##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139225_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9273015 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51887611526564 33.0 33.0 33.0 33.0 33.0 2 32.541961702855005 33.0 33.0 33.0 33.0 33.0 3 32.53493691102624 33.0 33.0 33.0 33.0 33.0 4 36.44083623287572 37.0 37.0 37.0 37.0 37.0 5 36.47573081678397 37.0 37.0 37.0 37.0 37.0 6 36.47477298375987 37.0 37.0 37.0 37.0 37.0 7 36.45258063315976 37.0 37.0 37.0 37.0 37.0 8 36.44713256691594 37.0 37.0 37.0 37.0 37.0 9 36.472156790429004 37.0 37.0 37.0 37.0 37.0 10-11 36.42165476924172 37.0 37.0 37.0 37.0 37.0 12-13 36.39967001023939 37.0 37.0 37.0 37.0 37.0 14-15 38.33756000610373 40.0 37.0 40.0 37.0 40.0 16-17 38.2996252567261 40.0 37.0 40.0 37.0 40.0 18-19 38.33088709551316 40.0 37.0 40.0 37.0 40.0 20-21 38.33142315177056 40.0 37.0 40.0 37.0 40.0 22-23 38.328286601261794 40.0 37.0 40.0 37.0 40.0 24-25 38.299646714791535 40.0 37.0 40.0 37.0 40.0 26-27 38.162351866576955 40.0 37.0 40.0 35.0 40.0 28-29 38.09159053269675 40.0 37.0 40.0 33.0 40.0 30-31 38.013875958111235 40.0 37.0 40.0 33.0 40.0 32-33 37.93063933079446 40.0 37.0 40.0 33.0 40.0 34-35 37.9009187831314 40.0 37.0 40.0 33.0 40.0 36-37 37.83050173672693 40.0 37.0 40.0 33.0 40.0 38-39 37.762583350888505 40.0 37.0 40.0 33.0 40.0 40-41 37.74285070856894 40.0 37.0 40.0 33.0 40.0 42-43 37.68838733895072 40.0 37.0 40.0 33.0 40.0 44-45 37.61352499906394 40.0 37.0 40.0 33.0 40.0 46-47 37.56524085848765 40.0 37.0 40.0 33.0 40.0 48-49 37.55491367205164 40.0 37.0 40.0 33.0 40.0 50-51 37.445342871857235 40.0 37.0 40.0 33.0 40.0 52-53 37.33770498840311 40.0 37.0 40.0 33.0 40.0 54-55 37.159348130729676 40.0 37.0 40.0 33.0 40.0 56-57 37.03721281579445 37.0 37.0 40.0 33.0 40.0 58-59 36.920077468454934 37.0 37.0 40.0 33.0 40.0 60-61 36.77848637738383 37.0 37.0 40.0 33.0 40.0 62-63 36.62650233612706 37.0 37.0 40.0 33.0 40.0 64-65 36.44521281218635 37.0 37.0 40.0 33.0 40.0 66-67 36.24375923343387 37.0 37.0 40.0 33.0 40.0 68-69 36.03361873931199 37.0 37.0 40.0 33.0 40.0 70-71 35.78148567933424 37.0 35.0 37.0 33.0 40.0 72-73 35.59223811565571 37.0 33.0 37.0 33.0 40.0 74-75 35.40495103703991 37.0 33.0 37.0 33.0 40.0 76-77 33.57241167788321 35.0 33.0 37.0 27.0 37.0 78-79 34.89250954710574 37.0 33.0 37.0 33.0 37.0 80-81 34.961345110627896 37.0 33.0 37.0 33.0 37.0 82-83 34.834939508130994 37.0 33.0 37.0 33.0 37.0 84-85 34.69899665009744 37.0 33.0 37.0 33.0 37.0 86-87 34.60979827077888 37.0 33.0 37.0 33.0 37.0 88-89 34.49754315245359 37.0 33.0 37.0 33.0 37.0 90-91 34.444898571542154 37.0 33.0 37.0 33.0 37.0 92-93 34.387119291920015 37.0 33.0 37.0 30.0 37.0 94-95 34.409803603938265 37.0 33.0 37.0 33.0 37.0 96-97 34.40061356332017 37.0 33.0 37.0 33.0 37.0 98-99 34.404738283546145 37.0 33.0 37.0 33.0 37.0 100 34.387664526643405 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 2.0 19 26.0 20 111.0 21 524.0 22 1952.0 23 5290.0 24 11792.0 25 22685.0 26 38170.0 27 59318.0 28 86054.0 29 119208.0 30 159121.0 31 207846.0 32 272272.0 33 358296.0 34 483240.0 35 686691.0 36 1165106.0 37 2634556.0 38 2882834.0 39 77920.