##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139215_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10059668 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6009658569249 33.0 33.0 33.0 33.0 33.0 2 32.605534099137266 33.0 33.0 33.0 33.0 33.0 3 32.59998988038174 33.0 33.0 33.0 33.0 33.0 4 36.50574849985109 37.0 37.0 37.0 37.0 37.0 5 36.53134457320063 37.0 37.0 37.0 37.0 37.0 6 36.52571446691879 37.0 37.0 37.0 37.0 37.0 7 36.484218763482055 37.0 37.0 37.0 37.0 37.0 8 36.48596524259051 37.0 37.0 37.0 37.0 37.0 9 36.5288506539182 37.0 37.0 37.0 37.0 37.0 10-11 36.45097810384995 37.0 37.0 37.0 37.0 37.0 12-13 36.44568513593093 37.0 37.0 37.0 37.0 37.0 14-15 38.47507561879776 40.0 37.0 40.0 37.0 40.0 16-17 38.41415541745513 40.0 37.0 40.0 37.0 40.0 18-19 38.442090733014254 40.0 37.0 40.0 37.0 40.0 20-21 38.42561515928054 40.0 37.0 40.0 37.0 40.0 22-23 38.433624042047 40.0 37.0 40.0 37.0 40.0 24-25 38.41963467361197 40.0 37.0 40.0 37.0 40.0 26-27 38.311405868881195 40.0 37.0 40.0 37.0 40.0 28-29 38.23950432292314 40.0 37.0 40.0 37.0 40.0 30-31 38.171662863722574 40.0 37.0 40.0 37.0 40.0 32-33 38.09446657068317 40.0 37.0 40.0 33.0 40.0 34-35 38.04998868792423 40.0 37.0 40.0 33.0 40.0 36-37 37.982876438112356 40.0 37.0 40.0 33.0 40.0 38-39 37.919564255678466 40.0 37.0 40.0 33.0 40.0 40-41 37.87392283109665 40.0 37.0 40.0 33.0 40.0 42-43 37.810302344535486 40.0 37.0 40.0 33.0 40.0 44-45 37.73316464446665 40.0 37.0 40.0 33.0 40.0 46-47 37.67375661980684 40.0 37.0 40.0 33.0 40.0 48-49 37.63017765438548 40.0 37.0 40.0 33.0 40.0 50-51 37.536000762786344 40.0 37.0 40.0 33.0 40.0 52-53 37.420163609687364 40.0 37.0 40.0 33.0 40.0 54-55 37.215585780144416 40.0 37.0 40.0 33.0 40.0 56-57 37.12441114491641 37.0 37.0 40.0 33.0 40.0 58-59 36.979250774146664 37.0 37.0 40.0 33.0 40.0 60-61 36.83232940939436 37.0 37.0 40.0 33.0 40.0 62-63 36.66507071946019 37.0 37.0 40.0 33.0 40.0 64-65 36.46772076988223 37.0 37.0 40.0 33.0 40.0 66-67 36.24955454061258 37.0 37.0 40.0 33.0 40.0 68-69 36.04849721452334 37.0 37.0 38.5 33.0 40.0 70-71 35.78381365017776 37.0 33.0 37.0 33.0 40.0 72-73 35.57775742221291 37.0 33.0 37.0 33.0 40.0 74-75 35.40501262956843 37.0 33.0 37.0 33.0 40.0 76-77 33.74054398026588 35.0 33.0 37.0 27.0 37.0 78-79 34.90468070329101 37.0 33.0 37.0 33.0 37.0 80-81 34.991177734301246 37.0 33.0 37.0 33.0 37.0 82-83 34.87769708102738 37.0 33.0 37.0 33.0 37.0 84-85 34.71344335448495 37.0 33.0 37.0 33.0 37.0 86-87 34.639879352574084 37.0 33.0 37.0 33.0 37.0 88-89 34.54677810580948 37.0 33.0 37.0 33.0 37.0 90-91 34.43869595203248 37.0 33.0 37.0 33.0 37.0 92-93 34.4002662832698 37.0 33.0 37.0 33.0 37.0 94-95 34.43178999970266 37.0 33.0 37.0 33.0 37.0 96-97 34.4397555503702 37.0 33.0 37.0 33.0 37.0 98-99 34.43987926750276 37.0 33.0 37.0 33.0 37.0 100 34.452571358656186 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 4.0 18 5.0 19 27.0 20 88.0 21 452.0 22 1624.0 23 4558.0 24 10914.0 25 21253.0 26 36816.0 27 58575.0 28 85318.0 29 118886.0 30 160148.0 31 210764.0 32 277583.0 33 369222.0 34 506334.0 35 739568.0 36 1327359.0 37 3051865.0 38 3015513.0 39 62791.