##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139220_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12298676 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51361268481258 33.0 33.0 33.0 33.0 33.0 2 32.540142532415686 33.0 33.0 33.0 33.0 33.0 3 32.53386600313725 33.0 33.0 33.0 33.0 33.0 4 36.43996784694548 37.0 37.0 37.0 37.0 37.0 5 36.476128649945736 37.0 37.0 37.0 37.0 37.0 6 36.474555309856115 37.0 37.0 37.0 37.0 37.0 7 36.45416742420078 37.0 37.0 37.0 37.0 37.0 8 36.4473380711875 37.0 37.0 37.0 37.0 37.0 9 36.47226644559138 37.0 37.0 37.0 37.0 37.0 10-11 36.422454782937606 37.0 37.0 37.0 37.0 37.0 12-13 36.40350323075427 37.0 37.0 37.0 37.0 37.0 14-15 38.352240111049355 40.0 37.0 40.0 37.0 40.0 16-17 38.31875036792578 40.0 37.0 40.0 37.0 40.0 18-19 38.34207035781738 40.0 37.0 40.0 37.0 40.0 20-21 38.33515410898124 40.0 37.0 40.0 37.0 40.0 22-23 38.33432348143414 40.0 37.0 40.0 37.0 40.0 24-25 38.307597247752994 40.0 37.0 40.0 37.0 40.0 26-27 38.18352154331951 40.0 37.0 40.0 37.0 40.0 28-29 38.12356979404248 40.0 37.0 40.0 33.0 40.0 30-31 38.04555311964484 40.0 37.0 40.0 33.0 40.0 32-33 37.968993300823136 40.0 37.0 40.0 33.0 40.0 34-35 37.94178943007746 40.0 37.0 40.0 33.0 40.0 36-37 37.88337667717035 40.0 37.0 40.0 33.0 40.0 38-39 37.82771067988753 40.0 37.0 40.0 33.0 40.0 40-41 37.79933982538782 40.0 37.0 40.0 33.0 40.0 42-43 37.73887817778903 40.0 37.0 40.0 33.0 40.0 44-45 37.665478026582846 40.0 37.0 40.0 33.0 40.0 46-47 37.62112422710389 40.0 37.0 40.0 33.0 40.0 48-49 37.59895625865025 40.0 37.0 40.0 33.0 40.0 50-51 37.510845015595294 40.0 37.0 40.0 33.0 40.0 52-53 37.40342121535632 40.0 37.0 40.0 33.0 40.0 54-55 37.21565773798267 40.0 37.0 40.0 33.0 40.0 56-57 37.09870539518809 37.0 37.0 40.0 33.0 40.0 58-59 36.97376525478616 37.0 37.0 40.0 33.0 40.0 60-61 36.83324606308506 37.0 37.0 40.0 33.0 40.0 62-63 36.669578301209285 37.0 37.0 40.0 33.0 40.0 64-65 36.47932458102788 37.0 37.0 40.0 33.0 40.0 66-67 36.270607838055675 37.0 37.0 40.0 33.0 40.0 68-69 36.056376539080745 37.0 37.0 40.0 33.0 40.0 70-71 35.7967546308616 37.0 35.0 37.0 33.0 40.0 72-73 35.59792329616868 37.0 33.0 37.0 33.0 40.0 74-75 35.40611398462605 37.0 33.0 37.0 33.0 40.0 76-77 33.58327758635136 35.0 33.0 37.0 27.0 37.0 78-79 34.897687233352336 37.0 33.0 37.0 33.0 37.0 80-81 34.958577093781145 37.0 33.0 37.0 33.0 37.0 82-83 34.826266127224336 37.0 33.0 37.0 33.0 37.0 84-85 34.681142885239495 37.0 33.0 37.0 33.0 37.0 86-87 34.58093460130628 37.0 33.0 37.0 33.0 37.0 88-89 34.46037496866484 37.0 33.0 37.0 30.0 37.0 90-91 34.397077282030835 37.0 33.0 37.0 30.0 37.0 92-93 34.32923949463525 37.0 33.0 37.0 27.0 37.0 94-95 34.34822544028539 37.0 33.0 37.0 33.0 37.0 96-97 34.334462518557515 37.0 33.0 37.0 33.0 37.0 98-99 34.33374709571753 37.0 33.0 37.0 33.0 37.0 100 34.3144494998537 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 2.0 19 15.0 20 102.0 21 580.0 22 2308.0 23 6460.0 24 14579.0 25 28279.0 26 49080.0 27 77211.0 28 112294.0 29 156338.0 30 208512.0 31 275229.0 32 359925.0 33 476262.0 34 644942.0 35 921547.0 36 1571520.0 37 3532561.0 38 3776688.0 39 84241.