##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139213_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9422098 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.63253927097765 33.0 33.0 33.0 33.0 33.0 2 32.6343577619337 33.0 33.0 33.0 33.0 33.0 3 32.627064587950585 33.0 33.0 33.0 33.0 33.0 4 36.53880070022621 37.0 37.0 37.0 37.0 37.0 5 36.56737278682518 37.0 37.0 37.0 37.0 37.0 6 36.556279185378884 37.0 37.0 37.0 37.0 37.0 7 36.52231318332711 37.0 37.0 37.0 37.0 37.0 8 36.52484648323547 37.0 37.0 37.0 37.0 37.0 9 36.55664810533705 37.0 37.0 37.0 37.0 37.0 10-11 36.48639262720469 37.0 37.0 37.0 37.0 37.0 12-13 36.48239468534503 37.0 37.0 37.0 37.0 37.0 14-15 38.536329276133614 40.0 37.0 40.0 37.0 40.0 16-17 38.4806458179484 40.0 37.0 40.0 37.0 40.0 18-19 38.52745943631662 40.0 37.0 40.0 37.0 40.0 20-21 38.52397777009952 40.0 37.0 40.0 37.0 40.0 22-23 38.530547980611075 40.0 37.0 40.0 37.0 40.0 24-25 38.5178924487079 40.0 37.0 40.0 37.0 40.0 26-27 38.405925236975776 40.0 37.0 40.0 37.0 40.0 28-29 38.330475466484025 40.0 37.0 40.0 37.0 40.0 30-31 38.25754504490487 40.0 37.0 40.0 37.0 40.0 32-33 38.181139113367195 40.0 37.0 40.0 37.0 40.0 34-35 38.144813071480456 40.0 37.0 40.0 37.0 40.0 36-37 38.079643072095635 40.0 37.0 40.0 33.0 40.0 38-39 38.025721237010515 40.0 37.0 40.0 33.0 40.0 40-41 38.001413297341145 40.0 37.0 40.0 33.0 40.0 42-43 37.951026420013314 40.0 37.0 40.0 33.0 40.0 44-45 37.885823368185186 40.0 37.0 40.0 33.0 40.0 46-47 37.84546019289275 40.0 37.0 40.0 33.0 40.0 48-49 37.83156781181795 40.0 37.0 40.0 33.0 40.0 50-51 37.75634279117779 40.0 37.0 40.0 33.0 40.0 52-53 37.663800212107816 40.0 37.0 40.0 33.0 40.0 54-55 37.48854481044686 40.0 37.0 40.0 33.0 40.0 56-57 37.419715249733294 40.0 37.0 40.0 33.0 40.0 58-59 37.319719707765046 40.0 37.0 40.0 33.0 40.0 60-61 37.19298417572591 37.0 37.0 40.0 33.0 40.0 62-63 37.04844213001809 37.0 37.0 40.0 33.0 40.0 64-65 36.881083960634584 37.0 37.0 40.0 33.0 40.0 66-67 36.69105911095186 37.0 37.0 40.0 33.0 40.0 68-69 36.50545665893371 37.0 37.0 40.0 33.0 40.0 70-71 36.25269593920606 37.0 37.0 40.0 33.0 40.0 72-73 36.04783957573022 37.0 37.0 37.0 33.0 40.0 74-75 35.86490175508867 37.0 37.0 37.0 33.0 40.0 76-77 34.21901697363532 35.0 33.0 37.0 30.0 37.0 78-79 35.30461280008816 37.0 33.0 37.0 33.0 37.0 80-81 35.35486942282604 37.0 33.0 37.0 33.0 37.0 82-83 35.22993979946098 37.0 33.0 37.0 33.0 37.0 84-85 35.06330943782295 37.0 33.0 37.0 33.0 37.0 86-87 34.98181626670821 37.0 33.0 37.0 33.0 37.0 88-89 34.882485201409736 37.0 33.0 37.0 33.0 37.0 90-91 34.77617304212462 37.0 33.0 37.0 33.0 37.0 92-93 34.75150106473785 37.0 33.0 37.0 33.0 37.0 94-95 34.78135023671 37.0 33.0 37.0 33.0 37.0 96-97 34.77311160712854 37.0 33.0 37.0 33.0 37.0 98-99 34.752811656583 37.0 33.0 37.0 33.0 37.0 100 34.73937315020146 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 3.0 17 5.0 18 3.0 19 17.0 20 69.0 21 389.0 22 1354.0 23 3923.0 24 8911.0 25 17065.0 26 29768.0 27 47081.0 28 69136.0 29 95857.0 30 129784.0 31 172556.0 32 228546.0 33 306615.0 34 420009.0 35 606171.0 36 1058463.0 37 2625134.0 38 3485403.0 39 115836.