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.553889452415326 19.637984076611673 14.191422619513885 23.616703851459114 2 15.087436285173625 20.91842394798715 41.21540591598053 22.778733850858696 3 18.48632579126866 26.071576119609514 29.997272275784848 25.44482581333698 4 12.550980807716517 18.008646010981675 38.01236780378836 31.42800537751345 5 13.727898375970259 37.43497300308519 34.934065418461124 13.90306320248342 6 30.283767327889144 37.24590815783849 18.54871690366961 13.921607610602754 7 26.932817265937604 32.48225488157263 22.615239389610075 17.96968846287969 8 25.175204589256822 36.04272029653464 20.43671818990448 18.345356924304063 9 26.101795804791966 16.411913395153796 20.804841670719153 36.68144912933508 10-11 24.85288471613515 26.56204549941655 27.884025219706142 20.70104456474216 12-13 25.711527031660193 24.257169745280834 28.117128529204795 21.91417469385418 14-15 22.71383190289132 25.192770431578115 26.32197545640851 25.771422209122058 16-17 22.017858839874236 28.46477637234151 26.768999732396736 22.748365055387517 18-19 22.02592570649449 27.251003711056864 28.92594467332322 21.79712590912543 20-21 23.18691061401393 26.25552141431711 28.92091059701483 21.636657374654135 22-23 22.894563394831902 26.3112585740989 28.6585808693484 22.135597161720803 24-25 22.522244943549058 26.4965054793787 28.948688477715134 22.03256109935711 26-27 22.373900496503357 26.572392021946477 28.925768303970052 22.127939177580114 28-29 22.380813668814444 26.587600226746716 28.882758889737243 22.148827214701594 30-31 22.70761202163096 26.376464672995237 28.74647567612685 22.169447629246957 32-33 22.641935872860024 26.40851690541452 28.63121034742807 22.31833687429739 34-35 22.720407731771694 26.558635572992355 28.576391053833994 22.144565641401957 36-37 22.755081020820416 26.511104073736636 28.386839277224134 22.346975628218814 38-39 22.439458656178466 26.804986016031545 28.488026179910214 22.267529147879774 40-41 22.67712637826803 26.58033675565179 28.425692319789608 22.316844546290575 42-43 22.53999832565384 26.757014466472434 28.052671565244058 22.650315642629664 44-45 22.52847134000624 26.89225861180928 27.863766794786994 22.71550325339749 46-47 22.78381422632571 26.858531313666166 27.526232780511094 22.831421679497026 48-49 22.929858450396445 27.153394916012356 27.19919991520773 22.71754671838347 50-51 22.888717470446355 27.16648608779826 27.182829212268683 22.7619672294867 52-53 23.146780873563824 27.129510205401946 27.062912508948543 22.660796412085684 54-55 23.18175090771946 27.06924257369004 26.944272165105637 22.80473435348486 56-57 23.166606884092293 27.370251540129114 26.708530476421117 22.754611099357476 58-59 22.906275498720348 27.31674163535852 27.033310209718138 22.743672656202992 60-61 23.026962760406466 27.322582961949788 26.870690439909282 22.77976383773446 62-63 23.0306794041758 27.351251617605993 26.958770874871295 