##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139228_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7958286 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.552936649926885 33.0 33.0 33.0 33.0 33.0 2 32.573398719271964 33.0 33.0 33.0 33.0 33.0 3 32.565201351145205 33.0 33.0 33.0 33.0 33.0 4 36.47868825020865 37.0 37.0 37.0 37.0 37.0 5 36.51640240122057 37.0 37.0 37.0 37.0 37.0 6 36.50846941162959 37.0 37.0 37.0 37.0 37.0 7 36.49125552914283 37.0 37.0 37.0 37.0 37.0 8 36.485634972153555 37.0 37.0 37.0 37.0 37.0 9 36.50803552423223 37.0 37.0 37.0 37.0 37.0 10-11 36.46130969658542 37.0 37.0 37.0 37.0 37.0 12-13 36.44391637847647 37.0 37.0 37.0 37.0 37.0 14-15 38.412931503089986 40.0 37.0 40.0 37.0 40.0 16-17 38.38196717232832 40.0 37.0 40.0 37.0 40.0 18-19 38.41416493450977 40.0 37.0 40.0 37.0 40.0 20-21 38.41176220180468 40.0 37.0 40.0 37.0 40.0 22-23 38.41191672640647 40.0 37.0 40.0 37.0 40.0 24-25 38.3865683637313 40.0 37.0 40.0 37.0 40.0 26-27 38.266281367751716 40.0 37.0 40.0 37.0 40.0 28-29 38.208572892704204 40.0 37.0 40.0 37.0 40.0 30-31 38.12792873826446 40.0 37.0 40.0 37.0 40.0 32-33 38.05303801198845 40.0 37.0 40.0 33.0 40.0 34-35 38.03055723941099 40.0 37.0 40.0 33.0 40.0 36-37 37.97327468785717 40.0 37.0 40.0 33.0 40.0 38-39 37.91787918165093 40.0 37.0 40.0 33.0 40.0 40-41 37.90475666290946 40.0 37.0 40.0 33.0 40.0 42-43 37.85162078938485 40.0 37.0 40.0 33.0 40.0 44-45 37.78348677580539 40.0 37.0 40.0 33.0 40.0 46-47 37.74391743782194 40.0 37.0 40.0 33.0 40.0 48-49 37.73652997506567 40.0 37.0 40.0 33.0 40.0 50-51 37.65494806907044 40.0 37.0 40.0 33.0 40.0 52-53 37.564849702865914 40.0 37.0 40.0 33.0 40.0 54-55 37.39240442491802 40.0 37.0 40.0 33.0 40.0 56-57 37.28212104267656 40.0 37.0 40.0 33.0 40.0 58-59 37.1780272139078 37.0 37.0 40.0 33.0 40.0 60-61 37.046056387016094 37.0 37.0 40.0 33.0 40.0 62-63 36.89934549230392 37.0 37.0 40.0 33.0 40.0 64-65 36.72487292749067 37.0 37.0 40.0 33.0 40.0 66-67 36.52874596683951 37.0 37.0 40.0 33.0 40.0 68-69 36.31943507637896 37.0 37.0 40.0 33.0 40.0 70-71 36.06558796834511 37.0 37.0 38.5 33.0 40.0 72-73 35.869993872082496 37.0 37.0 37.0 33.0 40.0 74-75 35.67236072617146 37.0 33.0 37.0 33.0 40.0 76-77 33.86552035946444 35.0 33.0 37.0 27.0 37.0 78-79 35.14206670079028 37.0 33.0 37.0 33.0 37.0 80-81 35.18735445435923 37.0 33.0 37.0 33.0 37.0 82-83 35.04586771540514 37.0 33.0 37.0 33.0 37.0 84-85 34.89808071856556 37.0 33.0 37.0 33.0 37.0 86-87 34.78994617494614 37.0 33.0 37.0 33.0 37.0 88-89 34.665986371513256 37.0 33.0 37.0 33.0 37.0 90-91 34.603013303839994 37.0 33.0 37.0 33.0 37.0 92-93 34.536639423959 37.0 33.0 37.0 33.0 37.0 94-95 34.54790317616847 37.0 33.0 37.0 33.0 37.0 96-97 34.52604094023263 37.0 33.0 37.0 33.0 37.0 98-99 34.51829187236696 37.0 33.0 37.0 33.0 37.0 100 34.49886973274132 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 1.0 16 1.0 17 0.0 18 3.0 19 13.0 20 70.0 21 305.0 22 1245.0 23 3376.0 24 7690.0 25 15079.0 26 26749.0 27 42493.0 28 63072.0 29 88502.0 30 120782.0 31 161253.0 32 215030.0 33 289024.0 34 396450.0 35 567907.0 36 964886.0 37 2225472.0 38 2696256.0 39 72625.