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.303551699386176 20.488270444721042 14.420771796899112 23.787406058993668 2 14.647991377283212 21.123306281098873 41.66827388574185 22.560428455876064 3 18.014776549931067 26.375782238673494 30.632069663433693 24.97737154796175 4 12.404984471297187 18.366630575591397 38.690546078892766 30.537838874218647 5 13.420151892772846 37.76082075826699 35.52650708092481 13.292520268035357 6 29.82025113469688 37.88605733356783 18.787999569709186 13.505691962026104 7 26.25847692873607 32.73281611776747 23.14452384955909 17.864183103937368 8 24.358947255785907 36.78917958323319 21.102637389585677 17.74923577139523 9 25.4277208375926 16.873369133392895 21.169742173873026 36.52916785514148 10-11 24.131768915787934 26.7803020385316 28.817272429076013 20.27065661660446 12-13 25.0312381224497 24.327154117299386 28.884222442020075 21.75738531823084 14-15 22.161329935355898 25.67674859337435 26.508935952922684 25.652985518347066 16-17 21.73900670283533 28.877205969162862 27.141669558576876 22.242117769424937 18-19 21.76324101878934 27.87389878390162 28.94496122997305 21.417898967335997 20-21 22.543611601095094 27.023924314119885 28.886880301264288 21.545583783520726 22-23 22.3056758360288 27.11106868043936 28.68914948332887 21.894106000202974 24-25 22.10703559787637 27.296895682992446 28.83197810487618 21.76409061425501 26-27 22.080648520586816 27.40441659832598 28.819060706056938 21.695874175030266 28-29 22.00308856204422 27.292083184022992 28.89968603621175 21.805142217721038 30-31 22.29268530326633 27.19019801733379 28.729951300962785 21.78716537843709 32-33 22.157535069459275 27.18205832670722 28.73563513802331 21.924771465810203 34-35 22.0855333019982 27.393004074098553 28.81759580892404 21.703866814979207 36-37 22.27855055077967 27.27935949311145 28.568133541929917 21.873956414178966 38-39 22.033619511664483 27.369469236175686 28.667596462016103 21.92931479014373 40-41 22.169873242534468 27.248150788200793 28.63733482934378 21.944641139920957 42-43 22.217757224949665 27.286607316804595 28.431438984192916 22.06419647405283 44-45 22.08469096203152 27.48282112684383 28.256404696293313 22.176083214831333 46-47 22.36188245359787 27.375574836212994 27.881766085703873 22.380776624485254 48-49 22.324596628297765 27.533907423510335 27.825194947242693 22.31630100094921 50-51 22.273354091085633 27.648731875471217 27.812390134350238 22.26552389909291 52-53 22.40842225373906 27.629082805651016 27.80344640252293 22.159048538086985 54-55 22.404369865365954 27.59282425302346 27.61792633366872 22.38487954794187 56-57 22.47053699480796 27.827985795161325 27.428872224436557 22.272604985594157 58-59 22.25162910736475 27.885319088729027 27.707047491944774 22.156004311961446 60-61 22.47982125588224 27.95695670473437 27.4483443153937 22.11487772398969 62-63 22.328253254665857 28.08794822131967 27.487286215731444 22.096512308283028 64-65 22.43225941529062 27.889192800348923 27.403146264842842 