22.659298103346913 64-65 23.136027405320522 27.19758897093475 26.882121170081085 22.784262453663644 66-67 23.20101936375955 27.275398529298123 26.6543059336844 22.86927617325793 68-69 23.12815791253922 27.211526694110134 26.771747794783927 22.888567598566716 70-71 23.116843058988245 27.060245847946923 26.78400656194434 23.038904531120494 72-73 23.103445000617384 27.138462177657292 26.656603008110746 23.101489813614577 74-75 22.99735740763754 27.13471066246208 26.696388020673194 23.171543909227186 76-77 23.100121290356192 27.168763524511807 26.60865048931945 23.122464695812546 78-79 22.963710278863 27.160323851902273 26.70728689508963 23.16867897414509 80-81 23.038359533703545 27.045242572199484 26.803219734235117 23.113178159861853 82-83 23.244685621847346 26.904593639984647 26.95655180952349 22.89416892864452 84-85 23.19955087340641 26.923959523294272 26.864446282094047 23.012043321205276 86-87 23.018200770423178 27.06949029501944 26.8146813940376 23.097627540519788 88-89 23.237157167966895 26.851137637048893 26.706080610567952 23.205624584416263 90-91 23.223899753009615 26.85794768519597 26.753777123648547 23.16437543814586 92-93 23.245567815229137 26.855970611240053 26.917888968603755 22.98057260492705 94-95 23.006013741937327 27.061610206531732 26.942185183330103 22.990190868200834 96-97 23.025083967275016 27.078882405681536 26.99711838113522 22.89891524590823 98-99 23.33068645182215 27.846892007889295 26.049178290000146 22.77324325028841 100 21.21580731057855 27.71844379190216 27.308973508888258 23.75677538863103 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2302.0 1 2060.0 2 3096.5 3 4606.0 4 6373.0 5 10967.5 6 14881.0 7 17372.5 8 18977.0 9 18495.0 10 16549.0 11 14539.5 12 15653.0 13 21470.5 14 35450.0 15 54908.0 16 71457.0 17 81312.5 18 82358.0 19 75570.0 20 64878.5 21 53197.0 22 43737.5 23 40454.5 24 43710.0 25 52119.0 26 64783.5 27 79045.5 28 94806.5 29 112900.5 30 130266.0 31 148044.0 32 167815.0 33 188287.0 34 207880.5 35 226124.0 36 246787.5 37 265617.5 38 279069.0 39 293327.0 40 308226.0 41 320718.5 42 328960.0 43 336874.5 44 347275.5 45 363857.5 46 385087.5 47 405304.5 48 416470.0 49 418297.5 50 417966.0 51 415304.0 52 394012.5 53 362081.0 54 342727.5 55 327252.5 56 308219.0 57 280637.0 58 250910.5 59 221445.5 60 189744.5 61 164230.5 62 136738.5 63 112614.5 64 95501.0 65 75495.0 66 60387.0 67 44293.0 68 27575.0 69 19676.0 70 14041.0 71 8360.0 72 5563.5 73 4088.5 74 3236.0 75 2430.0 76 1505.5 77 730.5 78 536.5 79 453.0 80 301.5 81 189.5 82 156.5 83 108.0 84 63.0 85 43.0 86 34.0 87 29.0 88 28.0 89 22.5 90 12.5 91 9.0 92 6.5 93 3.0 94 1.