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.16429090384538 20.65653332891027 14.412060586915324 23.767115180329032 2 14.190228901047286 21.341127976551736 42.2333150630676 22.23532805933338 3 17.478562595011034 26.98628825352595 31.300332760094324 24.234816391368692 4 11.918827362824176 18.74207970924075 39.471543750036915 29.867549177898166 5 12.772398478767915 38.07907883682491 36.16227162481972 12.986251059587453 6 28.722486035607957 38.77547866202697 19.159046612727856 13.342988689637217 7 25.28068229767063 33.29410378063819 23.71048238276433 17.714731538926852 8 23.803944718749744 37.047638147209085 21.715894603435967 17.43252253060521 9 24.983809327787416 16.891275332401978 21.570172270762825 36.55474306904779 10-11 23.414798607911578 27.047973217798027 29.503844038647287 20.03338413564311 12-13 24.55136045694284 24.703993902201503 29.48655249964754 21.258093141208114 14-15 21.760318676398725 26.08755257335012 27.061872413584688 25.09025633666647 16-17 21.20573450112248 29.347242609778036 27.68747567001236 21.759547219087125 18-19 21.202687362580335 28.149905645512113 29.710461524001524 20.93694546790603 20-21 21.924159666531835 27.314505380142222 29.62724839631161 21.134086557014328 22-23 21.62655025455985 27.503057702850665 29.444542711231264 21.425849331358222 24-25 21.46646916502597 27.741160143441547 29.61353125479804 21.178839436734435 26-27 21.585344286088905 27.814706726848605 29.55022797074445 21.049721016318042 28-29 21.34192157572259 27.60935521121168 29.731864552557763 21.316858660507968 30-31 21.673839300296454 27.632345624720777 29.495355513186205 21.19845956179656 32-33 21.5430974301487 27.559196714751177 29.535067354922763 21.36263850017737 34-35 21.34112920273775 27.87965305933865 29.74363631990744 21.035581418016154 36-37 21.64712304842322 27.735867230639773 29.2926556337289 21.324354087208107 38-39 21.357637379227825 27.699086650443643 29.4926534038454 21.450622566483133 40-41 21.50328393503375 27.586383863853026 29.424647542376682 21.485684658736545 42-43 21.625670268599944 27.616181237178022 29.278077017863723 21.480071476358308 44-45 21.52596627155704 27.868590546248058 29.023770210938405 21.581672971256502 46-47 21.881914939752388 27.71628755373267 28.516748297835708 21.88504920867923 48-49 21.722513921256432 27.84648852503096 28.507620239243053 21.92337731446955 50-51 21.622239052928936 28.063736232190763 28.508345052334118 21.805679662546183 52-53 21.770115501872784 28.090980056666776 28.53478062091482 21.604123820545624 54-55 21.695599073392234 28.04416731980876 28.335845834864514 21.92438777193449 56-57 21.908604737673755 28.231136502476 28.032694795111478 21.827563964738765 58-59 21.620716096844905 