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.06930701611072 20.346230433143912 14.33955407168003 24.24490847906533 2 14.523863058562938 20.917997005289003 41.78969838828041 22.768441547867656 3 17.835364226198276 26.535533480750328 30.79978841832996 24.829313874721436 4 12.350235632865662 18.502399465108002 37.90824876791511 31.239116134111228 5 13.334681330721454 37.63445869547283 35.36859370981283 13.662266263992887 6 29.593344292744835 37.5557154941376 18.767834026600223 14.083106186517336 7 26.052896495907753 32.78766399062225 22.77100813489464 18.388431378575362 8 24.509363998656315 36.311490922855185 21.293807893117826 17.88533718537067 9 25.414528068810416 16.620365652379512 20.857024387429547 37.10808189138053 10-11 24.2132694148715 26.518679078368883 28.568002211234827 20.700049295524785 12-13 25.2422796537501 24.122115210982926 28.512031175194558 22.123573960072417 14-15 22.415428387358794 25.427599038529664 26.114133245104732 26.04283932900681 16-17 21.96322339605835 28.754590605105246 26.72989313615906 22.55229286267735 18-19 21.9508379960563 27.619069957290048 28.607356938385198 21.822735108268454 20-21 22.787526277380213 26.69124524451269 28.53715672518139 21.98407175292571 22-23 22.550612725992305 27.108528561891976 28.308818235848076 22.032040476267643 24-25 22.381826239279416 27.32523267537467 28.412982096019086 21.879958989326827 26-27 22.22124497234164 27.669502388018003 28.42451785173833 21.684734787902034 28-29 22.121759439092344 27.329212833780574 28.525730537469023 22.023297189658063 30-31 22.701312485547547 27.002476389865297 28.45523520190302 21.840975922684137 32-33 22.282339110318937 27.23330967640574 28.553772557602812 21.930578655672516 34-35 22.286708209573103 26.969942597202618 28.72045272868525 22.022896464539038 36-37 22.174146093510576 27.317686959123094 28.41299934200958 22.095167605356746 38-39 22.132471719734337 26.883580482528043 28.67819504287355 22.305752754864073 40-41 22.24419651246203 26.709736300057457 28.76619111203162 22.279876075448897 42-43 22.360974466502885 26.763234718736108 28.59512866715484 22.28066214760617 44-45 22.1003554595501 27.12112363108436 28.334714668299338 22.443806241066206 46-47 22.61928302947685 26.810053840813435 27.763245735041004 22.80741739466871 48-49 22.46550292767972 27.016601440892252 27.767617783819887 22.750277847608142 50-51 22.288665741701188 27.27380613337815 27.799306310356208 22.63822181456445 52-53 22.416851734891353 27.29809568020951 27.93898181931323 22.34607076558591 54-55 22.3445139583026 27.358883505870224 27.53109907220735 22.765503463619833 56-57 22.625699998342817 27.5665744011251 27.209598311694556 