##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139221_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10913760 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52654914529914 33.0 33.0 33.0 33.0 33.0 2 32.547828062922406 33.0 33.0 33.0 33.0 33.0 3 32.54260135828532 33.0 33.0 33.0 33.0 33.0 4 36.449929538490856 37.0 37.0 37.0 37.0 37.0 5 36.48595635234786 37.0 37.0 37.0 37.0 37.0 6 36.485126390904696 37.0 37.0 37.0 37.0 37.0 7 36.46656935831464 37.0 37.0 37.0 37.0 37.0 8 36.46165006377271 37.0 37.0 37.0 37.0 37.0 9 36.481397795077044 37.0 37.0 37.0 37.0 37.0 10-11 36.43543416750964 37.0 37.0 37.0 37.0 37.0 12-13 36.416670744088194 37.0 37.0 37.0 37.0 37.0 14-15 38.37039622458255 40.0 37.0 40.0 37.0 40.0 16-17 38.33577021118295 40.0 37.0 40.0 37.0 40.0 18-19 38.36844671314011 40.0 37.0 40.0 37.0 40.0 20-21 38.36916800823421 40.0 37.0 40.0 37.0 40.0 22-23 38.36957068997468 40.0 37.0 40.0 37.0 40.0 24-25 38.34471637231145 40.0 37.0 40.0 37.0 40.0 26-27 38.22075177330345 40.0 37.0 40.0 37.0 40.0 28-29 38.16585512801784 40.0 37.0 40.0 37.0 40.0 30-31 38.09122573764044 40.0 37.0 40.0 33.0 40.0 32-33 38.011317192684054 40.0 37.0 40.0 33.0 40.0 34-35 37.98623905700654 40.0 37.0 40.0 33.0 40.0 36-37 37.93133467118221 40.0 37.0 40.0 33.0 40.0 38-39 37.87796311579733 40.0 37.0 40.0 33.0 40.0 40-41 37.85096876461999 40.0 37.0 40.0 33.0 40.0 42-43 37.79429756944934 40.0 37.0 40.0 33.0 40.0 44-45 37.721810787551476 40.0 37.0 40.0 33.0 40.0 46-47 37.68012440067206 40.0 37.0 40.0 33.0 40.0 48-49 37.66776289774714 40.0 37.0 40.0 33.0 40.0 50-51 37.58299165731019 40.0 37.0 40.0 33.0 40.0 52-53 37.487129859807396 40.0 37.0 40.0 33.0 40.0 54-55 37.30645912062822 40.0 37.0 40.0 33.0 40.0 56-57 37.18982766606311 38.5 37.0 40.0 33.0 40.0 58-59 37.07838769783157 37.0 37.0 40.0 33.0 40.0 60-61 36.94278080966011 37.0 37.0 40.0 33.0 40.0 62-63 36.7906170381345 37.0 37.0 40.0 33.0 40.0 64-65 36.60884989422675 37.0 37.0 40.0 33.0 40.0 66-67 36.40725586304084 37.0 37.0 40.0 33.0 40.0 68-69 36.196174991094324 37.0 37.0 40.0 33.0 40.0 70-71 35.94290760574292 37.0 37.0 38.5 33.0 40.0 72-73 35.748805152908844 37.0 33.0 37.0 33.0 40.0 74-75 35.55307194238342 37.0 33.0 37.0 33.0 40.0 76-77 33.73392038764818 35.0 33.0 37.0 27.0 37.0 78-79 35.0274173591056 37.0 33.0 37.0 33.0 37.0 80-81 35.083176950167214 37.0 33.0 37.0 33.0 37.0 82-83 34.94593304495095 37.0 33.0 37.0 33.0 37.0 84-85 34.80262468399644 37.0 33.0 37.0 33.0 37.0 86-87 34.699640720242755 37.0 33.0 37.0 33.0 37.0 88-89 34.57922980838015 37.0 33.0 37.0 33.0 37.0 90-91 34.51932806547653 37.0 33.0 37.0 33.0 37.0 92-93 34.46069317083291 37.0 33.0 37.0 33.0 37.0 94-95 34.476625377887046 37.0 33.0 37.0 33.0 37.0 96-97 34.461606759251126 37.0 33.0 37.0 33.0 37.0 98-99 34.45799555940896 37.0 33.0 37.0 33.0 37.0 100 34.44161575239022 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 1.0 15 0.0 16 0.0 17 0.0 18 5.0 19 20.0 20 108.0 21 476.0 22 1825.0 23 5390.0 24 12233.0 25 24361.0 26 41353.0 27 65007.0 28 94760.0 29 130939.0 30 175352.0 31 232277.0 32 303409.0 33 403241.0 34 546271.0 35 780645.0 36 1329452.0 37 3068946.0 38 3596417.0 39 101271.