28.422587690599826 28.410409898693022 21.546286313862247 60-61 21.93972761164287 28.53605075487686 27.99602474197484 21.528196891505424 62-63 21.733970705749577 28.70062241035935 28.008802396618908 21.556604487272164 64-65 21.76363988896288 28.518777257140588 27.98761799425616 21.729964859640372 66-67 21.830554989893773 28.319688904743284 27.991025922605473 21.85873018275747 68-69 21.846491094350608 28.215512109706857 28.048685470809552 21.889311325132983 70-71 21.83316841965149 28.069900719564522 28.103944835591925 21.992986025192067 72-73 21.93593693098098 28.03760614753717 28.064528640451503 21.961928281030353 74-75 21.809445726528175 28.18071714686213 28.041319037054357 21.968518089555335 76-77 21.917421143487665 28.077791131701808 27.993565954115994 22.01122177069453 78-79 21.899386819877435 28.041457368092242 27.9837460322046 22.075409779825726 80-81 21.932588669846538 28.10874143728514 27.97775959450543 21.98091029836289 82-83 21.93182755848341 28.048479353085114 28.04903916439956 21.970653924031918 84-85 22.01273420384668 28.017377746950906 27.981621257163493 21.988266792038925 86-87 21.939567448730806 28.010913570453027 28.086998561665986 21.962520419150174 88-89 21.984454083864215 27.92166947730772 28.016213892985682 22.07766254584238 90-91 22.00556532651358 27.969297354130155 28.039129907186698 21.986007412169567 92-93 22.001187862484954 27.8705536049877 28.117804921489387 22.01045361103797 94-95 21.91496792263142 27.898050236510358 28.151850008644708 22.035131832213516 96-97 21.988602124532676 28.02880878754322 28.17227737907737 21.810311708846733 98-99 23.079121414902968 29.910932634199185 28.431772185392575 18.57817376550527 100 22.01099046291387 30.911089244007115 22.354838140989493 24.72308215208952 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2395.0 1 2023.0 2 2626.0 3 3829.0 4 5161.5 5 8276.5 6 11111.0 7 13620.0 8 15724.5 9 15703.0 10 13625.5 11 11561.5 12 12277.5 13 16305.5 14 25275.0 15 37334.0 16 47448.5 17 53272.5 18 54191.0 19 51347.5 20 46900.0 21 42833.0 22 41229.0 23 43964.0 24 50927.0 25 62404.0 26 76820.5 27 92122.0 28 110423.0 29 130434.0 30 148620.5 31 166130.0 32 183744.0 33 199977.0 34 216112.0 35 231146.0 36 245791.5 37 261411.0 38 273930.0 39 282815.5 40 291047.0 41 298440.0 42 302959.5 43 307101.5 44 310755.0 45 315003.5 46 325572.5 47 336523.5 48 336314.5 49 329271.5 50 322597.5 51 309872.5 52 289802.5 53 267384.0 54 245938.5 55 224190.0 56 201922.0 57 179482.0 58 156967.5 59 133784.5 60 109807.5 61 88600.5 62 69544.5 63 53030.5 64 39447.5 65 28836.5 66 21234.5 67 15773.0 68 11721.5 69 8406.5 70 5859.0 71 4198.0 72 2975.5 73 2033.5 74 1402.0 75 983.0 76 683.5 77 440.0 78 280.5 79 184.5 80 126.5 81 81.0 82 63.5 83 52.0 84 41.0 85 29.0 86 20.5 87 14.5 88 9.0 89 6.0 90 3.0 91 1.