##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139218_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11525520 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55568043784575 33.0 33.0 33.0 33.0 33.0 2 32.572903088103615 33.0 33.0 33.0 33.0 33.0 3 32.56739756644386 33.0 33.0 33.0 33.0 33.0 4 36.4801155175645 37.0 37.0 37.0 37.0 37.0 5 36.516894682409124 37.0 37.0 37.0 37.0 37.0 6 36.512121014930344 37.0 37.0 37.0 37.0 37.0 7 36.4941453400801 37.0 37.0 37.0 37.0 37.0 8 36.48787143660329 37.0 37.0 37.0 37.0 37.0 9 36.50556799172619 37.0 37.0 37.0 37.0 37.0 10-11 36.46036695090547 37.0 37.0 37.0 37.0 37.0 12-13 36.4429823122948 37.0 37.0 37.0 37.0 37.0 14-15 38.43131845678113 40.0 37.0 40.0 37.0 40.0 16-17 38.40223642837807 40.0 37.0 40.0 37.0 40.0 18-19 38.432748587482386 40.0 37.0 40.0 37.0 40.0 20-21 38.430049843408554 40.0 37.0 40.0 37.0 40.0 22-23 38.43020716585872 40.0 37.0 40.0 37.0 40.0 24-25 38.406237949533136 40.0 37.0 40.0 37.0 40.0 26-27 38.290340662075245 40.0 37.0 40.0 37.0 40.0 28-29 38.23588398963405 40.0 37.0 40.0 37.0 40.0 30-31 38.15901396324173 40.0 37.0 40.0 37.0 40.0 32-33 38.08335676246172 40.0 37.0 40.0 33.0 40.0 34-35 38.064564680950724 40.0 37.0 40.0 33.0 40.0 36-37 38.00642966083471 40.0 37.0 40.0 33.0 40.0 38-39 37.96098236832475 40.0 37.0 40.0 33.0 40.0 40-41 37.92476954592698 40.0 37.0 40.0 33.0 40.0 42-43 37.86492433506811 40.0 37.0 40.0 33.0 40.0 44-45 37.793457995217864 40.0 37.0 40.0 33.0 40.0 46-47 37.749855787737644 40.0 37.0 40.0 33.0 40.0 48-49 37.72734217771132 40.0 37.0 40.0 33.0 40.0 50-51 37.65442534520069 40.0 37.0 40.0 33.0 40.0 52-53 37.55113783567472 40.0 37.0 40.0 33.0 40.0 54-55 37.374998107444696 40.0 37.0 40.0 33.0 40.0 56-57 37.266123271069446 40.0 37.0 40.0 33.0 40.0 58-59 37.15254003561003 37.0 37.0 40.0 33.0 40.0 60-61 37.0175170028784 37.0 37.0 40.0 33.0 40.0 62-63 36.8566756764602 37.0 37.0 40.0 33.0 40.0 64-65 36.66731412579732 37.0 37.0 40.0 33.0 40.0 66-67 36.46010563362479 37.0 37.0 40.0 33.0 40.0 68-69 36.24402477403612 37.0 37.0 40.0 33.0 40.0 70-71 35.983654975304034 37.0 37.0 38.5 33.0 40.0 72-73 35.78052525520011 37.0 33.0 37.0 33.0 40.0 74-75 35.58164236965456 37.0 33.0 37.0 33.0 40.0 76-77 33.76848301150581 35.0 33.0 37.0 27.0 37.0 78-79 35.05067369218179 37.0 33.0 37.0 33.0 37.0 80-81 35.09999002805117 37.0 33.0 37.0 33.0 37.0 82-83 34.962311958232085 37.0 33.0 37.0 33.0 37.0 84-85 34.81342035829486 37.0 33.0 37.0 33.0 37.0 86-87 34.709350392860614 37.0 33.0 37.0 33.0 37.0 88-89 34.585222665170406 37.0 33.0 37.0 33.0 37.0 90-91 34.520158458185946 37.0 33.0 37.0 33.0 37.0 92-93 34.457053125348196 37.0 33.0 37.0 33.0 37.0 94-95 34.47091336406032 37.0 33.0 37.0 33.0 37.0 96-97 34.45300944246035 37.0 33.0 37.0 33.0 37.0 98-99 34.46470669286222 37.0 33.0 37.0 33.0 37.0 100 34.474443544998216 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 26.0 20 72.0 21 485.0 22 1866.0 23 5247.0 24 11797.0 25 23928.0 26 41358.0 27 65686.0 28 96801.0 29 135447.0 30 182255.0 31 240853.0 32 316767.0 33 421801.0 34 573492.0 35 821070.0 36 1406160.0 37 3290594.0 38 3810435.0 39 79375.