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.31236164255032 20.481978713110788 14.476394936300597 23.729264708038293 2 14.370226209848852 21.236988902083244 41.92552337599507 22.467261512072835 3 17.67816957675448 26.66112320593453 31.0051256395596 24.65558157775139 4 12.133429005931951 18.55079286787716 39.29816433775481 30.01761378843607 5 13.052192828136224 37.870110759261706 35.88673381126211 13.190962601339958 6 29.045899634653434 38.52189353482356 18.98173010607631 13.4504767244467 7 25.631074899942824 33.09838222574072 23.496815029833897 17.77372784448256 8 23.956647388251163 36.84532186890677 21.550079899136502 17.64795084370556 9 25.03217956048145 16.997890736098284 21.485638313468503 36.484291389951764 10-11 23.615216503976356 27.005114803957714 29.228250995812775 20.15141769625315 12-13 24.66745875550303 24.56125336833991 29.297229304770244 21.474058571386813 14-15 21.89541603305379 25.945297263855277 26.8936549282895 25.265631774801435 16-17 21.414640783744556 29.186068779229156 27.507669217574875 21.89162121945141 18-19 21.388504053598393 28.031301769509316 29.423580874052575 21.15661330283972 20-21 22.057007370527383 27.165755590387143 29.454121174702884 21.32311586438259 22-23 21.745479520845702 27.264344938309616 29.32856268373324 21.66161285711144 24-25 21.632424972244703 27.457215869184708 29.388794988767273 21.521564169803316 26-27 21.514627573438588 27.55830627571055 29.350075663853993 21.57699048699687 28-29 21.398524021794785 27.3704056610229 29.428237310790312 21.802833006392003 30-31 21.616968960204495 27.260631997634782 29.44462399850154 21.67777504365918 32-33 21.470355632336954 27.508143511230752 29.35025477733956 21.671246079092732 34-35 21.55987125969141 27.726873723473865 29.391916031328936 21.32133898550579 36-37 21.664791764696034 27.57184537856669 29.05441249055206 21.708950366185213 38-39 21.61858153723186 27.569728989592047 29.173283662540783 21.638405810635305 40-41 21.746514281285087 27.491484879634985 29.112963644772687 21.649037194307237 42-43 21.8301658080843 27.517571133599223 29.002772422073882 21.649490636242593 44-45 21.74515858488214 27.745430752404133 28.73706370597848 21.77234695673525 46-47 22.01584098538999 27.572505154496586 28.343073181689626 22.0685806784238 48-49 21.887553598960785 27.718360928274627 28.34801500554559 22.046070467218996 50-51 21.80466624402964 27.955894592820734 28.240983300833282 21.998455862316344 52-53 21.94632313394408 27.908056598775527 28.26145411663902 21.88416615064137 54-55 21.949170932857967 27.854322513709928 28.105130061614396 22.09137649181771 56-57 22.094523059226212 27.96169628343172 27.9210274977359 22.02275315960617 58-59 21.83258394993874 28.079051628477764 28.191333283722784 21.897031137860708 60-61 22.061460743773303 28.226906180891014 27.9019659514671 21.80966712386858 62-63 21.903706883406763 