##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139212_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8940825 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60921905976238 33.0 33.0 33.0 33.0 33.0 2 32.61345558155987 33.0 33.0 33.0 33.0 33.0 3 32.61545606809215 33.0 33.0 33.0 33.0 33.0 4 36.519362586785896 37.0 37.0 37.0 37.0 37.0 5 36.54106181476541 37.0 37.0 37.0 37.0 37.0 6 36.52996753655283 37.0 37.0 37.0 37.0 37.0 7 36.49555382193478 37.0 37.0 37.0 37.0 37.0 8 36.49309856752593 37.0 37.0 37.0 37.0 37.0 9 36.53556019718538 37.0 37.0 37.0 37.0 37.0 10-11 36.45593678435715 37.0 37.0 37.0 37.0 37.0 12-13 36.45400737627679 37.0 37.0 37.0 37.0 37.0 14-15 38.50961801623452 40.0 37.0 40.0 37.0 40.0 16-17 38.44699845931444 40.0 37.0 40.0 37.0 40.0 18-19 38.46152060911605 40.0 37.0 40.0 37.0 40.0 20-21 38.446930467413495 40.0 37.0 40.0 37.0 40.0 22-23 38.45194277749125 40.0 37.0 40.0 37.0 40.0 24-25 38.4388594952601 40.0 37.0 40.0 37.0 40.0 26-27 38.33119417847004 40.0 37.0 40.0 37.0 40.0 28-29 38.25622628412977 40.0 37.0 40.0 37.0 40.0 30-31 38.2012329754906 40.0 37.0 40.0 37.0 40.0 32-33 38.13085488756418 40.0 37.0 40.0 37.0 40.0 34-35 38.091379652343434 40.0 37.0 40.0 33.0 40.0 36-37 38.024421245061106 40.0 37.0 40.0 33.0 40.0 38-39 37.9601823478215 40.0 37.0 40.0 33.0 40.0 40-41 37.926241727464074 40.0 37.0 40.0 33.0 40.0 42-43 37.8656382491084 40.0 37.0 40.0 33.0 40.0 44-45 37.79082386830164 40.0 37.0 40.0 33.0 40.0 46-47 37.74151347547726 40.0 37.0 40.0 33.0 40.0 48-49 37.70344744822091 40.0 37.0 40.0 33.0 40.0 50-51 37.60502731356645 40.0 37.0 40.0 33.0 40.0 52-53 37.49282584528562 40.0 37.0 40.0 33.0 40.0 54-55 37.29000147003786 40.0 37.0 40.0 33.0 40.0 56-57 37.1992233431566 38.5 37.0 40.0 33.0 40.0 58-59 37.06429054068035 37.0 37.0 40.0 33.0 40.0 60-61 36.91520108205666 37.0 37.0 40.0 33.0 40.0 62-63 36.746617394402065 37.0 37.0 40.0 33.0 40.0 64-65 36.55775654534857 37.0 37.0 40.0 33.0 40.0 66-67 36.34740383704805 37.0 37.0 40.0 33.0 40.0 68-69 36.14354724043483 37.0 37.0 40.0 33.0 40.0 70-71 35.8781926386993 37.0 35.0 37.0 33.0 40.0 72-73 35.670366021778975 37.0 33.0 37.0 33.0 40.0 74-75 35.494115774198264 37.0 33.0 37.0 33.0 40.0 76-77 33.84299020710563 35.0 33.0 37.0 27.0 37.0 78-79 34.98664174879896 37.0 33.0 37.0 33.0 37.0 80-81 35.05856430551551 37.0 33.0 37.0 33.0 37.0 82-83 34.94354762953052 37.0 33.0 37.0 33.0 37.0 84-85 34.785977768494085 37.0 33.0 37.0 33.0 37.0 86-87 34.71503322407753 37.0 33.0 37.0 33.0 37.0 88-89 34.61931469157255 37.0 33.0 37.0 33.0 37.0 90-91 34.51122779921076 37.0 33.0 37.0 33.0 37.0 92-93 34.48065159935708 37.0 33.0 37.0 33.0 37.0 94-95 34.50832661044664 37.0 33.0 37.0 33.0 37.0 96-97 34.5175038370996 37.0 33.0 37.0 33.0 37.0 98-99 34.50539920309837 37.0 33.0 37.0 33.0 37.0 100 34.48660792938689 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 7.0 20 56.0 21 375.0 22 1465.0 23 4214.0 24 9658.0 25 18884.0 26 32644.0 27 51402.0 28 74453.0 29 102957.0 30 137343.0 31 180885.0 32 237956.0 33 316626.0 34 434120.0 35 630969.0 36 1134126.0 37 2652697.0 38 2859335.0 39 60644.