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.691420430488165 20.25175436769881 14.417076192657685 23.639749009155338 2 14.490296316348417 21.29658358147832 41.712443343120306 22.500676759052954 3 17.912172292443206 26.512365602593203 30.65166690960581 24.92379519535778 4 12.264515683452439 18.375637591975146 39.47774115527137 29.88210556930105 5 13.219429578882341 37.83030179983202 35.732201236907315 13.218067384378319 6 29.314478687530077 38.34967419217863 19.08755242503019 13.248294695261102 7 25.914761329640655 33.01589863190554 23.48188194545669 17.587458092997103 8 24.10601864384427 36.729683346174404 21.40242696208067 17.76187104790066 9 25.396728303798877 16.957308650715976 21.46510526206193 36.18085778342322 10-11 23.81673893818824 26.940801849466066 29.20030497031858 20.04215424202711 12-13 24.845746602581613 24.596035439975093 29.25310675895118 21.30511119849211 14-15 21.975068291772317 25.918800738909447 27.028049917904973 25.07808105141326 16-17 21.388314800546958 28.982189089949955 27.69379169009294 21.935704419410143 18-19 21.370428405833316 28.066811736043146 29.582062241009517 20.98069761711402 20-21 22.20982327817148 27.231963939810022 29.541213040149067 21.01699974186943 22-23 21.859740958438593 27.179891901507368 29.391036480800746 21.56933065925329 24-25 21.68876451166462 27.323684609307914 29.42329233155047 21.564258547476996 26-27 21.654267459961225 27.509387309312817 29.30226137568251 21.53408385504345 28-29 21.58075971184455 27.579917468489377 29.341250090818882 21.49807272884719 30-31 21.900377255303933 27.400081364104278 29.21725793407578 21.48228344651601 32-33 21.678779990615205 27.543040910185844 29.13599319393525 21.642185905263702 34-35 21.82387514394217 27.598841742473052 29.115804703134295 21.461478410450482 36-37 21.799735133445242 27.582023071395085 29.011858722580104 21.60638307257957 38-39 21.638844948385735 27.729681917668575 29.067428990477755 21.564044143467935 40-41 21.93587226480726 27.58262483587525 28.93156327613209 21.5499396231854 42-43 21.844681588755613 27.703721834137635 28.674078638381406 21.777517938725346 44-45 21.966540694484017 27.7985435413297 28.456940904671686 21.777974859514597 46-47 21.98806954137443 27.816099204514156 28.214243621075042 21.981587633036373 48-49 21.902951245038977 28.0058919926949 28.11742893069798 21.973727831568144 50-51 21.953408313931853 28.099287626614505 27.999084199548214 21.94821985990543 52-53 22.146648011688423 27.985708714882595 27.862048409686647 22.005594863742335 54-55 22.1198909710082 27.911872020514544 27.897177203938323 22.071059804538933 56-57 22.112960820204346 28.044966157525902 27.849507997074614 21.992565025195134 58-59 22.07875345800308 28.090232040487845 27.87188814152493 21.959126359984147 60-61 22.146552596844288 28.023644076610378 27.89617882951974 21.933624497025594 62-63 22.075314284145296 28.10751335853716 27.843682017652082 21.973490339665457 64-65 22.07334786968356 28.07131537959315 27.77097446908739 