28.366375059208266 27.876507783047945 21.85341027433703 64-65 21.95940135766008 28.165737820862574 27.866300018712302 22.008560802765043 66-67 22.02470471275859 28.099705483912185 27.770245933669628 22.105343869659595 68-69 21.97520680991018 28.019273389762596 27.86705107015259 22.13846873017463 70-71 21.979860692125026 27.839071504078245 27.933029106217056 22.248038697579673 72-73 22.07944441634474 27.85771377372613 27.824098612124708 22.238743197804425 74-75 21.978519817877114 27.943288751101765 27.830831611381406 22.24735981963972 76-77 22.09570264753221 27.902241218495295 27.746905707752155 22.25515042622034 78-79 22.06685576858732 27.851626463161317 27.723978569662933 22.357539198588427 80-81 22.074319327853537 27.898978231494816 27.714053619251455 22.31264882140019 82-83 22.13323671862403 27.868539669821534 27.782090624589888 22.216132986964542 84-85 22.19477272600473 27.806627707380095 27.746496422808477 22.2521031438067 86-87 22.118733445498872 27.779766084030268 27.832812271757824 22.268688198713036 88-89 22.13904720509999 27.73283051323275 27.83107527371395 22.29704700795331 90-91 22.14358076644375 27.757406673202496 27.83164419707686 22.26736836327689 92-93 22.196309667647075 27.60275771713465 27.921264528980544 22.279668086237727 94-95 22.050340348694185 27.706899246383195 27.920750164248894 22.32201024067373 96-97 22.159552014312016 27.82256409313838 27.966719662785387 22.051164229764215 98-99 23.27296420590423 29.701204171990103 28.17692178827133 18.848909833834334 100 22.17282929255125 30.71337237600158 22.057544069839768 25.056254261607403 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2910.0 1 2461.5 2 3319.5 3 4914.0 4 6559.5 5 10379.5 6 13869.5 7 17053.5 8 19784.0 9 19907.5 10 17471.5 11 15109.0 12 16216.0 13 21417.0 14 33367.0 15 49248.5 16 61757.5 17 68799.5 18 69993.5 19 66067.0 20 60133.0 21 54972.5 22 53173.0 23 57062.5 24 66625.0 25 82428.0 26 103093.5 27 125660.5 28 149687.5 29 175755.0 30 198604.5 31 218887.5 32 240249.5 33 261252.0 34 283708.0 35 304424.0 36 325562.5 37 344956.5 38 360623.5 39 376108.0 40 390231.5 41 400928.5 42 407678.0 43 415960.5 44 422458.0 45 430109.0 46 441914.5 47 451308.5 48 451906.0 49 445868.5 50 440638.0 51 427088.0 52 404516.0 53 376492.5 54 346640.0 55 318861.5 56 290425.0 57 260910.0 58 230141.5 59 199268.0 60 166750.5 61 134751.5 62 105982.0 63 80139.5 64 58311.5 65 42149.0 66 31248.5 67 23652.5 68 17712.0 69 12698.0 70 9055.0 71 6555.0 72 4594.5 73 3121.5 74 2140.0 75 1460.0 76 965.5 77 634.0 78 410.5 79 265.0 80 185.0 81 128.0 82 96.0 83 63.0 84 42.0 85 34.5 86 30.0 87 25.5 88 20.5 89 17.0 90 13.5 91 8.5 92 4.