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.12050901342997 19.72414178781041 14.046455444547904 24.108893754211717 2 14.87184907433039 20.89497333859012 41.34820891808083 22.884968668998667 3 18.309742109928333 25.994402082581864 30.130116627939817 25.565739179549986 4 12.57366070804428 18.037250477444754 38.03354835823316 31.355540456277804 5 13.774892138029768 37.31943081315203 35.11852653418448 13.787150514633717 6 30.292731932058043 37.25172266309711 18.59905726641261 13.856488138432233 7 26.75518198823934 32.3437714081195 22.735284495558293 18.165762108082866 8 24.807341604382145 36.2679730338084 20.764839933675024 18.159845428134428 9 25.69554822960968 16.618231539035826 20.878979288824016 36.80724094253047 10-11 24.56358365161432 26.542137162611574 28.250046740368894 20.64423244540521 12-13 25.401769456595947 24.092097104249007 28.35368417944476 22.15244925971029 14-15 22.5071569388094 25.274366797776775 26.117310992025622 26.1011652713882 16-17 22.148403530994063 28.565853822214393 26.61872366364402 22.66701898314753 18-19 22.16922375731546 27.43759105004292 28.418512832988007 21.97467235965361 20-21 23.04678167522542 26.588207305320744 28.434351704458514 21.930659314995317 22-23 22.855229407745302 26.644019814252708 28.199218398907394 22.301532379094596 24-25 22.60894519630288 26.777712669028297 28.434027044527394 22.179315090141433 26-27 22.529567940260108 26.887718769295027 28.37325882410479 22.209454466340073 28-29 22.423036943151853 26.75500727836183 28.386534899046566 22.43542087943975 30-31 22.837369214490895 26.566311684866317 28.35086704285588 22.245452057786906 32-33 22.75867260823224 26.61762131759894 28.33726060652877 22.28644546764005 34-35 22.582756890656867 26.773271919633306 28.399678325265864 22.244292864443967 36-37 22.85358494651124 26.705671879283383 28.02635772699034 22.41438544721504 38-39 22.422833921590577 26.91355806601989 28.254812917193878 22.408795095195654 40-41 22.632034599494474 26.711429070757298 28.229630005468454 22.426906324279773 42-43 22.566681429040536 26.78311767596574 28.026340074715627 22.623860820278097 44-45 22.47649889036185 26.962550195069134 27.840117823522093 22.72083309104692 46-47 22.792078279970156 26.85948870321202 27.469123812340975 22.879309204476847 48-49 22.82965588704525 27.0946049173566 27.28212508191578 22.793614113682377 50-51 22.69357754571874 27.185449825041335 27.35392439494701 22.76704823429291 52-53 22.924418690333376 27.153348894939157 27.331783170276598 22.590449244450873 54-55 22.959806029006387 27.0850042983399 27.13187959030626 22.823310082347454 56-57 23.022733593264 27.308331874147697 26.92086119659291 22.7480733359954 58-59 22.65951935352679 27.32468547376939 27.26312433754046 22.75267083516336 60-61 22.978585076014802 27.41551853636497 27.010081633001576 22.595814754618658 62-63 22.749845795566486 27.527203748017055 27.087721874913655 22.6352285815028 64-65 