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.7893234647505267E-4 7 0.0 8 0.0 9 0.0 10-11 0.005467377253404387 12-13 9.940685915280704E-6 14-15 0.0042049101421637375 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 189.0 20-21 721.0 22-23 1533.0 24-25 3235.0 26-27 4254.0 28-29 6930.0 30-31 12959.0 32-33 16683.0 34-35 23012.0 36-37 29377.0 38-39 37226.0 40-41 43550.0 42-43 58918.0 44-45 71790.0 46-47 68662.0 48-49 56357.0 50-51 45546.0 52-53 43659.0 54-55 47331.0 56-57 51588.0 58-59 52569.0 60-61 52599.0 62-63 54224.0 64-65 59419.0 66-67 65567.0 68-69 66935.0 70-71 67088.0 72-73 64948.0 74-75 68083.0 76-77 67048.0 78-79 74400.0 80-81 77731.0 82-83 76350.0 84-85 79784.0 86-87 85646.0 88-89 94259.0 90-91 100235.0 92-93 105253.0 94-95 122962.0 96-97 352486.0 98-99 47522.0 100-101 7601040.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.11396606995159 #Duplication Level Percentage of deduplicated Percentage of total 1 88.87863670653702 73.87055995570672 2 7.627180822059156 12.678504961080202 3 1.8955953683145517 4.726513473733591 4 0.6954239675498342 2.3119777617267214 5 0.33247191948713467 1.3816529917732694 6 0.18070047961843788 0.9011240119098494 7 0.10776912806847785 0.6269983757570214 8 0.06753455764488078 0.44904519461166487 9 0.04733375367880566 0.354068639750133 >10 0.16104461265441786 2.1889448739018524 >50 0.0047490395054022696 0.2675485723961269 >100 0.0014693023268455428 0.1825786753116258 >500 6.775723748484597E-5 0.03692421303065494 >1k 2.2585317634538153E-5 0.023558299310628843 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 6.958480140696492E-5 0.0 0.0 0.0 3 0.0 6.958480140696492E-5 0.0 0.0 0.0 4 0.0 1.1928823098336843E-4 0.0 0.0 0.0 5 0.0 1.1928823098336843E-4 0.0 0.0 0.0 6 4.970342957640352E-5 1.1928823098336843E-4 0.0 0.0 0.0 7 4.970342957640352E-5 1.1928823098336843E-4 0.0 0.0 0.0 8 4.970342957640352E-5 1.1928823098336843E-4 0.0 9.940685915280703E-6 0.0 9 4.970342957640352E-5 3.379833211195439E-4 0.0 9.940685915280703E-6 0.0 10-11 4.970342957640352E-5 3.379833211195439E-4 0.0 9.940685915280703E-6 0.0 12-13 4.970342957640352E-5 3.379833211195439E-4 0.0 9.940685915280703E-6 0.0 14-15 5.9644115491684216E-5 4.473308661876316E-4 0.0 9.940685915280703E-6 0.0 16-17 8.946617323752633E-5 4.622418950605527E-4 0.0 9.940685915280703E-6 0.0 18-19 8.946617323752633E-5 4.721825809758334E-4 0.0 1.4911028872921054E-5 4.970342957640351E-6 20-21 8.946617323752633E-5 4.970342957640352E-4 0.0 2.4851714788201755E-5 9.940685915280703E-6 22-23 8.946617323752633E-5 5.367970394251579E-4 0.0 3.479240070348246E-5 9.940685915280703E-6 24-25 8.946617323752633E-5 5.815301260439212E-4 0.0 5.4673772534043867E-5 9.940685915280703E-6 26-27 8.946617323752633E-5 6.063818408321229E-4 0.0 9.443651619516668E-5 9.940685915280703E-6 28-29 9.940685915280703E-5 6.063818408321229E-4 0.0 2.6342817675493866E-4 1.9881371830561405E-5 30-31 9.940685915280703E-5 7.256700718154914E-4 0.0 5.566784112557194E-4 2.9822057745842108E-5 32-33 1.0437720211044739E-4 7.256700718154914E-4 0.0 0.001824115865454009 2.9822057745842108E-5 34-35 1.0934754506808773E-4 8.101659020953773E-4 0.0 0.0032903670379579126 2.9822057745842108E-5 36-37 1.0934754506808773E-4 8.946617323752632E-4 0.0 0.005427614509743264 2.9822057745842108E-5 38-39 1.0934754506808773E-4 9.393948189940264E-4 0.0 0.008141421764614895 2.9822057745842108E-5 40-41 1.0934754506808773E-4 0.0010139499633586317 