##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139226_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9108104 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.522394562029596 33.0 33.0 33.0 33.0 33.0 2 32.542124464103615 33.0 33.0 33.0 33.0 33.0 3 32.53702581788701 33.0 33.0 33.0 33.0 33.0 4 36.44157367987893 37.0 37.0 37.0 37.0 37.0 5 36.475762683430055 37.0 37.0 37.0 37.0 37.0 6 36.477965886204196 37.0 37.0 37.0 37.0 37.0 7 36.457375102436245 37.0 37.0 37.0 37.0 37.0 8 36.450813583156275 37.0 37.0 37.0 37.0 37.0 9 36.475900802186715 37.0 37.0 37.0 37.0 37.0 10-11 36.426688144975074 37.0 37.0 37.0 37.0 37.0 12-13 36.407024228094016 37.0 37.0 37.0 37.0 37.0 14-15 38.34938286826764 40.0 37.0 40.0 37.0 40.0 16-17 38.31388019943558 40.0 37.0 40.0 37.0 40.0 18-19 38.34457961832672 40.0 37.0 40.0 37.0 40.0 20-21 38.34113431307652 40.0 37.0 40.0 37.0 40.0 22-23 38.34174869252506 40.0 37.0 40.0 37.0 40.0 24-25 38.31515287081983 40.0 37.0 40.0 37.0 40.0 26-27 38.18392025381115 40.0 37.0 40.0 37.0 40.0 28-29 38.124306018019354 40.0 37.0 40.0 33.0 40.0 30-31 38.03649609439785 40.0 37.0 40.0 33.0 40.0 32-33 37.960116320763305 40.0 37.0 40.0 33.0 40.0 34-35 37.94052344428263 40.0 37.0 40.0 33.0 40.0 36-37 37.87432151466045 40.0 37.0 40.0 33.0 40.0 38-39 37.821148191381525 40.0 37.0 40.0 33.0 40.0 40-41 37.79426557781537 40.0 37.0 40.0 33.0 40.0 42-43 37.73755240411935 40.0 37.0 40.0 33.0 40.0 44-45 37.66625193240536 40.0 37.0 40.0 33.0 40.0 46-47 37.62155268456481 40.0 37.0 40.0 33.0 40.0 48-49 37.61329076481559 40.0 37.0 40.0 33.0 40.0 50-51 37.51448558680665 40.0 37.0 40.0 33.0 40.0 52-53 37.41192856273518 40.0 37.0 40.0 33.0 40.0 54-55 37.23664121237803 40.0 37.0 40.0 33.0 40.0 56-57 37.119870556000194 38.5 37.0 40.0 33.0 40.0 58-59 37.00917736090646 37.0 37.0 40.0 33.0 40.0 60-61 36.87273682889583 37.0 37.0 40.0 33.0 40.0 62-63 36.715847274342515 37.0 37.0 40.0 33.0 40.0 64-65 36.53600238558212 37.0 37.0 40.0 33.0 40.0 66-67 36.333410689748845 37.0 37.0 40.0 33.0 40.0 68-69 36.120208806691366 37.0 37.0 40.0 33.0 40.0 70-71 35.86691625631474 37.0 35.0 37.0 33.0 40.0 72-73 35.67500594648649 37.0 33.0 37.0 33.0 40.0 74-75 35.4790981785533 37.0 33.0 37.0 33.0 40.0 76-77 33.660835401534094 35.0 33.0 37.0 27.0 37.0 78-79 34.96089479363998 37.0 33.0 37.0 33.0 37.0 80-81 35.021614950605255 37.0 33.0 37.0 33.0 37.0 82-83 34.8907632932665 37.0 33.0 37.0 33.0 37.0 84-85 34.754963685030916 37.0 33.0 37.0 33.0 37.0 86-87 34.659060311668775 37.0 33.0 37.0 33.0 37.0 88-89 34.545380631046285 37.0 33.0 37.0 33.0 37.0 90-91 34.48945791774858 37.0 33.0 37.0 33.0 37.0 92-93 34.43427672185756 37.0 33.0 37.0 33.0 37.0 94-95 34.45542644304322 37.0 33.0 37.0 33.0 37.0 96-97 34.44292785877805 37.0 33.0 37.0 33.0 37.0 98-99 34.44439984607048 37.0 33.0 37.0 33.0 37.0 100 34.432079166267634 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 8.0 19 17.0 20 107.0 21 483.0 22 1738.0 23 4953.0 24 10778.0 25 21292.0 26 35670.0 27 56187.0 28 81445.0 