22.860829705340233 27.345709984947312 27.007439336723348 22.786020972989103 66-67 22.89600278206522 27.36007395714522 26.95058160909444 22.793341651695123 68-69 22.86871760629649 27.381478280214772 26.955644825177572 22.794159288311164 70-71 22.883240890067526 27.20568130672219 26.83116874619451 23.079909057015772 72-73 22.87419081916098 27.255576635051227 26.699955551580924 23.170276994206876 74-75 22.776881406542344 27.33717476625842 26.8597546708574 23.026189156341832 76-77 22.89904029525023 27.195714549422444 26.78634943646852 23.118895718858802 78-79 22.759804874052563 27.21952654231123 26.680101786131168 23.340566797505044 80-81 22.95325537181798 27.324805827000088 26.739042387865574 22.982896413316357 82-83 23.116394474170647 27.1007965482973 26.859009719116216 22.923799258415837 84-85 22.95345265394703 27.111885220111056 26.77125776786419 23.163404358077734 86-87 22.818229137514216 27.37798704047497 26.785447230306236 23.01833659170458 88-89 23.116501497690106 27.236954450230357 26.68083680080698 22.965707251272562 90-91 23.1021852816988 27.262999270225762 26.69349092390731 22.94132452416812 92-93 22.98076907788893 27.166706173595312 26.83663840072082 23.015886347794943 94-95 22.90226930267381 27.4414483584635 26.87151826480424 22.78476407405845 96-97 23.09071497292989 27.322139887144438 26.94731970703504 22.639825432890635 98-99 24.106836096252216 29.34769723056047 27.119917839816114 19.4255488333712 100 22.891444410965597 30.443878203481418 21.059825441392682 25.604851944160306 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2926.0 1 2427.0 2 2880.0 3 3951.0 4 5081.0 5 8207.5 6 11018.5 7 13194.0 8 14741.5 9 14478.0 10 12910.0 11 11319.5 12 12008.5 13 15867.5 14 24937.5 15 37266.5 16 47494.0 17 53431.0 18 54383.0 19 50862.0 20 44760.5 21 38537.5 22 34627.0 23 34894.5 24 39574.5 25 48753.0 26 61253.5 27 74715.5 28 89626.0 29 106752.0 30 123456.0 31 139541.5 32 156922.0 33 174573.5 34 191862.0 35 208599.0 36 227090.0 37 244319.5 38 257767.0 39 271542.5 40 285333.5 41 297866.5 42 306705.0 43 313619.0 44 321763.0 45 334838.5 46 348023.5 47 362299.5 48 371704.0 49 374751.5 50 381310.0 51 379810.5 52 357905.5 53 333747.5 54 318977.0 55 301818.0 56 281310.5 57 256198.0 58 230022.5 59 201738.0 60 170522.0 61 144571.5 62 119031.5 63 96019.5 64 78504.0 65 61443.5 66 49055.0 67 36339.0 68 23740.0 69 17362.5 70 12410.0 71 7569.0 72 5077.0 73 3632.5 74 2796.5 75 2080.0 76 1298.0 77 672.0 78 477.0 79 366.5 80 234.0 81 143.0 82 112.0 83 73.5 84 44.5 85 33.5 86 24.0 87 17.5 88 14.0 89 10.5 90 6.0 91 3.5 92 3.5 93 3.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.901390531634385E-4 7 0.0 8 0.0 9 0.0 10-11 0.005374224414413659 12-13 1.1184650186084617E-5 14-15 0.004199836144874774 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 158.0 20-21 655.0 22-23 1322.0 24-25 2592.0 26-27 3758.0 28-29 6632.0 30-31 14918.0 32-33 18448.0 34-35 25485.0 36-37 35236.0 38-39 40454.0 40-41 44501.0 42-43 54831.0 44-45 65280.0 46-47 63776.0 48-49 56374.0 50-51 47323.0 52-53 44690.0 54-55 50951.0 56-57 55098.0 58-59 36861.0 60-61 59542.0 62-63 59531.0 64-65 62280.0 66-67 67179.0 68-69 60482.0 70-71 59459.0 72-73 56708.0 74-75 58541.0 76-77 57596.0 78-79 62590.0 80-81 64088.0 82-83 63229.0 84-85 64305.0 86-87 69055.0 88-89 74658.0 90-91 79015.0 92-93 82933.0 94-95 104542.0 96-97 327557.0 98-99 568459.0 100-101 6169733.