22.0843622816359 66-67 22.13382654860548 28.070512283456427 27.67716472271136 22.118496445226732 68-69 22.073657112147675 28.076086624013307 27.7770759523645 22.073180311474523 70-71 22.08640076887026 27.909607371102602 27.804687983389297 22.19930387663784 72-73 22.16319442467664 27.931720545106963 27.718122991946426 22.18696203826997 74-75 22.017442183078185 28.073132780082986 27.688049499670147 22.22137553716868 76-77 22.129957347062067 27.99474237690496 27.645513291366854 22.229786984666124 78-79 22.09471190943107 28.007264631273294 27.63766075550015 22.260362703795483 80-81 22.10751880728897 28.03493177022256 27.648746766931488 22.208802655556987 82-83 22.111609808240026 28.03194443202669 27.704046102662065 22.152399657071218 84-85 22.24408123585314 28.00870636025333 27.604013785754972 22.143198618138555 86-87 22.10369868008422 28.012677377027146 27.69508093413156 22.188543008757073 88-89 22.13511691527399 27.997834767203027 27.642596158620243 22.224452158902736 90-91 22.13959484501982 28.048917213429338 27.661078690814335 22.15040925073651 92-93 22.19091839513244 28.01389449655663 27.67307349226768 22.12211361604325 94-95 22.05870830155062 28.070334315667296 27.69060606625785 22.180351316524234 96-97 22.11164023425443 28.198941641268867 27.747309505171593 21.942108619305113 98-99 22.323852086454597 28.928697295319623 26.84868406754856 21.898766550677216 100 20.421762148290117 28.65040500394625 27.98119076054335 22.946642087220283 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3232.0 1 2759.5 2 3524.0 3 5047.0 4 6887.5 5 11186.5 6 14845.0 7 17511.0 8 19509.0 9 19371.0 10 17491.5 11 15496.0 12 16558.5 13 21843.0 14 33975.5 15 50464.0 16 63908.5 17 71870.0 18 73195.0 19 68715.5 20 61778.5 21 54651.0 22 50056.5 23 51684.5 24 59244.5 25 72547.0 26 91465.5 27 112142.0 28 135086.0 29 160550.0 30 185362.0 31 210970.0 32 237839.0 33 264151.0 34 289814.5 35 313370.0 36 338461.0 37 361158.0 38 378581.5 39 393699.0 40 407548.5 41 420505.0 42 429106.0 43 436849.0 44 443715.0 45 449127.5 46 450925.0 47 449385.0 48 448966.5 49 443747.5 50 432879.5 51 418081.0 52 399339.0 53 379383.0 54 357386.0 55 330855.0 56 303055.5 57 271885.5 58 238968.0 59 206094.5 60 170002.5 61 136079.0 62 106265.0 63 80400.0 64 58889.0 65 42571.0 66 30952.0 67 22846.5 68 16867.0 69 11898.0 70 8183.0 71 5598.5 72 3713.0 73 2413.0 74 1559.0 75 1031.0 76 699.5 77 477.5 78 330.5 79 235.5 80 168.0 81 124.0 82 97.0 83 68.5 84 47.5 85 34.5 86 25.5 87 18.0 88 13.0 89 11.0 90 11.0 91 10.5 92 7.0 93 4.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.001075873366234235 5 0.0 6 1.2146957360709104E-4 7 0.0 8 0.0 9 0.0 10-11 0.004025848725263589 12-13 3.470559245916887E-5 14-15 0.001357856304964982 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 220.0 20-21 741.0 22-23 1656.0 24-25 3615.0 26-27 4522.0 28-29 6758.0 30-31 13278.0 32-33 16591.0 34-35 23260.0 36-37 29605.0 38-39 36655.0 40-41 42589.0 42-43 54284.0 44-45 67016.0 46-47 64559.0 48-49 55833.0 50-51 48148.0 52-53 46784.0 54-55 50524.0 56-57 53370.0 58-59 55139.0 60-61 55985.0 62-63 57028.0 64-65 61932.0 66-67 66819.0 68-69 69494.0 70-71 70620.0 72-73 70037.0 74-75 74267.0 76-77 72626.0 78-79 80564.0 80-81 83885.0 82-83 83893.0 84-85 86534.0 86-87 93360.0 88-89 101275.0 90-91 108483.0 92-93 116915.0 94-95 145589.0 96-97 407431.0 98-99 55451.0 100-101 8888185.