22.27540151951762 66-67 22.46621483238965 27.832068710498824 27.341892887638746 22.359823569472784 68-69 22.4043716590837 27.77586902845809 27.434703530998693 22.385055781459517 70-71 22.446909835312233 27.63992652905573 27.451873285026384 22.46129035060565 72-73 22.48060233362632 27.688894298693516 27.377424080574066 22.453079287106103 74-75 22.355288568709337 27.781371307748536 27.3618056650971 22.50153445844503 76-77 22.463440797125514 27.765165052028777 27.296780166225965 22.474613984619744 78-79 22.37927703963261 27.72741269413285 27.328597824343465 22.564712441891082 80-81 22.371830835022525 27.773021287936295 27.356383224431998 22.498764652609182 82-83 22.478082590689546 27.670535762840753 27.44384639571874 22.40753525075096 84-85 22.510609257188307 27.669443499010214 27.368077056516388 22.451870187285085 86-87 22.421198791710324 27.74040591943644 27.379497937504567 22.458897351348668 88-89 22.48437388573622 27.681971807113865 27.33186210182571 22.501792205324207 90-91 22.481586989599073 27.7515352019228 27.337457498786716 22.429420309691412 92-93 22.5128815323494 27.725188114815335 27.396380391358456 22.36554996147681 94-95 22.30447901443956 27.82541490812649 27.425356885069135 22.444749192364817 96-97 22.415707942002097 27.94300115727093 27.45642121467462 22.184869686052348 98-99 23.537361248371923 29.828187694016865 27.65872430217308 18.97572675543813 100 22.42368346361677 30.870822808478906 21.52242738398998 25.183066343914344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4097.0 1 3339.0 2 3795.5 3 5253.5 4 6862.0 5 10825.5 6 14300.0 7 17093.5 8 19172.5 9 19050.0 10 17305.5 11 15442.5 12 16572.5 13 21624.0 14 33552.0 15 50351.0 16 64243.5 17 72164.5 18 73522.5 19 69272.5 20 62179.5 21 55177.5 22 51533.5 23 53304.5 24 60618.5 25 74186.0 26 92434.0 27 112557.5 28 135302.5 29 161267.0 30 185785.5 31 210648.5 32 239198.0 33 267167.0 34 294456.0 35 320793.0 36 347587.5 37 372919.5 38 393792.5 39 411832.0 40 428697.5 41 442505.5 42 450579.0 43 460635.0 44 471264.5 45 482420.0 46 497292.0 47 512842.0 48 518813.0 49 512150.5 50 504437.5 51 493870.0 52 469259.5 53 434808.5 54 404153.5 55 375400.5 56 344143.0 57 310159.5 58 274789.0 59 236777.5 60 196469.0 61 162794.5 62 132059.5 63 103338.0 64 79876.0 65 58763.0 66 44081.5 67 33419.0 68 23657.0 69 16542.0 70 11842.5 71 8663.5 72 6151.0 73 4388.5 74 3297.0 75 2370.5 76 1554.0 77 930.5 78 625.0 79 455.0 80 323.5 81 220.0 82 169.0 83 114.5 84 70.0 85 49.5 86 34.5 87 23.0 88 14.5 89 9.5 90 8.0 91 8.0 92 7.5 93 5.0 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0013009530456774372 5 0.0 6 1.382262611032277E-4 7 0.0 8 0.0 9 0.0 10-11 0.004146787833096831 12-13 1.2196434803225974E-5 14-15 0.0014920305242613109 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 200.0 20-21 911.0 22-23 1784.0 24-25 3318.0 26-27 4980.0 28-29 8461.0 30-31 17555.0 32-33 22203.0 34-35 31241.0 36-37 42598.0 38-39 51462.0 40-41 55674.0 42-43 70683.0 44-45 84616.0 46-47 82715.0 48-49 73504.0 50-51 64654.0 52-53 64055.0 54-55 73192.0 56-57 79036.0 58-59 79174.0 60-61 81733.0 62-63 83136.0 64-65 89342.0 66-67 92054.0 68-69 84168.0 70-71 83447.0 72-73 81047.0 74-75 85389.0 76-77 82595.0 78-79 90239.0 80-81 93189.0 82-83 92533.0 84-85 94566.0 86-87 101635.0 88-89 109627.0 90-91 116849.0 92-93 124466.0 94-95 156003.0 96-97 427168.0 98-99 786241.0 100-101 8431233.