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.86965687101821 #Duplication Level Percentage of deduplicated Percentage of total 1 89.59143960072154 75.14003297893068 2 7.102106480074928 11.913024670906381 3 1.7616928355246335 4.432577208827464 4 0.6694814474954351 2.2459671713181892 5 0.3014225385242804 1.2640102439611332 6 0.1684958875646532 0.8479015364535077 7 0.11041901099124363 0.6482563194710954 8 0.06908549169708286 0.4635341186719934 9 0.04937312672771974 0.37268164775728374 >10 0.17126869970979244 2.2738560610360126 >50 0.00417191725985984 0.238746623123577 >100 9.696269408413717E-4 0.11346547797832988 >500 7.33367680466802E-5 0.045945941564229806 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.355395055825385E-5 0.0 0.0 0.0 3 0.0 3.355395055825385E-5 0.0 0.0 0.0 4 0.0 1.1184650186084617E-4 0.0 0.0 0.0 5 0.0 1.1184650186084617E-4 0.0 0.0 0.0 6 2.2369300372169234E-5 1.1184650186084617E-4 0.0 0.0 1.1184650186084617E-5 7 2.2369300372169234E-5 1.1184650186084617E-4 0.0 0.0 2.2369300372169234E-5 8 2.2369300372169234E-5 1.342158022330154E-4 0.0 0.0 2.2369300372169234E-5 9 2.2369300372169234E-5 3.019855550242847E-4 0.0 3.355395055825385E-5 2.2369300372169234E-5 10-11 2.2369300372169234E-5 3.131702052103693E-4 0.0 6.71079011165077E-5 2.2369300372169234E-5 12-13 2.2369300372169234E-5 3.131702052103693E-4 0.0 7.270022620955001E-5 2.2369300372169234E-5 14-15 2.2369300372169234E-5 4.5297833253642704E-4 0.0 8.388487639563464E-5 2.7961625465211544E-5 16-17 1.0066185167476156E-4 4.809399580016386E-4 0.0 8.947720148867694E-5 4.473860074433847E-5 18-19 1.0066185167476156E-4 5.312708838390194E-4 0.0 8.947720148867694E-5 4.473860074433847E-5 20-21 1.0066185167476156E-4 5.816018096764001E-4 0.0 8.947720148867694E-5 4.473860074433847E-5 22-23 1.0625417676780386E-4 6.375250606068233E-4 0.0 1.1184650186084617E-4 5.0330925837380774E-5 24-25 1.1184650186084617E-4 7.158176119094155E-4 0.0 1.1184650186084617E-4 6.71079011165077E-5 26-27 1.1184650186084617E-4 7.437792373746271E-4 0.0 2.2369300372169235E-4 6.71079011165077E-5 28-29 1.1184650186084617E-4 7.493715624676694E-4 0.0 5.871941347694424E-4 6.71079011165077E-5 30-31 1.230311520469308E-4 8.724027145146001E-4 0.0 0.0017671747294013694 6.71079011165077E-5 32-33 1.230311520469308E-4 8.724027145146001E-4 0.0 0.004574521926108609 6.71079011165077E-5 34-35 1.230311520469308E-4 0.0010345801422128272 0.0 0.007818070480073148 6.71079011165077E-5 36-37 1.230311520469308E-4 0.0011911652448180119 0.0 0.013063671417346833 6.71079011165077E-5 38-39 1.230311520469308E-4 0.0012359038455623502 0.0 0.02928700651226257 6.71079011165077E-5 40-41 