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.59175737366724 #Duplication Level Percentage of deduplicated Percentage of total 1 88.1431408219004 72.79896900915382 2 8.083701086535287 13.352941576407455 3 2.077156771749964 5.1466808435832885 4 0.7742244438399015 2.557782296735504 5 0.360848474374649 1.4901554822104495 6 0.1813117435839439 0.8984913321048997 7 0.11041945914098283 0.6383816025092532 8 0.06692752000203836 0.44221291949036906 9 0.0451819108644183 0.33584880778134263 >10 0.15207944236466014 1.9575478115406153 >50 0.003988470804702735 0.21408044868751808 >100 9.245145731895299E-4 0.11363130638336542 >500 7.62741549936523E-5 0.03675792264310648 >1k 1.9066110839124788E-5 0.01651864076908179 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.7352796229584435E-5 0.0 0.0 0.0 3 0.0 1.7352796229584435E-5 0.0 0.0 0.0 4 0.0 6.0734786803545525E-5 0.0 8.676398114792217E-6 0.0 5 0.0 6.941118491833774E-5 0.0 8.676398114792217E-6 0.0 6 5.2058388688753304E-5 6.941118491833774E-5 0.0 8.676398114792217E-6 0.0 7 5.2058388688753304E-5 6.941118491833774E-5 0.0 8.676398114792217E-6 2.6029194344376652E-5 8 5.2058388688753304E-5 8.676398114792218E-5 0.0 1.7352796229584435E-5 3.470559245916887E-5 9 7.808758303312995E-5 1.474987679514677E-4 0.0 2.6029194344376652E-5 3.470559245916887E-5 10-11 7.808758303312995E-5 1.474987679514677E-4 0.0 3.470559245916887E-5 3.470559245916887E-5 12-13 7.808758303312995E-5 1.474987679514677E-4 0.0 3.470559245916887E-5 3.470559245916887E-5 14-15 8.676398114792218E-5 1.99557156640221E-4 0.0 6.0734786803545525E-5 3.470559245916887E-5 16-17 1.3448417077927937E-4 1.99557156640221E-4 0.0 8.676398114792218E-5 3.470559245916887E-5 18-19 1.3882236983667548E-4 2.2124815192720157E-4 0.0 8.676398114792218E-5 3.470559245916887E-5 20-21 1.4316056889407159E-4 2.429391472141821E-4 0.0 9.110218020531829E-5 4.338199057396109E-5 22-23 1.474987679514677E-4 2.6463014250116264E-4 0.0 1.0845497643490272E-4 4.338199057396109E-5 24-25 1.474987679514677E-4 3.166885311899159E-4 0.0 1.1713137454969494E-4 4.338199057396109E-5 26-27 1.474987679514677E-4 3.297031283621043E-4 0.0 1.3014597172188326E-4 4.338199057396109E-5 28-29 1.474987679514677E-4 3.297031283621043E-4 0.0 2.1257175381240935E-4 4.338199057396109E-5 30-31 1.474987679514677E-4 3.7308511893606537E-4 0.0 6.203624652076435E-4 4.338199057396109E-5 32-33 1.474987679514677E-4 3.7308511893606537E-4 0.0 0.0013752091011945665 4.338199057396109E-5 34-35 1.561751660662599E-4 4.077907113952342E-4 0.0 0.002381671282510464 4.338199057396109E-5 36-37 1.7352796229584436E-4 4.468345029117992E-4 0.0 0.0036787928006719005 4.338199057396109E-5 38-39 1.7352796229584436E-4 4.511727019691953E-4 0.0 0.00541841062268774 5.2058388688753304E-5 