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.8217365177055 20.645157798188897 14.682642867862338 22.85046281624326 2 14.26955015751269 21.668210201167508 42.31620176313173 21.746037878188062 3 17.615758188887444 27.55231372036249 31.227217122980466 23.6047109677696 4 11.774277873144602 18.838458271183338 39.74883300937859 29.638430846293467 5 12.51366733820854 38.460139132494696 35.82001588181316 13.206177647483608 6 27.999561456296234 39.074679153063 19.352566425255365 13.573192965385402 7 24.907998197429066 33.82445183652303 23.72717838426219 17.540371581785713 8 23.898127572012093 36.81901843941763 21.76146968541401 17.52138430315626 9 25.25045908034495 16.900078942078505 21.700411097401023 36.14905088017552 10-11 23.396822618666214 27.410126779912908 29.15485842662951 20.038192174791373 12-13 24.700237924729603 25.171555484328195 29.399616168268267 20.728590422673932 14-15 21.87997554160268 26.38129074829598 27.48367520853161 24.255058501569728 16-17 20.781215606120846 29.613505399752793 28.049872756577145 21.555406237549217 18-19 20.72829214894602 28.190738410914427 30.577903137921087 20.503066302218464 20-21 21.678060491818414 27.159435010619028 30.622436123997932 20.540068373564626 22-23 21.347981969912667 27.368988553370976 30.463776012430355 20.819253464286 24-25 21.08980040490784 27.641726371594128 30.512155065847296 20.75631815765074 26-27 20.99689018208517 27.90403520013053 30.485488932719328 20.61358568506497 28-29 20.88780883637302 27.81500599292752 30.535537356092025 20.76164781460744 30-31 21.353499168257468 27.598981936713297 30.402247149286065 20.64527174574317 32-33 21.004535657093403 27.78889702365097 30.364084155760622 20.842483163495 34-35 21.085751168564745 27.708442273829103 30.440182064662284 20.765624492943864 36-37 21.002933958299906 27.879870319794474 30.226800826252457 20.89039489565316 38-39 20.923282154450863 27.70010948798431 30.366855395289804 21.00975296227502 40-41 21.119659093639523 27.613183056282192 30.280899208541275 20.986258641537013 42-43 21.212271941231172 27.726647904648296 29.99715643164057 21.063923722479956 44-45 21.170690869376255 28.01634022129866 29.6111248052441 21.20184410408099 46-47 21.476279809633077 27.91528348092846 29.054429096964128 21.554007612474336 48-49 21.36509534944299 28.15147965887721 28.932862359861446 21.550562631818355 50-51 21.33723648105484 28.32345270276429 28.80941180520261 21.529899010978255 52-53 21.43127882708574 28.329399604227117 28.823719511461686 21.415602057225456 54-55 21.483941956561313 28.261436751646414 28.634711048882465 21.619910242909803 56-57 21.601850941776082 28.376105084009783 28.41824346694529 21.60380050726884 58-59 21.344655047784048 28.60579650607471 28.650820925609427 21.398727520531818 60-61 21.634729593536917 28.74039417815391 28.338487410049822 21.286388818259347 62-63 21.41626613674116 28.8310111880772 28.322080571209852 21.430642103971792 