1.230311520469308E-4 0.0013197887219579848 0.0 0.04687486892988063 6.71079011165077E-5 42-43 1.230311520469308E-4 0.0013421580223301542 0.0 0.05638182158805256 6.71079011165077E-5 44-45 1.286234771399731E-4 0.0014651891743770848 0.0 0.06921620767658465 7.270022620955001E-5 46-47 1.342158022330154E-4 0.0015658510260518465 0.0 0.08210092469095413 9.506952658171925E-5 48-49 1.342158022330154E-4 0.0015658510260518465 0.0 0.09546098933823222 1.0066185167476156E-4 50-51 1.5099277751214234E-4 0.0017224361286570311 0.0 0.10729434923510973 1.0066185167476156E-4 52-53 1.5658510260518465E-4 0.0017336207788431156 0.0 0.14135720137683044 1.1743882695388849E-4 54-55 1.5658510260518465E-4 0.0017559900792152847 0.0 0.18378057953264937 1.342158022330154E-4 56-57 1.5658510260518465E-4 0.001811913330145708 0.0 0.22710432202844816 1.342158022330154E-4 58-59 1.5658510260518465E-4 0.001828690305424835 0.0 0.37445649590501995 1.342158022330154E-4 60-61 1.5658510260518465E-4 0.0018454672807039618 0.0 0.49915975315477035 1.342158022330154E-4 62-63 1.901390531634385E-4 0.0019013905316343852 0.0 0.5052050565803492 1.342158022330154E-4 64-65 1.901390531634385E-4 0.002102714234983908 0.0 0.5101318949873195 1.342158022330154E-4 66-67 2.0132370334952312E-4 0.00213067586044912 0.0 0.5142254769554264 1.398081273260577E-4 68-69 2.1250835353560772E-4 0.0021865991113795427 0.0 0.5183246512486264 1.4540045241910002E-4 70-71 2.1250835353560772E-4 0.0021977837615656274 0.0 0.5216241230535213 1.5658510260518465E-4 72-73 2.1250835353560772E-4 0.0022145607368447544 0.0 0.5243699546742051 1.901390531634385E-4 74-75 2.1250835353560772E-4 0.0022648916626821346 0.0 0.5268529470155159 1.901390531634385E-4 76-77 2.1250835353560772E-4 0.002387922814729066 0.0 0.5292632391306171 1.957313782564808E-4 78-79 2.1250835353560772E-4 0.0024382537405664467 0.0 0.5307899438810177 2.0132370334952312E-4 80-81 2.1250835353560772E-4 0.0024382537405664467 0.0 0.5312149605880889 2.2369300372169235E-4 82-83 2.1250835353560772E-4 0.0024606230409386157 0.0 0.5315225384682063 2.404699790008193E-4 84-85 2.1250835353560772E-4 0.002482992341310785 0.0 0.5317462314719279 2.460623040938616E-4 86-87 2.1810067862865004E-4 0.002516546291869039 0.0 0.5318748549490679 2.572469542799462E-4 88 2.2369300372169235E-4 0.0025948388431716314 0.0 0.531886039599254 2.572469542799462E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11950 0.0 52.023075 1 GTATCAA 22170 0.0 38.133038 1 TCAACGC 27105 0.0 30.453056 4 ATCAACG 27610 0.0 29.911623 3 TATCAAC 28185 0.0 29.47095 2 CAACGCA 28065 0.0 29.428823 5 AACGCAG 28570 0.0 28.954264 6 ACGCAGA 32400 0.0 25.491358 7 CGCAGAG 35085 0.0 23.540806 8 GTGGTAT 5680 0.0 23.098452 1 GTACATG 29345 0.0 22.917175 1 CTTATAC 10510 0.0 22.775772 1 TGGTATC 5570 0.0 22.462679 2 TACATGG 29490 0.0 22.185768 2 ACATGGG 29500 0.0 21.47137 3 GCAGAGT 38685 0.0 21.306978 9 TATACAC 13855 0.0 19.87957 3 GAGTACT 22530 0.0 19.814642 12-13 AGAGTAC 35000 0.0 19.25483 10-11 CAGAGTA 37575 0.0 19.14949 10-11 >>END_MODULE