0.0 0.010666355987096195 2.9822057745842108E-5 42-43 1.0934754506808773E-4 0.001058683049977395 0.0 0.013245963982111537 2.9822057745842108E-5 44-45 1.0934754506808773E-4 0.0011630602520878424 0.0 0.01642698347500136 2.9822057745842108E-5 46-47 1.0934754506808773E-4 0.0012227043675795265 0.0 0.019836638743942644 2.9822057745842108E-5 48-49 1.0934754506808773E-4 0.0012276747105371669 0.0 0.023519662875554147 2.9822057745842108E-5 50-51 1.0934754506808773E-4 0.0014066070570122194 0.0 0.027083398776182273 2.9822057745842108E-5 52-53 1.0934754506808773E-4 0.0014115773999698598 0.0 0.030343943756394345 2.9822057745842108E-5 54-55 1.0934754506808773E-4 0.0014115773999698598 0.0 0.03361939976547934 2.9822057745842108E-5 56-57 1.0934754506808773E-4 0.0014215180858851404 0.0 0.03660160554006355 3.976274366112281E-5 58-59 1.0934754506808773E-4 0.0014264884288427808 0.0 0.039742862289292254 4.970342957640352E-5 60-61 1.1431788802572808E-4 0.0014911028872921055 0.0 0.043038199670207805 4.970342957640352E-5 62-63 1.2922891689864913E-4 0.0015557173457414301 0.0 0.046487617682810206 4.970342957640352E-5 64-65 1.3419925985628947E-4 0.0017793827788352458 0.0 0.04958911168837779 5.9644115491684216E-5 66-67 1.3916960281392984E-4 0.0017992641506658072 0.0 0.05315284758900592 5.9644115491684216E-5 68-69 1.3916960281392984E-4 0.0018738192950304125 0.0 0.05687563446427854 5.9644115491684216E-5 70-71 1.4413994577157021E-4 0.0019135820386915353 0.0 0.06034990419166915 5.9644115491684216E-5 72-73 1.4911028872921056E-4 0.001923522724606816 0.0 0.06310844453315954 5.9644115491684216E-5 74-75 1.4911028872921056E-4 0.0019583151253102986 0.0 0.0653699505788859 6.461445844932457E-5 76-77 1.4911028872921056E-4 0.002042810955590184 0.0 0.0676612786823581 6.958480140696492E-5 78-79 1.4911028872921056E-4 0.002082573699251307 0.0 0.06909770779711616 7.455514436460528E-5 80-81 1.4911028872921056E-4 0.002092514385166588 0.0 0.06964941586541425 7.952548732224562E-5 82-83 1.4911028872921056E-4 0.0021024550710818683 0.0 0.07009177638864425 7.952548732224562E-5 84-85 1.4911028872921056E-4 0.0021223364429124305 0.0 0.07026573839216166 7.952548732224562E-5 86-87 1.4911028872921056E-4 0.0021670695295311934 0.0 0.07034029353652625 8.449583027988598E-5 88 1.5905097464449124E-4 0.002246595016853439 0.0 0.07035023422244154 8.946617323752633E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16485 0.0 56.82971 1 GTATCAA 30955 0.0 39.9288 1 TCAACGC 38910 0.0 31.3162 4 ATCAACG 39285 0.0 31.039227 3 TATCAAC 39795 0.0 30.74035 2 CAACGCA 39955 0.0 30.500328 5 AACGCAG 40680 0.0 30.010511 6 ACGCAGA 46185 0.0 26.442896 7 GTGGTAT 6870 0.0 26.292883 1 TGGTATC 6680 0.0 25.731255 2 CGCAGAG 50410 0.0 24.252674 8 GTACATG 39705 0.0 23.385662 1 TACATGG 39445 0.0 23.129553 2 GCAGAGT 53680 0.0 22.638561 9 ACATGGG 40385 0.0 22.093014 3 GAGTACT 31790 0.0 21.63613 12-13 CAGAGTA 52150 0.0 20.433836 10-11 TATATAC 11985 0.0 20.034533 3 CATGGGG 29280 0.0 19.807135 4 AGAGTAC 49445 0.0 19.538982 10-11 >>END_MODULE