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.001383574496782044 5 0.0 6 1.1911568515342102E-4 7 0.0 8 0.0 9 0.0 10-11 0.004017863687675008 12-13 9.162745011801616E-6 14-15 0.001429388221841052 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 162.0 20-21 709.0 22-23 1520.0 24-25 3257.0 26-27 4199.0 28-29 8653.0 30-31 18117.0 32-33 23328.0 34-35 33349.0 36-37 45733.0 38-39 52699.0 40-41 58156.0 42-43 72325.0 44-45 86562.0 46-47 84947.0 48-49 77688.0 50-51 67537.0 52-53 66005.0 54-55 75386.0 56-57 81949.0 58-59 82238.0 60-61 84492.0 62-63 87863.0 64-65 93798.0 66-67 97657.0 68-69 87232.0 70-71 86370.0 72-73 83559.0 74-75 86853.0 76-77 85616.0 78-79 92953.0 80-81 94969.0 82-83 92293.0 84-85 94921.0 86-87 100227.0 88-89 108736.0 90-91 114397.0 92-93 121241.0 94-95 137974.0 96-97 366312.0 98-99 666989.0 100-101 7184789.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.50289453275639 #Duplication Level Percentage of deduplicated Percentage of total 1 87.89040042454982 72.51212436668361 2 8.186362098442974 13.507971376295899 3 2.1620063899695827 5.351153555124176 4 0.8164085190066556 2.6942426375699977 5 0.4000170841225326 1.6501283651331022 6 0.18513410100079838 0.916445952557132 7 0.1053199406439294 0.6082439968599589 8 0.06839846853861087 0.4514457308834454 9 0.043042235521690855 0.31959981159301093 >10 0.13957984970051227 1.7358773908072822 >50 0.002723247179919844 0.1511326884694885 >100 5.68693452187942E-4 0.07902900846527815 >500 3.894787078650636E-5 0.022605119557629956 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.162745011801616E-6 2 0.0 3.6650980047206465E-5 0.0 0.0 1.8325490023603232E-5 3 0.0 3.6650980047206465E-5 0.0 0.0 1.8325490023603232E-5 4 0.0 6.413921508261131E-5 0.0 0.0 1.8325490023603232E-5 5 0.0 9.162745011801615E-5 0.0 9.162745011801616E-6 1.8325490023603232E-5 6 0.0 9.162745011801615E-5 0.0 9.162745011801616E-6 1.8325490023603232E-5 7 0.0 1.0079019512981777E-4 0.0 9.162745011801616E-6 1.8325490023603232E-5 8 0.0 1.19115685153421E-4 0.0 9.162745011801616E-6 1.8325490023603232E-5 9 0.0 2.5655686033044525E-4 0.0 1.8325490023603232E-5 1.8325490023603232E-5 10-11 0.0 2.5655686033044525E-4 0.0 2.2906862529504038E-5 1.8325490023603232E-5 12-13 0.0 2.611382328363461E-4 0.0 2.7488235035404847E-5 2.2906862529504038E-5 14-15 0.0 3.848352904956678E-4 0.0 3.6650980047206465E-5 3.665098004720646E-5 16-17 0.0 4.123235255310727E-4 0.0 5.0395097564908885E-5 6.413921508261131E-5 18-19 0.0 4.260676430487751E-4 0.0 1.0537156763571859E-4 6.413921508261131E-5 20-21 0.0 4.443931330723784E-4 0.0 1.6951078271832987E-4 6.413921508261131E-5 22-23 0.0 4.947882306372872E-4 0.0 3.023705853894533E-4 6.872058758851211E-5 24-25 0.0 5.589274457198986E-4 0.0 8.017401885326413E-4 7.330196009441293E-5 26-27 0.0 5.864156807553034E-4 0.0 0.002171570567796983 7.330196009441293E-5 28-29 0.0 5.864156807553034E-4 0.0 0.008695445016199732 7.330196009441293E-5 30-31 0.0 6.597176408497163E-4 0.0 0.010280599903241414 7.330196009441293E-5 32-33 9.162745011801616E-6 6.597176408497163E-4 0.0 0.013253910659571037 7.330196009441293E-5 34-35 9.162745011801616E-6 7.87996071014939E-4 0.0 0.016987729251880194 8.246470510621453E-5 36-37 9.162745011801616E-6 9.254372461919632E-4 0.0 0.02258616645409098 8.246470510621453E-5 38-39 9.162745011801616E-6 9.758323437568721E-4 0.0 0.03659142220462975 8.246470510621453E-5 40-41 