64-65 21.441538538274017 28.707658160370592 28.304826474533627 21.54597682682176 66-67 21.559146465099595 28.55051960301035 28.215024127140794 21.675309804749265 68-69 21.552278129553457 28.465282935169274 28.298536998319683 21.683901936957582 70-71 21.571178022099787 28.262792855807255 28.39846791435121 21.76756120774175 72-73 21.592502845313895 28.289641496381286 28.31802126628223 21.799834392022593 74-75 21.539651901914556 28.34628631191734 28.261132451766635 21.852929334401466 76-77 21.70218614279977 28.267575482256863 28.178605368954667 21.851633005988703 78-79 21.711817711185198 28.233149706900495 28.113160529352815 21.94187205256149 80-81 21.68559085390148 28.289729385760698 28.137673681819926 21.887006078517896 82-83 21.716048479543943 28.229439393293887 28.250056349281653 21.804455777880516 84-85 21.871595868502077 28.155948561085793 28.14399299317134 21.828462577240796 86-87 21.71078687363968 28.189763037161914 28.264598302520767 21.834851786677635 88-89 21.75819473507178 28.14442277810126 28.218542562144183 21.878839924682776 90-91 21.931491888654847 28.027720325180738 28.244615946456296 21.79617183970812 92-93 21.86103943856958 28.001760176944845 28.27092817726513 21.866272207220447 94-95 21.74114488197719 28.00297502794708 28.35308241352603 21.9027976765497 96-97 21.82845981700796 28.08248621268922 28.39928273365036 21.68977123665246 98-99 22.86373833603981 29.96300525896437 28.62757841806083 18.545677986934994 100 21.797558311292626 30.88495170787376 22.63903464913243 24.678455331701183 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3756.0 1 3346.5 2 4727.5 3 6868.0 4 9186.5 5 14721.5 6 19612.5 7 24105.5 8 28226.5 9 28221.5 10 24262.0 11 20479.5 12 21435.5 13 28149.5 14 44267.0 15 65847.0 16 82858.5 17 91662.0 18 91618.0 19 84625.5 20 74377.5 21 64533.0 22 58560.0 23 59083.0 24 66610.0 25 80046.0 26 98014.5 27 118755.5 28 140307.5 29 162896.0 30 184633.5 31 204918.5 32 226633.0 33 247104.0 34 265991.0 35 283486.0 36 301695.0 37 317911.0 38 326805.0 39 333365.0 40 340887.5 41 347757.0 42 352252.5 43 357349.5 44 362019.0 45 365306.0 46 371608.0 47 378436.0 48 375951.0 49 365357.5 50 356522.0 51 343348.5 52 321621.0 53 297616.0 54 274366.0 55 250780.0 56 225562.0 57 198947.0 58 173552.5 59 149563.0 60 124852.0 61 101140.0 62 78728.5 63 59369.0 64 44293.0 65 32671.0 66 24054.0 67 17921.0 68 13518.5 69 9407.5 70 6290.0 71 4581.0 72 3232.5 73 2245.0 74 1531.5 75 1038.5 76 689.0 77 443.5 78 318.5 79 250.0 80 165.0 81 109.5 82 77.0 83 49.5 84 38.5 85 29.0 86 19.5 87 14.5 88 11.0 89 9.0 90 6.5 91 3.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 4.245338989256957E-5 7 0.0 8 0.0 9 0.0 10-11 0.005672834224394609 12-13 5.306673736571197E-6 14-15 0.004086138777159822 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 199.0 20-21 738.0 22-23 1651.0 24-25 4223.0 26-27 4776.0 28-29 8318.0 30-31 18620.0 32-33 23709.0 34-35 33055.0 36-37 43301.0 38-39 50937.0 40-41 57994.0 42-43 73555.0 44-45 89816.0 46-47 87060.0 48-49 75913.0 50-51 63073.0 52-53 57778.0 54-55 65332.0 56-57 73317.0 58-59 72297.0 60-61 77173.0 62-63 79366.0 64-65 82255.0 66-67 90249.0 68-69 81006.0 70-71 79713.0 72-73 76883.0 74-75 79334.0 76-77 79940.0 78-79 86859.0 80-81 88776.0 82-83 86268.0 84-85 87780.0 86-87 92446.0 88-89 99732.0 90-91 103839.0 92-93 107243.0 94-95 123311.0 96-97 300759.0 98-99 552371.0 100-101 6061133.