22.59812728883753 58-59 22.196246121697552 27.83812982513843 27.650887218487448 22.314736834676573 60-61 22.593953574961272 28.040124111958008 27.1093802348168 22.256542078263923 62-63 22.351894319690633 28.229346413911642 27.121050763223288 22.29770850317444 64-65 22.422283628143095 27.937181893754282 27.121267210499738 22.519267267602885 66-67 22.51987836426279 27.738773834092267 27.04207094923248 22.69927685241246 68-69 22.53752117397295 27.58777548668726 27.169753221088094 22.704950118251695 70-71 22.53946572662068 27.37856379133483 27.22287035765633 22.859100124388156 72-73 22.630801634156313 27.387383325382388 27.11528716665339 22.866527873807907 74-75 22.51146527485167 27.550215448704286 27.123013613334813 22.815305663109235 76-77 22.689427056371407 27.42801851668967 27.038923279750033 22.84363114718889 78-79 22.594992706664435 27.40175452791171 27.045902645680815 22.95735011974304 80-81 22.600276083089213 27.469545755200986 27.04441804972475 22.885760111985054 82-83 22.737250035579805 27.37300218657707 27.1489247071165 22.740823070726627 84-85 22.78216992296872 27.33673481049256 27.099993785455112 22.781101481083606 86-87 22.62119660588238 27.40646183149317 27.170253989926174 22.80208757269827 88-89 22.66951345684063 27.324466545141128 27.159172622543633 22.84684737547461 90-91 22.77217124160299 27.316767354382765 27.13565144314386 22.775409960870384 92-93 22.846310859983255 27.18701945538123 27.233518443319348 22.733151241316175 94-95 22.58789588067484 27.298383516322843 27.298289743982036 22.81543085902028 96-97 22.7109369589611 27.3634271997002 27.311719289486508 22.613916551852192 98-99 23.865270325436956 29.2386265743937 27.513618370171166 19.38248472999818 100 22.716261462794858 30.30503456638478 21.33632005125066 25.642383919569706 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2005.0 1 1865.0 2 2831.5 3 4192.0 4 5817.5 5 9640.0 6 12848.5 7 14933.5 8 16277.0 9 15870.5 10 14224.0 11 12649.5 12 13640.5 13 18031.5 14 28325.0 15 42751.0 16 54538.5 17 61280.0 18 62378.5 19 58213.5 20 51334.5 21 44549.5 22 40326.0 23 40526.5 24 45288.0 25 54949.5 26 68727.0 27 84246.5 28 100785.0 29 119633.0 30 138161.5 31 157149.0 32 177688.0 33 196943.0 34 216985.0 35 235533.0 36 254145.0 37 273359.0 38 289137.0 39 301550.0 40 313312.0 41 325027.0 42 333844.0 43 342695.5 44 352521.5 45 364179.5 46 383772.5 47 406093.0 48 411207.0 49 407441.0 50 408446.0 51 401088.0 52 379545.0 53 352125.0 54 328838.0 55 307526.5 56 285468.0 57 259943.0 58 232062.0 59 201275.5 60 167378.0 61 137963.5 62 110383.0 63 85741.0 64 65747.5 65 48459.0 66 36212.0 67 27507.0 68 20024.5 69 14140.0 70 10117.0 71 7382.5 72 5251.0 73 3603.5 74 2481.0 75 1707.0 76 1105.5 77 689.0 78 473.0 79 342.5 80 230.5 81 147.5 82 115.5 83 88.0 84 53.5 85 29.0 86 19.5 87 16.0 88 13.5 89 12.0 90 10.0 91 6.0 92 2.5 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.00124015759707064 