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0010932002192431888 5 0.0 6 1.1308967785274366E-4 7 0.0 8 0.0 9 0.0 10-11 0.00395185596496532 12-13 5.0262079045663855E-5 14-15 0.0014952968516084996 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 141.0 20-21 538.0 22-23 1232.0 24-25 2651.0 26-27 4152.0 28-29 7524.0 30-31 16008.0 32-33 19901.0 34-35 27871.0 36-37 38035.0 38-39 44640.0 40-41 46486.0 42-43 56034.0 44-45 66991.0 46-47 65236.0 48-49 58116.0 50-51 51448.0 52-53 50727.0 54-55 58376.0 56-57 63699.0 58-59 61604.0 60-61 63351.0 62-63 63658.0 64-65 68190.0 66-67 69660.0 68-69 59206.0 70-71 58988.0 72-73 56778.0 74-75 58599.0 76-77 57056.0 78-79 62530.0 80-81 63181.0 82-83 62390.0 84-85 63444.0 86-87 67026.0 88-89 72447.0 90-91 77509.0 92-93 81031.0 94-95 93177.0 96-97 259594.0 98-99 483760.0 100-101 5275301.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.10684256582746 #Duplication Level Percentage of deduplicated Percentage of total 1 88.7641058651768 74.65668677498869 2 7.780521523406159 13.087901976983076 3 2.0020232863394467 5.05151572071817 4 0.6940738006621882 2.335054235254407 5 0.3021357562385096 1.2705842241729774 6 0.16102859940258432 0.8126164235129315 7 0.09355903574763871 0.5508268563166091 8 0.05576847169579413 0.375240805524397 9 0.03101394664644489 0.2347636615143762 >10 0.11331807075009755 1.4435151734280602 >50 0.0021191574443397763 0.12036712946651286 >100 3.080771791582707E-4 0.046740856779311786 >500 2.440931083752482E-5 0.01418616134052664 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.0262079045663855E-5 0.0 0.0 0.0 3 0.0 5.0262079045663855E-5 0.0 0.0 0.0 4 0.0 7.539311856849578E-5 0.0 1.2565519761415964E-5 0.0 5 0.0 7.539311856849578E-5 0.0 1.2565519761415964E-5 0.0 6 0.0 7.539311856849578E-5 0.0 1.2565519761415964E-5 0.0 7 0.0 7.539311856849578E-5 0.0 1.2565519761415964E-5 0.0 8 0.0 8.795863832991174E-5 0.0 1.2565519761415964E-5 0.0 9 0.0 1.7591727665982349E-4 0.0 5.0262079045663855E-5 0.0 10-11 0.0 1.7591727665982349E-4 0.0 6.282759880707982E-5 0.0 12-13 0.0 1.7591727665982349E-4 0.0 8.795863832991174E-5 6.282759880707982E-6 14-15 0.0 2.387448754669033E-4 0.0 8.795863832991174E-5 1.2565519761415964E-5 16-17 0.0 2.513103952283193E-4 0.0 9.424139821061973E-5 1.2565519761415964E-5 18-19 0.0 2.6387591498973524E-4 0.0 1.0052415809132771E-4 1.2565519761415964E-5 20-21 0.0 2.764414347511512E-4 0.0 1.0680691797203569E-4 1.8848279642123944E-5 22-23 0.0 2.8900695451256715E-4 0.0 1.2565519761415964E-4 2.5131039522831927E-5 24-25 0.0 3.32986273677523E-4 0.0 1.5706899701769953E-4 2.5131039522831927E-5 26-27 0.0 3.644000730810629E-4 0.0 2.1989659582477935E-4 2.5131039522831927E-5 28-29 0.0 3.644000730810629E-4 0.0 5.277518299794705E-4 2.5131039522831927E-5 30-31 0.0 4.2722767188814275E-4 0.0 0.0012879657755451362 2.5131039522831927E-5 32-33 0.0 4.2722767188814275E-4 0.0 0.003053421302024079 3.769655928424789E-5 34-35 0.0 4.7120699105309864E-4 0.0 0.0051895596614647925 3.769655928424789E-5 36-37 0.0 5.214690700987625E-4 0.0 0.007457635978400374 