29 112435.0 30 150976.0 31 198280.0 32 261258.0 33 345042.0 34 466379.0 35 663056.0 36 1118464.0 37 2561211.0 38 2936832.0 39 81491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.08636660275289 20.360285741137783 14.354282735462837 24.199064920646492 2 14.523670348955173 21.016909776172955 41.76889064946997 22.690529225401907 3 17.968602466550667 26.325017808316638 30.64523637411255 25.06114335102015 4 12.448833319535906 18.338658701195808 38.29158348867334 30.92092449059495 5 13.412110797153831 37.50237151442276 35.47766911752435 13.607848570899058 6 29.765989433792562 37.68945925343538 18.761303820679036 13.78324749209302 7 26.027524499061492 32.642435791247 23.088757001457164 18.241282708234337 8 24.196671447756852 36.537110248192164 21.433198391234885 17.833019912816102 9 25.29310161587966 16.797842888047832 21.112198543187475 36.79685695288504 10-11 24.055608999142432 26.648229589916134 28.83606784980392 20.460093561137516 12-13 25.011267439553546 24.244104398028878 28.84508442647168 21.89954373594589 14-15 22.197330144922287 25.660296981165427 26.416523523040496 25.725849350871787 16-17 21.812838325078413 28.791612392656035 27.1249482878105 22.270600994455048 18-19 21.906299049725387 27.641878046188317 28.945749850902008 21.506073053184284 20-21 22.459063326642195 26.955519255848063 28.899964234022036 21.685453183487702 22-23 22.244828221188314 27.176950014016732 28.68309261485677 21.89512914993818 24-25 22.31896680490634 27.190454433627387 28.78966519347696 21.700913567989318 26-27 22.168049162825078 27.47017623564228 28.797520873407596 21.564253728125053 28-29 22.089288610668305 27.3010419934135 28.822504406290093 21.787164989628106 30-31 22.124521495119943 27.318607289816377 28.887799527463187 21.669071687600493 32-33 22.145929835005447 27.4403150511828 28.720916557463898 21.69283855634786 34-35 22.371821836561814 27.26268594469535 28.796983666339443 21.568508552403394 36-37 21.99316401589259 27.49336489286182 28.574077986934416 21.93939310431118 38-39 21.919632194388548 27.234767441113362 28.783409414766588 22.0621909497315 40-41 22.137914445804363 27.07054614226669 28.78881746140648 22.00272195052247 42-43 22.167577848518143 27.147685940693624 28.60506942274133 22.079666788046904 44-45 22.066233534592573 27.390504591296605 28.367065910014993 22.17619596409583 46-47 22.394600093588735 27.224140411203052 27.90963815389024 22.471621341317974 48-49 22.21484676158995 27.37034021534099 27.95956187324075 22.45525114982831 50-51 22.142073835409875 27.61550572650946 27.896479212037544 22.345941226043124 52-53 22.28893631680253 27.607871214856033 27.90865662157765 22.19453584676378 54-55 22.205098971622796 27.547935332805178 27.729335387648163 22.51763030792386 56-57 22.40720408867751 27.71492765227064 27.486150132325864 22.39171812672599 58-59 22.15278765848853 27.891532683221033 27.78031308501324 22.175366573277195 60-61 22.40416615767545 28.009004537659226 27.43139662836897 22.155432676296353 62-63 22.242516442845485 