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.20793311673754 #Duplication Level Percentage of deduplicated Percentage of total 1 88.04574291952368 72.3805854514167 2 7.859963928146114 12.92302777810011 3 2.200394778894942 5.426697204414416 4 0.8670539045378964 2.8511483757143012 5 0.3990324726108656 1.6401817409900217 6 0.2204695125005269 1.087460576275383 7 0.12807384931868515 0.7370080507155513 8 0.07674825734543389 0.5047452485343672 9 0.04907952851199922 0.36312539375839004 >10 0.1505880496891428 1.858758036914179 >50 0.002416350142901079 0.13005651737877982 >100 3.909741916060624E-4 0.05778449857476773 >500 2.2737298868063757E-5 0.014224508082414048 >1k 2.273728732230234E-5 0.02519661913063736 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0613347473142393E-5 0.0 0.0 0.0 3 0.0 1.0613347473142393E-5 0.0 1.0613347473142393E-5 0.0 4 0.0 9.552012725828154E-5 0.0 4.245338989256957E-5 0.0 5 0.0 1.0613347473142394E-4 0.0 4.245338989256957E-5 0.0 6 0.0 1.0613347473142394E-4 0.0 4.245338989256957E-5 0.0 7 0.0 1.0613347473142394E-4 0.0 4.245338989256957E-5 0.0 8 0.0 1.3797351715085112E-4 0.0 4.245338989256957E-5 0.0 9 2.1226694946284787E-5 2.5472033935541747E-4 0.0 1.1674682220456632E-4 1.0613347473142393E-5 10-11 2.1226694946284787E-5 2.5472033935541747E-4 0.0 1.4858686462399353E-4 1.0613347473142393E-5 12-13 2.1226694946284787E-5 2.5472033935541747E-4 0.0 2.0165360198970547E-4 1.0613347473142393E-5 14-15 2.1226694946284787E-5 3.23707097930843E-4 0.0 2.3349364440913265E-4 1.0613347473142393E-5 16-17 2.1226694946284787E-5 3.396271191405566E-4 0.0 3.024804029845582E-4 1.0613347473142393E-5 18-19 2.6533368682855985E-5 3.6616048782341256E-4 0.0 3.396271191405566E-4 1.5920021209713588E-5 20-21 3.184004241942718E-5 4.1392055145255335E-4 0.0 4.882139837645501E-4 3.184004241942718E-5 22-23 4.245338989256957E-5 4.722939625548365E-4 0.0 7.85387713012537E-4 3.184004241942718E-5 24-25 4.245338989256957E-5 5.041340049742637E-4 0.0 0.001570775426025074 4.245338989256957E-5 26-27 4.245338989256957E-5 5.200540261839772E-4 0.0 0.0036191514883415566 4.245338989256957E-5 28-29 4.245338989256957E-5 5.200540261839772E-4 0.0 0.018350477781063197 4.776006362914077E-5 30-31 4.245338989256957E-5 5.837341110228317E-4 0.0 0.025732060948633735 5.306673736571197E-5 32-33 4.245338989256957E-5 5.996541322325453E-4 0.0 0.028788705020898742 5.306673736571197E-5 34-35 4.245338989256957E-5 7.429343231199676E-4 0.0 0.03329937769698426 5.306673736571197E-5 36-37 4.245338989256957E-5 8.596811453245339E-4 0.0 0.04006008003737596 5.306673736571197E-5 38-39 4.245338989256957E-5 8.809078402708186E-4 0.0 0.05768885019026548 5.306673736571197E-5 