.5 9 16832.0 10 15158.0 11 12955.0 12 13319.0 13 17066.5 14 26202.5 15 38700.0 16 48706.0 17 54522.5 18 55772.0 19 52632.5 20 47457.0 21 42234.5 22 39067.5 23 40132.5 24 46179.0 25 57368.0 26 72177.5 27 88422.0 28 106254.0 29 126614.5 30 146111.5 31 164956.0 32 185774.0 33 205546.5 34 223554.0 35 240921.5 36 261454.5 37 281364.5 38 295126.0 39 305938.0 40 318610.5 41 330564.5 42 338380.5 43 346677.0 44 353477.0 45 358933.0 46 361502.5 47 362413.0 48 364708.0 49 362292.0 50 355240.5 51 345983.5 52 333430.5 53 317432.0 54 300228.0 55 280396.0 56 258360.5 57 233449.0 58 206311.5 59 178829.0 60 149404.5 61 120906.0 62 94867.5 63 72127.5 64 53315.0 65 39065.5 66 28958.5 67 21560.0 68 15990.0 69 11158.5 70 7522.5 71 5324.5 72 3707.0 73 2493.5 74 1664.0 75 1085.0 76 731.0 77 481.0 78 328.5 79 231.0 80 161.0 81 112.5 82 86.0 83 61.0 84 43.0 85 31.0 86 22.0 87 16.5 88 10.0 89 6.5 90 5.0 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0013798225613374587 5 0.0 6 1.7383591323936489E-4 7 0.0 8 0.0 9 0.0 10-11 0.00428614173580809 12-13 1.6297116866190455E-5 14-15 0.0013417959553163477 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 133.0 20-21 583.0 22-23 1250.0 24-25 3401.0 26-27 3432.0 28-29 5714.0 30-31 11628.0 32-33 14423.0 34-35 20446.0 36-37 27289.0 38-39 31575.0 40-41 37162.0 42-43 46082.0 44-45 57014.0 46-47 55993.0 48-49 49651.0 50-51 42016.0 52-53 40454.0 54-55 43756.0 56-57 49238.0 58-59 50169.0 60-61 51570.0 62-63 52765.0 64-65 57380.0 66-67 62601.0 68-69 64962.0 70-71 64622.0 72-73 64347.0 74-75 67156.0 76-77 66096.0 78-79 72244.0 80-81 76102.0 82-83 75318.0 84-85 77687.0 86-87 82689.0 88-89 89538.0 90-91 94947.0 92-93 100663.0 94-95 116675.0 96-97 320744.0 98-99 590999.0 100-101 6363568.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.4475618611973 #Duplication Level Percentage of deduplicated Percentage of total 1 89.23271145473993 75.35484920616521 2 7.610805445813817 12.854279273977994 3 1.780650108854469 4.511146806619066 4 0.6386730664703254 2.1573753315933355 5 0.27661630507898777 1.1679786267486825 6 0.15845149413034945 0.8028505411543096 7 0.08618063526951464 0.5094421169711735 8 0.050579502919773894 0.3417052561380972 9 0.03792809520669516 0.2882641649620294 >10 0.12327821251387854 1.679679268910104 >50 0.0032890698213122543 0.18769398145696203 >100 7.49057511369762E-4 0.09375732874856808 >500 8.755166959901304E-5 0.05097809655445845 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.2594233732380916E-5 2 0.0 1.0864744577460305E-5 0.0 0.0 3.2594233732380916E-5 3 0.0 1.0864744577460305E-5 0.0 0.0 3.2594233732380916E-5 4 0.0 9.778270119714274E-5 0.0 1.0864744577460305E-5 3.2594233732380916E-5 5 0.0 9.778270119714274E-5 0.0 1.0864744577460305E-5 3.2594233732380916E-5 6 3.2594233732380916E-5 9.778270119714274E-5 0.0 1.0864744577460305E-5 3.2594233732380916E-5 7 3.2594233732380916E-5 9.778270119714274E-5 0.0 1.0864744577460305E-5 3.2594233732380916E-5 8 3.2594233732380916E-5 1.0864744577460305E-4 0.0 1.0864744577460305E-5 3.2594233732380916E-5 9 3.2594233732380916E-5 2.064301469717458E-4 0.0 1.0864744577460305E-5 4.345897830984122E-5 10-11 3.2594233732380916E-5 2.064301469717458E-4 0.0 1.0864744577460305E-5 4.345897830984122E-5 12-13 3.2594233732380916E-5 2.064301469717458E-4 0.0 2.172948915492061E-5 4.889135059857138E-5 14-15 3.2594233732380916E-5 2.770509867252378E-4 0.0 3.2594233732380916E-5 7.605321204222213E-5 16-17 6.518846746476183E-5 2.8248335901396795E-4 0.0 4.345897830984122E-5 8.691795661968244E-5 18-19 6.518846746476183E-5 2.933481035914282E-4 0.0 5.432372288730153E-5 8.691795661968244E-5 20-21 6.518846746476183E-5 3.1507759274634884E-4 0.0 9.778270119714274E-5 9.778270119714274E-5 22-23 6.518846746476183E-5 3.4767182647872977E-4 0.0 2.987804758801584E-4 1.1951219035206335E-4 