28.12473497534628 27.40757556786334 22.225173013944893 64-65 22.25593696839333 28.018117146075554 27.38356797341266 22.342377912118458 66-67 22.36886098579827 27.85406153810946 27.29335075117918 22.48372672491309 68-69 22.33452440986816 27.776896385236583 27.408670560226163 22.4799086446691 70-71 22.362773648409163 27.5999449583836 27.42040536418401 22.616876029023224 72-73 22.450373316075314 27.560581330006073 27.369297601563947 22.619747752354666 74-75 22.34498917621761 27.697107488080242 27.344655397431804 22.61324793827034 76-77 22.51776132344418 27.59544191789211 27.274661431942587 22.612135326721123 78-79 22.46488638105987 27.612407297771774 27.24916468872346 22.6735416324449 80-81 22.447184119173606 27.629523777425767 27.263637895588282 22.65965420781234 82-83 22.50116365662716 27.595107593010255 27.349552366115436 22.554176384247153 84-85 22.61584644290168 27.531464410692518 27.297381787931062 22.555307358474735 86-87 22.473518291935925 27.530669833939765 27.408712444671096 22.587099429453215 88-89 22.50712399447125 27.506174410736023 27.381966600614394 22.604734994178333 90-91 22.576711906568118 27.494155288415723 27.38385626352688 22.545276541489283 92-93 22.632788747670478 27.417037052342646 27.46529322184244 22.484880978144435 94-95 22.514159881386153 27.436061930748924 27.491912424541475 22.55786576332345 96-97 22.593305049139513 27.52829765306597 27.54241295669186 22.33598434110266 98-99 23.645149305016012 29.47913212750624 27.732220412761066 19.143498154716678 100 22.544686221662815 30.4520268698781 21.607164844786777 25.396122063672312 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1852.0 1 1734.0 2 2670.0 3 3965.0 4 5484.0 5 8922.5 6 11822.0 7 13919.5 8 15291.5 9 15028.5 10 13620.5 11 12262.0 12 13289.0 13 17294.5 14 26541.5 15 39278.5 16 49674.0 17 55892.0 18 57149.0 19 53757.0 20 48404.5 21 43433.5 22 40857.5 23 42424.0 24 48421.5 25 59153.5 26 73710.0 27 89656.5 28 106506.0 29 125573.0 30 144686.0 31 163282.5 32 183928.5 33 203991.0 34 222734.0 35 241244.5 36 261446.0 37 280780.0 38 295868.5 39 308393.0 40 322024.0 41 335036.5 42 343962.5 43 352388.0 44 358688.5 45 365217.0 46 377375.5 47 389958.0 48 392341.0 49 388578.5 50 386953.5 51 378367.0 52 358861.0 53 336474.0 54 315591.5 55 293535.5 56 270178.0 57 244117.5 58 216419.0 59 188262.0 60 157607.5 61 128017.5 62 101420.5 63 78459.0 64 58615.5 65 42789.5 66 31786.0 67 24082.0 68 17939.0 69 12638.0 70 8779.0 71 6332.5 72 4497.5 73 3079.0 74 2069.5 75 1357.0 76 888.0 77 589.5 78 381.0 79 242.0 80 170.0 81 130.5 82 99.5 83 65.5 84 39.0 85 26.0 86 21.0 87 18.5 88 9.5 89 3.0 90 3.0 91 3.0 92 2.0 93 2.0 94 3.0 95 3.0 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0013833834132767919 5 0.0 6 1.2077156782575167E-4 7 0.0 8 0.0 9 0.0 10-11 0.004056826755601385 12-13 1.0979233438704698E-5 14-15 0.0013065287792058589 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 163.0 20-21 674.0 22-23 1411.0 24-25 3296.0 26-27 3870.0 28-29 8308.0 30-31 20489.0 