9.162745011801616E-6 0.0010812039113925907 0.0 0.05173743970913783 8.246470510621453E-5 42-43 9.162745011801616E-6 0.0011041107739220945 0.0 0.06162862294937767 8.246470510621453E-5 44-45 9.162745011801616E-6 0.001214063714063714 0.0 0.07411744440046328 8.246470510621453E-5 46-47 9.162745011801616E-6 0.0012736215566404245 0.0 0.08695445016199733 9.162745011801615E-5 48-49 9.162745011801616E-6 0.0012827843016522261 0.0 0.09854074122942047 1.0079019512981777E-4 50-51 9.162745011801616E-6 0.0014202254768292503 0.0 0.11031028719707965 1.0079019512981777E-4 52-53 9.162745011801616E-6 0.001429388221841052 0.0 0.1366302722434798 1.0995294014161939E-4 54-55 9.162745011801616E-6 0.0014889460644177625 0.0 0.1690022503701749 1.19115685153421E-4 56-57 9.162745011801616E-6 0.0015210156719590682 0.0 0.2035412176921611 1.19115685153421E-4 58-59 9.162745011801616E-6 0.0015347597894767705 0.0 0.23496943308264062 1.3285980267112343E-4 60-61 9.162745011801616E-6 0.0015622480245121753 0.0 0.2473528829660905 1.4660392018882586E-4 62-63 9.162745011801616E-6 0.001598899004559382 0.0 0.2619445543973846 1.4660392018882586E-4 64-65 9.162745011801616E-6 0.00181422351233672 0.0 0.26799654747767954 1.4660392018882586E-4 66-67 9.162745011801616E-6 0.0018233862573485216 0.0 0.27297649939159374 1.4660392018882586E-4 68-69 9.162745011801616E-6 0.0018462931198780256 0.0 0.27812138071572035 1.4660392018882586E-4 70-71 9.162745011801616E-6 0.001864618609901629 0.0 0.2828401943967982 1.649294102124291E-4 72-73 9.162745011801616E-6 0.001878362727419331 0.0 0.28669771004676664 1.9241764524783393E-4 74-75 9.162745011801616E-6 0.0019150137074665377 0.0 0.2896893462931199 1.9241764524783393E-4 76-77 9.162745011801616E-6 0.0019974784125727525 0.0 0.2923877746990955 1.9241764524783393E-4 78-79 9.162745011801616E-6 0.0020341293926199587 0.0 0.2944173227192095 1.9241764524783393E-4 80-81 9.162745011801616E-6 0.00204329213763176 0.0 0.29519157467270674 1.9699901775373474E-4 82-83 9.162745011801616E-6 0.0020570362551494627 0.0 0.29568178153083813 2.0158039025963554E-4 84-85 9.162745011801616E-6 0.0020707803726671653 0.0 0.29587878054859185 2.0158039025963554E-4 86-87 9.162745011801616E-6 0.0021349195877497762 0.0 0.2959704079987099 2.0158039025963554E-4 88 9.162745011801616E-6 0.0022265470378677924 0.0 0.2959841521162276 2.0158039025963554E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15480 0.0 48.207615 1 GTATCAA 27005 0.0 36.63876 1 TCAACGC 33165 0.0 29.356152 4 ATCAACG 33500 0.0 29.061523 3 CAACGCA 33965 0.0 28.678648 5 TATCAAC 34600 0.0 28.298742 2 AACGCAG 34480 0.0 28.225418 6 CTTATAC 11015 0.0 27.333166 1 ACGCAGA 39475 0.0 24.686377 7 CGCAGAG 40430 0.0 24.114088 8 TATACAC 15985 0.0 21.330048 3 GCAGAGT 47110 0.0 20.467571 9 GAGTACT 28885 0.0 20.193419 12-13 GTGGTAT 7385 0.0 20.151917 1 GTACATG 31470 0.0 20.006296 1 TTATACA 16585 0.0 19.420563 2 TACATGG 31045 0.0 19.340769 2 AGAGTAC 42070 0.0 18.983765 10-11 CAGAGTA 45060 0.0 18.823503 10-11 ACATGGG 31150 0.0 18.642235 3 >>END_MODULE