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.36127826752558 #Duplication Level Percentage of deduplicated Percentage of total 1 87.60910975754823 72.1559826751162 2 8.47183434443785 13.955022117572518 3 2.177728006292098 5.380813869516215 4 0.8095817384886631 2.6671274737588764 5 0.37381303722117737 1.539385978930114 6 0.19811863587461467 0.9790382459551031 7 0.11060179331283389 0.6376513553147963 8 0.061965982394487557 0.40828780152903854 9 0.043980450721107255 0.32600575261550796 >10 0.14017744681665736 1.7258018292289523 >50 0.0025939524843995388 0.14550254477751776 >100 4.6024550709207706E-4 0.059968993960525234 >500 3.4608900827137316E-5 0.019411361724683843 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.130956535483982E-6 2 0.0 1.6261913070967964E-5 0.0 0.0 8.130956535483982E-6 3 0.0 1.6261913070967964E-5 0.0 0.0 8.130956535483982E-6 4 0.0 4.065478267741991E-5 0.0 0.0 8.130956535483982E-6 5 0.0 6.504765228387186E-5 0.0 0.0 8.130956535483982E-6 6 4.065478267741991E-5 6.504765228387186E-5 0.0 0.0 8.130956535483982E-6 7 4.065478267741991E-5 6.504765228387186E-5 0.0 8.130956535483982E-6 8.130956535483982E-6 8 4.065478267741991E-5 7.317860881935583E-5 0.0 8.130956535483982E-6 8.130956535483982E-6 9 4.065478267741991E-5 1.382262611032277E-4 0.0 1.6261913070967964E-5 8.130956535483982E-6 10-11 4.065478267741991E-5 1.382262611032277E-4 0.0 1.6261913070967964E-5 8.130956535483982E-6 12-13 4.065478267741991E-5 1.4635721763871167E-4 0.0 2.0327391338709956E-5 1.6261913070967964E-5 14-15 4.065478267741991E-5 2.3173226126129348E-4 0.0 4.065478267741991E-5 1.6261913070967964E-5 16-17 6.911313055161385E-5 2.4392869606451947E-4 0.0 4.8785739212903896E-5 1.6261913070967964E-5 18-19 7.317860881935583E-5 2.561251308677454E-4 0.0 6.098217401612987E-5 2.4392869606451948E-5 20-21 7.317860881935583E-5 2.7238704393871336E-4 0.0 7.317860881935585E-5 2.4392869606451948E-5 22-23 7.317860881935583E-5 3.333692179548433E-4 0.0 8.130956535483982E-5 4.065478267741991E-5 24-25 7.317860881935583E-5 3.6182756582903717E-4 0.0 1.0163695669354978E-4 5.2851217480645884E-5 26-27 7.317860881935583E-5 3.658930440967792E-4 0.0 1.341607828354857E-4 6.098217401612987E-5 28-29 7.317860881935583E-5 3.699585223645212E-4 0.0 2.3173226126129348E-4 6.504765228387186E-5 30-31 7.317860881935583E-5 4.268752181129091E-4 0.0 6.342146097677506E-4 6.504765228387186E-5 32-33 7.317860881935583E-5 4.3907165291613503E-4 0.0 0.0016302567853645387 8.130956535483982E-5 34-35 7.724408708709784E-5 5.041193052000069E-4 0.0 0.0028946205266322978 8.94405218903238E-5 36-37 8.537504362258181E-5 5.732324357516207E-4 0.0 0.0046143178338871604 8.94405218903238E-5 38-39 8.94405218903238E-5 6.016907836258147E-4 0.0 0.007569920534535588 