32-33 24939.0 34-35 34573.0 36-37 48229.0 38-39 53230.0 40-41 58383.0 42-43 68140.0 44-45 80076.0 46-47 76911.0 48-49 70447.0 50-51 60941.0 52-53 60678.0 54-55 70640.0 56-57 75561.0 58-59 74030.0 60-61 75894.0 62-63 78226.0 64-65 82626.0 66-67 87764.0 68-69 75819.0 70-71 74264.0 72-73 72822.0 74-75 75809.0 76-77 73423.0 78-79 78657.0 80-81 80155.0 82-83 79306.0 84-85 82033.0 86-87 86249.0 88-89 91922.0 90-91 96852.0 92-93 101548.0 94-95 116420.0 96-97 305793.0 98-99 550093.0 100-101 5847440.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.29412426634204 #Duplication Level Percentage of deduplicated Percentage of total 1 89.10250078876743 75.10817273930202 2 7.59459196911994 12.803589583943193 3 1.8665730271675347 4.720234161127872 4 0.6674180668362326 2.250376858539807 5 0.30191968030363414 1.27250275249844 6 0.1485278698662406 0.7512016031711979 7 0.09080487227951156 0.5358022031542926 8 0.059311776272781745 0.3999707391676274 9 0.03997193911171541 0.3032459642384637 >10 0.12551687674305767 1.6355388605498005 >50 0.0022963255136383208 0.12788975244681963 >100 5.450732345240598E-4 0.07859501649184988 >500 2.1734783742491955E-5 0.012879765368692566 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0979233438704696E-5 2 0.0 1.0979233438704696E-5 0.0 5.489616719352348E-5 1.0979233438704696E-5 3 0.0 1.0979233438704696E-5 0.0 5.489616719352348E-5 1.0979233438704696E-5 4 0.0 3.2937700316114086E-5 0.0 6.587540063222817E-5 2.1958466877409392E-5 5 0.0 6.587540063222817E-5 0.0 7.685463407093288E-5 2.1958466877409392E-5 6 0.0 6.587540063222817E-5 0.0 7.685463407093288E-5 2.1958466877409392E-5 7 0.0 7.685463407093288E-5 0.0 7.685463407093288E-5 2.1958466877409392E-5 8 0.0 8.783386750963757E-5 0.0 8.783386750963757E-5 2.1958466877409392E-5 9 0.0 1.9762620189668455E-4 0.0 1.0979233438704696E-4 4.3916933754818784E-5 10-11 0.0 1.9762620189668455E-4 0.0 1.0979233438704696E-4 4.9406550474171137E-5 12-13 0.0 2.031158186160369E-4 0.0 1.4273003470316106E-4 5.489616719352348E-5 14-15 0.0 2.6899121924826505E-4 0.0 1.6468850158057045E-4 6.587540063222817E-5 16-17 0.0 2.8546006940632213E-4 0.0 2.250742854934463E-4 7.685463407093288E-5 18-19 0.0 3.2388738644178853E-4 0.0 2.909496861256745E-4 1.26261184545104E-4 20-21 0.0 3.678043201966073E-4 0.0 3.403562365998456E-4 1.3175080126445635E-4 22-23 0.0 4.062316372320738E-4 0.0 6.367955394448723E-4 1.4273003470316106E-4 24-25 0.0 4.501485709868926E-4 0.0 0.001405341880154201 1.5370926814186576E-4 26-27 0.0 4.6112780442559724E-4 0.0 0.003409051982717808 1.5370926814186576E-4 28-29 0.0 4.6112780442559724E-4 0.0 0.012126563333049338 1.5370926814186576E-4 30-31 0.0 5.105343548997684E-4 0.0 0.017753420470385493 1.5370926814186576E-4 32-33 0.0 5.379824384965301E-4 0.0 0.02943532484916729 1.7566773501927514E-4 34-35 0.0 6.203266892868154E-4 0.0 0.04325817974849651 1.9762620189668455E-4 36-37 0.0 7.2462940695451E-4 0.0 0.06188993889397837 2.0860543533538924E-4 38-39 0.0 7.520774905512717E-4 0.0 0.09788535572277172 