3.769655928424789E-5 38-39 0.0 5.340345898601785E-4 0.0 0.011334098824797198 3.769655928424789E-5 40-41 0.0 6.408415078322142E-4 0.0 0.015568678984394378 3.769655928424789E-5 42-43 0.0 6.78538067116462E-4 0.0 0.018911107240931025 3.769655928424789E-5 44-45 0.0 7.853449850884976E-4 0.0 0.023051446002317583 3.769655928424789E-5 46-47 0.0 8.293243042534536E-4 0.0 0.027505922757739543 4.397931916495587E-5 48-49 0.0 8.293243042534536E-4 0.0 0.031790764996382385 5.0262079045663855E-5 50-51 0.0 9.486967419869053E-4 0.0 0.035598117484091425 5.0262079045663855E-5 52-53 0.0 9.549795018676132E-4 0.0 0.03969447692631303 7.539311856849578E-5 54-55 0.0 9.549795018676132E-4 0.0 0.04387251224698384 1.0052415809132771E-4 56-57 0.0 9.549795018676132E-4 0.0 0.04818248552514951 1.0052415809132771E-4 58-59 0.0 9.675450216290291E-4 0.0 0.05236680360570103 1.0052415809132771E-4 60-61 0.0 9.863933012711531E-4 0.0 0.05703489419706706 1.0052415809132771E-4 62-63 0.0 9.926760611518612E-4 0.0 0.06148308819260831 1.0052415809132771E-4 64-65 6.282759880707982E-6 0.0010806346994817729 0.0 0.06522761308151026 1.0052415809132771E-4 66-67 1.2565519761415964E-5 0.0011183312587660207 0.0 0.06969465535669364 1.0680691797203569E-4 68-69 1.2565519761415964E-5 0.0011434622982888526 0.0 0.07413656659235418 1.1308967785274366E-4 70-71 1.2565519761415964E-5 0.0011685933378116845 0.0 0.07787480872137542 1.2565519761415964E-4 72-73 1.2565519761415964E-5 0.0011811588575731005 0.0 0.08114184385934359 1.6335175689840753E-4 74-75 1.2565519761415964E-5 0.0012062898970959324 0.0 0.08385599612780943 1.6335175689840753E-4 76-77 1.2565519761415964E-5 0.0012628347360223043 0.0 0.08645705871842253 1.6335175689840753E-4 78-79 1.2565519761415964E-5 0.0012816830156644283 0.0 0.08815340388621369 1.6335175689840753E-4 80-81 1.2565519761415964E-5 0.0012816830156644283 0.0 0.08878796263416519 1.7591727665982349E-4 82-83 1.2565519761415964E-5 0.0012816830156644283 0.0 0.08927801790486042 1.8848279642123944E-4 84-85 1.2565519761415964E-5 0.0012816830156644283 0.0 0.0894979145006852 1.8848279642123944E-4 86-87 1.2565519761415964E-5 0.0012942485354258443 0.0 0.08959843865877652 1.9476555630194744E-4 88 1.2565519761415964E-5 0.0013445106144715081 0.0 0.08960472141865723 2.0104831618265542E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11720 0.0 46.48881 1 CTTATAC 7440 0.0 41.412186 1 GTATCAA 21170 0.0 35.930645 1 TATACAC 10990 0.0 31.379189 3 TTATACA 11265 0.0 28.75437 2 TCAACGC 25945 0.0 28.70898 4 ATCAACG 26195 0.0 28.418139 3 CAACGCA 26415 0.0 28.150867 5 AACGCAG 26900 0.0 27.754524 6 TATCAAC 27120 0.0 27.637947 2 ACGCAGA 30775 0.0 24.245956 7 ACACATC 13285 0.0 24.09425 6 CGCAGAG 31280 0.0 23.854517 8 ACATCTC 13740 0.0 23.358574 8 TACACAT 14705 0.0 23.104427 5 CACATCT 14800 0.0 21.13696 7 GTACATG 22340 0.0 20.926664 1 GCAGAGT 35650 0.0 20.798681 9 TACATGG 22325 0.0 20.366482 2 ACATGGG 22055 0.0 19.976412 3 >>END_MODULE