8.94405218903238E-5 40-41 8.94405218903238E-5 6.667384359096865E-4 0.0 0.010492999409042079 9.757147842580779E-5 42-43 8.94405218903238E-5 6.951967837838804E-4 0.0 0.013078643587325984 1.0570243496129177E-4 44-45 1.0976791322903377E-4 7.846373056742043E-4 0.0 0.016461121506087324 1.1789886976451775E-4 46-47 1.2196434803225974E-4 8.618813927613021E-4 0.0 0.020063135251306728 1.300953045677437E-4 48-49 1.2196434803225974E-4 8.70012349296786E-4 0.0 0.023657018039990645 1.300953045677437E-4 50-51 1.300953045677437E-4 0.0010082386104000138 0.0 0.026860614914971336 1.300953045677437E-4 52-53 1.300953045677437E-4 0.0010123040886677558 0.0 0.030344729790426222 1.6261913070967965E-4 54-55 1.300953045677437E-4 0.0010692207844161437 0.0 0.03388982683989723 1.788810437806476E-4 56-57 1.341607828354857E-4 0.0011220720018967896 0.0 0.03829273980386182 1.788810437806476E-4 58-59 1.382262611032277E-4 0.0011220720018967896 0.0 0.04257368841979413 1.788810437806476E-4 60-61 1.382262611032277E-4 0.0011220720018967896 0.0 0.046484678513361924 1.788810437806476E-4 62-63 1.5448817417419567E-4 0.0011383339149677574 0.0 0.050468847215749076 1.788810437806476E-4 64-65 1.5448817417419567E-4 0.0012521673064645332 0.0 0.054497736179081394 1.829465220483896E-4 66-67 1.6261913070967965E-4 0.0012887566108742113 0.0 0.058827470534226614 1.9514295685161558E-4 68-69 1.6261913070967965E-4 0.001317214958748405 0.0 0.06325884184606538 1.9514295685161558E-4 70-71 1.7075008724516363E-4 0.0013294113935516311 0.0 0.06732025463553963 1.9514295685161558E-4 72-73 1.8701200031613158E-4 0.001337542350087115 0.0 0.0703571669015429 2.1140486992258354E-4 74-75 1.8701200031613158E-4 0.0013538042631580831 0.0 0.07301598968864616 2.1140486992258354E-4 76-77 1.910774785838736E-4 0.0014025900023709869 0.0 0.07547560404063006 2.1140486992258354E-4 78-79 1.9514295685161558E-4 0.0014351138285129228 0.0 0.07739450978300427 2.1140486992258354E-4 80-81 2.0327391338709956E-4 0.0014473102633161487 0.0 0.0780246589145043 2.1140486992258354E-4 82-83 2.1140486992258354E-4 0.0014554412198516328 0.0 0.07847186152395591 2.236013047258095E-4 84-85 2.1547034819032553E-4 0.0014635721763871167 0.0 0.07865074256773656 2.276667829935515E-4 86-87 2.1953582645806751E-4 0.0015042269590645368 0.0 0.07869952830694946 2.276667829935515E-4 88 2.1953582645806751E-4 0.0015855365244193764 0.0 0.07870765926348494 2.276667829935515E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16005 0.0 51.09287 1 GTATCAA 28995 0.0 38.27742 1 CTTATAC 8325 0.0 32.27316 1 TCAACGC 35730 0.0 30.601116 4 ATCAACG 35850 0.0 30.522406 3 CAACGCA 36735 0.0 29.75332 5 TATCAAC 37140 0.0 29.684303 2 AACGCAG 37445 0.0 29.212347 6 ACGCAGA 42685 0.0 25.575401 7 CGCAGAG 44655 0.0 24.456938 8 TATACAC 13140 0.0 24.113626 3 GTACATG 36370 0.0 21.720165 1 GCAGAGT 50945 0.0 21.284132 9 TTATACA 13545 0.0 21.245628 2 TACATGG 36425 0.0 20.996233 2 GAGTACT 30805 0.0 20.42359 12-13 ACATGGG 36475 0.0 20.301062 3 GTGGTAT 7905 0.0 19.876583 1 TGGTATC 7545 0.0 19.156672 2 AGAGTAC 45535 0.0 19.151207 10-11 >>END_MODULE