40-41 4.776006362914077E-5 9.870413150022425E-4 0.0 0.07717495615095492 5.306673736571197E-5 42-43 5.306673736571197E-5 0.001024188031158241 0.0 0.08853654462095384 5.306673736571197E-5 44-45 5.306673736571197E-5 0.0011621615483090922 0.0 0.10306091063794921 5.306673736571197E-5 46-47 5.306673736571197E-5 0.0012736016967770873 0.0 0.11811063735486513 5.837341110228317E-5 48-49 7.429343231199676E-5 0.0012736016967770873 0.0 0.13320281746167362 6.898675857542556E-5 50-51 9.552012725828154E-5 0.0014487219300839368 0.0 0.14827377087353583 7.429343231199675E-5 52-53 9.552012725828154E-5 0.001454028603820508 0.0 0.1876864367150501 7.429343231199675E-5 54-55 9.552012725828154E-5 0.0014752552987667927 0.0 0.23778674346201878 7.429343231199675E-5 56-57 9.552012725828154E-5 0.0015070953411862199 0.0 0.28682040878793663 8.490677978513915E-5 58-59 9.552012725828154E-5 0.0015230153623959335 0.0 0.3259783542900955 9.552012725828154E-5 60-61 9.552012725828154E-5 0.0015654687522885032 0.0 0.35333956407585654 1.0082680099485273E-4 62-63 1.1144014846799514E-4 0.001592002120971359 0.0 0.3720137489548506 1.0613347473142394E-4 64-65 1.2736016967770873E-4 0.0017936557229610646 0.0 0.3779678368872835 1.0613347473142394E-4 66-67 1.2736016967770873E-4 0.0017936557229610646 0.0 0.3833222706874838 1.0613347473142394E-4 68-69 1.2736016967770873E-4 0.0018361091128536343 0.0 0.38861833107658184 1.1144014846799513E-4 70-71 1.2736016967770873E-4 0.0018520291340633477 0.0 0.393060016994092 1.2736016967770873E-4 72-73 1.326668434142799E-4 0.0018573358077999189 0.0 0.3970028755803644 1.2736016967770873E-4 74-75 1.3797351715085112E-4 0.0018944825239559171 0.0 0.4001285064112048 1.2736016967770873E-4 76-77 1.3797351715085112E-4 0.0019581626087947714 0.0 0.40336027071677666 1.2736016967770873E-4 78-79 1.3797351715085112E-4 0.001974082630004485 0.0 0.4055307002750343 1.2736016967770873E-4 80-81 1.3797351715085112E-4 0.001974082630004485 0.0 0.40625240790320793 1.326668434142799E-4 82-83 1.3797351715085112E-4 0.0019793893037410564 0.0 0.4066557151071874 1.3797351715085112E-4 84-85 1.485868646239935E-4 0.00199530932495077 0.0 0.4068679820566502 1.3797351715085112E-4 86-87 1.485868646239935E-4 0.002048376062316482 0.0 0.406958195510172 1.4328019088742232E-4 88 1.485868646239935E-4 0.002165122884521048 0.0 0.40697942220511824 1.485868646239935E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18090 0.0 53.085613 1 GTATCAA 34270 0.0 39.057407 1 TCAACGC 43170 0.0 30.523123 4 ATCAACG 43410 0.0 30.422731 3 TATCAAC 44160 0.0 30.127352 2 CAACGCA 44095 0.0 29.875887 5 AACGCAG 44710 0.0 29.483944 6 ACGCAGA 50585 0.0 26.067905 7 CGCAGAG 51100 0.0 25.780785 8 CTTATAC 11020 0.0 24.330706 1 TGGTATC 7290 0.0 24.014671 2 GTGGTAT 7795 0.0 23.385578 1 GCAGAGT 57285 0.0 22.902403 9 GTACATG 35855 0.0 21.971867 1 TACATGG 35580 0.0 21.568441 2 TATACAC 14695 0.0 21.51346 3 GAGTACT 37390 0.0 21.105724 12-13 ACATGGG 35820 0.0 20.771484 3 CAGAGTA 56235 0.0 19.951767 10-11 AGAGTAC 53710 0.0 19.59204 10-11 >>END_MODULE