24-25 6.518846746476183E-5 3.965631770773011E-4 0.0 7.713968649996816E-4 1.4124167950698398E-4 26-27 6.518846746476183E-5 4.237250385209519E-4 0.0 0.001673170664928887 1.4124167950698398E-4 28-29 6.518846746476183E-5 4.2915741080968206E-4 0.0 0.005970177145314438 1.4124167950698398E-4 30-31 6.518846746476183E-5 5.052106228519042E-4 0.0 0.009425165920946815 1.4124167950698398E-4 32-33 6.518846746476183E-5 5.106429951406343E-4 0.0 0.016193901792704586 1.5210642408444426E-4 34-35 6.518846746476183E-5 5.758314626053962E-4 0.0 0.025016074389602353 1.6297116866190457E-4 36-37 6.518846746476183E-5 6.464523023588882E-4 0.0 0.03722261492237901 1.6297116866190457E-4 38-39 6.518846746476183E-5 6.736141638025389E-4 0.0 0.06182582901803787 1.6297116866190457E-4 40-41 7.062083975349197E-5 7.822616095771419E-4 0.0 0.08908004079059703 1.847006578168252E-4 42-43 7.605321204222213E-5 7.876939818658721E-4 0.0 0.11198835473217209 1.9013303010555535E-4 44-45 7.605321204222213E-5 8.583148216193641E-4 0.0 0.1422738302418427 1.9556540239428548E-4 46-47 7.605321204222213E-5 9.343680336615862E-4 0.0 0.1710110796492252 1.9556540239428548E-4 48-49 7.605321204222213E-5 9.343680336615862E-4 0.0 0.1966464444797428 2.064301469717458E-4 50-51 7.605321204222213E-5 0.0010104212457038085 0.0 0.21663757450226975 2.172948915492061E-4 52-53 7.605321204222213E-5 0.0010267183625699988 0.0 0.25902637547123114 2.390243807041267E-4 54-55 7.605321204222213E-5 0.0010375831071474592 0.0 0.3023278149846992 2.661862421477775E-4 56-57 7.605321204222213E-5 0.0010430154794361893 0.0 0.3451457733644703 2.770509867252378E-4 58-59 7.605321204222213E-5 0.0010430154794361893 0.0 0.3720903399165718 2.8248335901396795E-4 60-61 7.605321204222213E-5 0.0010538802240136495 0.0 0.3911525342777259 2.8248335901396795E-4 62-63 7.605321204222213E-5 0.00106474496859111 0.0 0.4074931101222262 2.933481035914282E-4 64-65 7.605321204222213E-5 0.0011625276697882526 0.0 0.4138598504446179 2.933481035914282E-4 66-67 7.605321204222213E-5 0.0011733924143657128 0.0 0.4197050830272916 2.9878047588015837E-4 68-69 7.605321204222213E-5 0.001205986648098094 0.0 0.4257784752460919 3.042128481688885E-4 70-71 7.605321204222213E-5 0.0012331485095417446 0.0 0.4307219340288363 3.042128481688885E-4 72-73 7.605321204222213E-5 0.0012494456264079351 0.0 0.434231246527356 3.2594233732380915E-4 74-75 7.605321204222213E-5 0.0012494456264079351 0.0 0.43682792048136904 3.2594233732380915E-4 76-77 8.148558433095229E-5 0.001282039860140316 0.0 0.43952780950886794 3.2594233732380915E-4 78-79 8.691795661968244E-5 0.0013037693492952366 0.0 0.44135851897017 3.2594233732380915E-4 80-81 8.691795661968244E-5 0.0013037693492952366 0.0 0.4418637295930219 3.2594233732380915E-4 82-83 8.691795661968244E-5 0.0013037693492952366 0.0 0.4423146164929865 3.3680708190126946E-4 84-85 8.691795661968244E-5 0.0013146340938726968 0.0 0.4424232639387611 3.3680708190126946E-4 86-87 8.691795661968244E-5 0.0013254988384501572 0.0 0.4424938847785146 3.3680708190126946E-4 88 8.691795661968244E-5 0.0014015520504923793 0.0 0.4424993171508033 3.3680708190126946E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12305 0.0 52.139385 1 GTATCAA 22815 0.0 39.395863 1 TCAACGC 27535 0.0 31.993248 4 ATCAACG 28040 0.0 31.416197 3 CAACGCA 28205 0.0 31.23462 5 AACGCAG 28760 0.0 30.631865 6 TATCAAC 29085 0.0 30.527695 2 ACGCAGA 33115 0.0 26.603422 7 CGCAGAG 33735 0.0 26.140387 8 GCAGAGT 39295 0.0 22.208622 9 GTACATG 26190 0.0 21.528633 1 GAGTACT 24515 0.0 21.004044 12-13 TACATGG 26435 0.0 20.618685 2 CAGAGTA 37950 0.0 19.801609 10-11 AGAGTAC 35225 0.0 19.740114 10-11 ACATGGG 27020 0.0 19.509567 3 GTGGTAT 6030 0.0 19.410788 1 GTACTTT 27340 0.0 18.890202 14-15 TGGTATC 5775 0.0 18.830988 2 AGTACTT 26600 0.0 18.405388 12-13 >>END_MODULE