5 0.0 6 1.1862377015458295E-4 7 0.0 8 0.0 9 0.0 10-11 0.003968504310626048 12-13 1.617596865744313E-5 14-15 0.0014450532000649197 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 186.0 20-21 700.0 22-23 1488.0 24-25 3243.0 26-27 4185.0 28-29 8537.0 30-31 19966.0 32-33 24348.0 34-35 33766.0 36-37 47162.0 38-39 52911.0 40-41 57428.0 42-43 68524.0 44-45 80822.0 46-47 78221.0 48-49 71063.0 50-51 60469.0 52-53 59293.0 54-55 71373.0 56-57 79260.0 58-59 78674.0 60-61 85819.0 62-63 86024.0 64-65 88632.0 66-67 93370.0 68-69 75301.0 70-71 73250.0 72-73 71096.0 74-75 74611.0 76-77 72041.0 78-79 78535.0 80-81 80331.0 82-83 78717.0 84-85 80344.0 86-87 84905.0 88-89 91699.0 90-91 96336.0 92-93 101892.0 94-95 116607.0 96-97 311838.0 98-99 560954.0 100-101 5969094.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.7072773821949 #Duplication Level Percentage of deduplicated Percentage of total 1 87.63822449344191 71.60680717968727 2 8.186105603105274 13.37728802385725 3 2.2711331330032407 5.567043146105673 4 0.8822928753469147 2.883589947932187 5 0.39598735032275567 1.6177524136330894 6 0.20788216676699495 1.0191291517705532 7 0.12155005047063988 0.6952066582737054 8 0.08014389611300278 0.5238671640155944 9 0.0532961547011155 0.39192153260115736 >10 0.15917650063486818 2.007677243669195 >50 0.0032561718120921266 0.18183724281759464 >100 9.275953470778192E-4 0.11750287810324192 >500 2.4008934094646072E-5 0.01037741753354982 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0783979104962086E-5 0.0 1.0783979104962086E-5 0.0 3 0.0 1.0783979104962086E-5 0.0 2.1567958209924173E-5 0.0 4 0.0 9.705581194465878E-5 0.0 5.391989552481043E-5 0.0 5 0.0 1.0783979104962086E-4 0.0 6.470387462977252E-5 0.0 6 6.470387462977252E-5 1.0783979104962086E-4 0.0 7.54878537347346E-5 0.0 7 6.470387462977252E-5 1.0783979104962086E-4 0.0 1.0783979104962086E-4 0.0 8 6.470387462977252E-5 1.1862377015458295E-4 0.0 1.509757074694692E-4 0.0 9 6.470387462977252E-5 2.372475403091659E-4 0.0 2.1567958209924173E-4 0.0 10-11 9.705581194465878E-5 2.372475403091659E-4 0.0 2.5881549851909007E-4 0.0 12-13 1.509757074694692E-4 2.372475403091659E-4 0.0 2.9655942538645735E-4 0.0 14-15 1.6715167612691234E-4 3.343033522538247E-4 0.0 3.127353940439005E-4 0.0 16-17 2.0489560299427964E-4 3.396953418063057E-4 0.0 3.235193731488626E-4 0.0 18-19 2.0489560299427964E-4 3.77439268673673E-4 0.0 3.936152373311162E-4 0.0 20-21 2.1567958209924173E-4 4.2057518509352137E-4 0.0 4.906710492757749E-4 0.0 22-23 2.2107157165172277E-4 4.906710492757749E-4 0.0 6.901746627175735E-4 0.0 24-25 2.48031519414128E-4 5.230229865906611E-4 0.0 0.0015475010015620592 0.0 26-27 2.5881549851909007E-4 5.391989552481043E-4 0.0 0.0034508733135878676 0.0 28-29 2.5881549851909007E-4 5.391989552481043E-4 0.0 0.011954040837850472 0.0 30-31 2.5881549851909007E-4 6.308627776402821E-4 0.0 