40-41 1.908807585254288E-4 4.5984910008398756E-4 0.0 0.007322880008884631 5.2058388688753304E-5 42-43 1.908807585254288E-4 4.815400953709681E-4 0.0 0.009839035462174375 5.2058388688753304E-5 44-45 1.908807585254288E-4 5.335984840597214E-4 0.0 0.012355190915464118 5.2058388688753304E-5 46-47 1.908807585254288E-4 5.639658774614941E-4 0.0 0.01514031471031242 5.2058388688753304E-5 48-49 1.908807585254288E-4 5.683040765188902E-4 0.0 0.017864703718357175 5.2058388688753304E-5 50-51 1.99557156640221E-4 6.160242661502474E-4 0.0 0.02069320950377944 5.2058388688753304E-5 52-53 1.99557156640221E-4 6.160242661502474E-4 0.0 0.02320068855895439 5.2058388688753304E-5 54-55 1.99557156640221E-4 6.247006642650396E-4 0.0 0.025925077566999147 5.2058388688753304E-5 56-57 1.99557156640221E-4 6.594062567242086E-4 0.0 0.029261152642136752 5.2058388688753304E-5 58-59 1.99557156640221E-4 6.637444557816047E-4 0.0 0.03242369975497852 5.2058388688753304E-5 60-61 2.0823355475501322E-4 6.724208538963969E-4 0.0 0.03584220061220665 5.2058388688753304E-5 62-63 2.429391472141821E-4 7.027882472981697E-4 0.0 0.03905246791467977 5.2058388688753304E-5 64-65 2.429391472141821E-4 8.069050246756762E-4 0.0 0.042657511331375936 5.2058388688753304E-5 66-67 2.6029194344376653E-4 8.112432237330723E-4 0.0 0.04653152308963066 5.2058388688753304E-5 68-69 2.6896834155855874E-4 8.502870152496373E-4 0.0 0.05023200688558954 6.0734786803545525E-5 70-71 2.8198293873074706E-4 8.8065440865141E-4 0.0 0.053845726700400505 6.0734786803545525E-5 72-73 3.2102673024731203E-4 9.023454039383906E-4 0.0 0.05666555608770797 6.0734786803545525E-5 74-75 3.2102673024731203E-4 9.283745982827673E-4 0.0 0.05901685997681666 6.507298586094163E-5 76-77 3.2970312836210424E-4 0.0010108003803732933 0.0 0.0613247818753514 6.941118491833774E-5 78-79 3.5139412364908483E-4 0.0010498441718898583 0.0 0.06303837050302286 7.374938397573385E-5 80-81 3.5573232270648094E-4 0.0010498441718898583 0.0 0.0636674093663453 8.242578209052606E-5 82-83 3.5573232270648094E-4 0.0010585205700046505 0.0 0.06404917088339615 8.676398114792218E-5 84-85 3.5573232270648094E-4 0.001071535167176839 0.0 0.06422269884569198 9.110218020531829E-5 86-87 3.5573232270648094E-4 0.0011019025605786116 0.0 0.06431380102589732 1.0411677737750661E-4 88 3.6440872082127315E-4 0.0011713137454969493 0.0 0.0643181392249547 1.1279317549229882E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15810 0.0 51.396564 1 GTATCAA 28895 0.0 37.704277 1 TCAACGC 34805 0.0 30.555105 4 ATCAACG 35030 0.0 30.383493 3 CAACGCA 35865 0.0 29.666393 5 TATCAAC 36685 0.0 29.325262 2 AACGCAG 36460 0.0 29.254822 6 ACGCAGA 41855 0.0 25.47342 7 CGCAGAG 42285 0.0 25.193848 8 GTACATG 32795 0.0 21.792948 1 GTGGTAT 7980 0.0 21.547768 1 GCAGAGT 49635 0.0 21.294514 9 TACATGG 32805 0.0 21.127743 2 TGGTATC 7695 0.0 20.684221 2 ACATGGG 33300 0.0 20.257591 3 GAGTACT 31740 0.0 20.13536 12-13 CAGAGTA 48045 0.0 19.245718 10-11 AGAGTAC 44900 0.0 19.16979 10-11 CATGGGG 23940 0.0 18.32513 4 GTACTTT 35180 0.0 18.129105 14-15 >>END_MODULE