2.415431356515033E-4 40-41 0.0 8.728490583770234E-4 0.0 0.13615347387337695 2.415431356515033E-4 42-43 0.0 9.057867586931374E-4 0.0 0.16695571328566297 2.415431356515033E-4 44-45 0.0 0.0010155790930801844 0.0 0.2017214559693214 2.415431356515033E-4 46-47 2.1958466877409392E-5 0.0010979233438704696 0.0 0.2365585636703314 2.5252236909020803E-4 48-49 2.1958466877409392E-5 0.0010979233438704696 0.0 0.26251896113614864 2.635016025289127E-4 50-51 2.1958466877409392E-5 0.001279080695609097 0.0 0.28387905979114864 2.635016025289127E-4 52-53 2.1958466877409392E-5 0.0012845703123284494 0.0 0.329706380164302 2.6899121924826505E-4 54-55 2.1958466877409392E-5 0.0013120183959252113 0.0 0.3803975009508016 2.744808359676174E-4 56-57 2.1958466877409392E-5 0.0013504457129606777 0.0 0.43062200431615627 2.7997045268696977E-4 58-59 2.744808359676174E-5 0.0013833834132767917 0.0 0.46531089236574374 2.9643930284502685E-4 60-61 3.2937700316114086E-5 0.0014108314968735536 0.0 0.49095289206183856 3.6231470347725494E-4 62-63 3.2937700316114086E-5 0.0014547484306283724 0.0 0.5101775298130105 4.0623163723207376E-4 64-65 3.2937700316114086E-5 0.001624926548928295 0.0 0.5158318350339435 4.172108706707785E-4 66-67 3.2937700316114086E-5 0.001641395399086352 0.0 0.5216233806728601 4.172108706707785E-4 68-69 3.2937700316114086E-5 0.0016743330994024664 0.0 0.5271349558590899 4.227004873901308E-4 70-71 3.842731703546643E-5 0.0016798227161218186 0.0 0.5323226436588778 4.501485709868926E-4 72-73 4.9406550474171137E-5 0.0016798227161218186 0.0 0.5367692332015532 5.050447381804161E-4 74-75 5.489616719352348E-5 0.0017182500331572848 0.0 0.5400794720833227 5.050447381804161E-4 76-77 5.489616719352348E-5 0.0017951046672282178 0.0 0.5433567732647762 5.050447381804161E-4 78-79 5.489616719352348E-5 0.0018115735173862748 0.0 0.5457118188373782 5.050447381804161E-4 80-81 5.489616719352348E-5 0.0018115735173862748 0.0 0.5464364482443327 5.105343548997684E-4 82-83 5.489616719352348E-5 0.0018225527508249795 0.0 0.5469140448989164 5.215135883384731E-4 84-85 5.489616719352348E-5 0.001828042367544332 0.0 0.5471446088011291 5.324928217771777E-4 86-87 5.489616719352348E-5 0.0018664696845797984 0.0 0.5472269530519195 5.379824384965301E-4 88 5.489616719352348E-5 0.0019213658517733218 0.0 0.5472379322853582 5.379824384965301E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11785 0.0 47.988255 1 GTATCAA 21925 0.0 38.01378 1 TCAACGC 26710 0.0 30.664127 4 ATCAACG 26880 0.0 30.453562 3 TATCAAC 27740 0.0 29.769632 2 CAACGCA 27525 0.0 29.71039 5 AACGCAG 28100 0.0 29.132658 6 CTTATAC 12515 0.0 27.106674 1 ACGCAGA 32100 0.0 25.528873 7 CGCAGAG 32505 0.0 25.171747 8 TATACAC 15650 0.0 23.630022 3 GCAGAGT 38265 0.0 21.361057 9 TTATACA 16415 0.0 21.209639 2 GTACATG 25650 0.0 20.955917 1 TACATGG 26160 0.0 20.27146 2 GAGTACT 23510 0.0 19.35116 12-13 ACATGGG 26575 0.0 19.299852 3 TACACAT 19920 0.0 18.800035 5 AGAGTAC 34485 0.0 18.653923 10-11 CAGAGTA 36885 0.0 18.493483 10-11 >>END_MODULE