0.016305376406702675 0.0 32-33 2.5881549851909007E-4 6.36254767192763E-4 0.0 0.024991871575749634 0.0 34-35 2.9116743583397633E-4 7.764464955572702E-4 0.0 0.035980746283706 0.0 36-37 3.235193731488626E-4 9.004622552643342E-4 0.0 0.051256252685884796 0.0 38-39 3.235193731488626E-4 9.274222030267394E-4 0.0 0.08304742308731303 0.0 40-41 3.235193731488626E-4 0.0010676139313912465 0.0 0.11864533811279288 0.0 42-43 3.343033522538247E-4 0.0010999658687061327 0.0 0.14521706262741946 0.0 44-45 3.343033522538247E-4 0.001234765607518159 0.0 0.17669549763480377 0.0 46-47 3.343033522538247E-4 0.0013372134090152987 0.0 0.2064700639436041 0.0 48-49 3.343033522538247E-4 0.0013533893776727418 0.0 0.23228151793133084 0.0 50-51 3.4508733135878676E-4 0.0015313250329046161 0.0 0.25283039011583613 0.0 52-53 3.5587131046374885E-4 0.0015421090120095783 0.0 0.29918532429851563 0.0 54-55 3.5587131046374885E-4 0.0015744609493244647 0.0 0.3521238777247745 0.0 56-57 3.5587131046374885E-4 0.0016175968657443128 0.0 0.40424824072860877 0.0 58-59 3.5587131046374885E-4 0.001644556813506718 0.0 0.43713398500919065 0.0 60-61 3.6126330001622986E-4 0.0016876927299265664 0.0 0.4576990331623534 0.0 62-63 3.990072268835972E-4 0.0016930847194790476 0.0 0.4713084147928155 0.0 64-65 3.990072268835972E-4 0.0019626841971030996 0.0 0.47646854879453987 0.0 66-67 3.990072268835972E-4 0.002000428123970467 0.0 0.4813536913290877 0.0 68-69 3.990072268835972E-4 0.0020705239881527206 0.0 0.4860177622919838 0.0 70-71 4.1518319554104035E-4 0.00211905189412505 0.0 0.49029900199665377 0.0 72-73 4.583191119608887E-4 0.002124443883677531 0.0 0.4937930112266614 0.0 74-75 4.637111015133697E-4 0.0022107157165172277 0.0 0.49666154966858134 0.0 76-77 4.637111015133697E-4 0.0023131635180143675 0.0 0.4998266475358877 0.0 78-79 4.744950806183318E-4 0.0023401234657767726 0.0 0.5018917795344879 0.0 80-81 4.744950806183318E-4 0.0023401234657767726 0.0 0.5024201945106311 0.0 82-83 4.744950806183318E-4 0.0023724754030916588 0.0 0.5027976337793048 0.0 84-85 4.744950806183318E-4 0.0023724754030916588 0.0 0.5030510572882714 0.0 86-87 4.852790597232939E-4 0.0023886513717491023 0.0 0.5031642890688734 0.0 88 5.06847017933218E-4 0.002545019068771052 0.0 0.503169681058426 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13670 0.0 50.201115 1 CTTATAC 14480 0.0 36.13122 1 GTATCAA 24460 0.0 36.09429 1 TATACAC 18310 0.0 30.892736 3 TTATACA 18405 0.0 29.279678 2 TCAACGC 30185 0.0 28.72875 4 ATCAACG 30435 0.0 28.505953 3 CAACGCA 30885 0.0 28.064024 5 TATCAAC 31125 0.0 28.037737 2 AACGCAG 31315 0.0 27.73291 6 ACGCAGA 35915 0.0 24.180744 7 TACACAT 23595 0.0 23.59594 5 CGCAGAG 37240 0.0 23.332047 8 GTACATG 31545 0.0 21.835382 1 ACACATC 24635 0.0 21.703396 6 TACATGG 31675 0.0 21.343563 2 ACATCTC 25145 0.0 21.297092 8 ATACACA 28155 0.0 21.071386 4 ACATGGG 31765 0.0 20.908766 3 GCAGAGT 42400 0.0 20.4731 9 >>END_MODULE