##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139209_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11897954 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52585310045744 33.0 33.0 33.0 33.0 33.0 2 32.5572322770789 33.0 33.0 33.0 33.0 33.0 3 32.57821151434944 33.0 33.0 33.0 33.0 33.0 4 36.4847806606077 37.0 37.0 37.0 37.0 37.0 5 36.5097250333965 37.0 37.0 37.0 37.0 37.0 6 36.498890649602444 37.0 37.0 37.0 37.0 37.0 7 36.4758439980521 37.0 37.0 37.0 37.0 37.0 8 36.468737566139524 37.0 37.0 37.0 37.0 37.0 9 36.50804961928748 37.0 37.0 37.0 37.0 37.0 10-11 36.428683914898315 37.0 37.0 37.0 37.0 37.0 12-13 36.42964546677521 37.0 37.0 37.0 37.0 37.0 14-15 38.431372906635886 40.0 37.0 40.0 37.0 40.0 16-17 38.38275534600319 40.0 37.0 40.0 37.0 40.0 18-19 38.380313497597996 40.0 37.0 40.0 37.0 40.0 20-21 38.37391410573555 40.0 37.0 40.0 37.0 40.0 22-23 38.373109044728224 40.0 37.0 40.0 37.0 40.0 24-25 38.357369951735095 40.0 37.0 40.0 37.0 40.0 26-27 38.2447386999132 40.0 37.0 40.0 37.0 40.0 28-29 38.17425942379852 40.0 37.0 40.0 37.0 40.0 30-31 38.038822936423614 40.0 37.0 40.0 33.0 40.0 32-33 38.04214276997345 40.0 37.0 40.0 33.0 40.0 34-35 38.00156301249873 40.0 37.0 40.0 33.0 40.0 36-37 37.91642742187189 40.0 37.0 40.0 33.0 40.0 38-39 37.85249137078138 40.0 37.0 40.0 33.0 40.0 40-41 37.85217096361987 40.0 37.0 40.0 33.0 40.0 42-43 37.78418184773567 40.0 37.0 40.0 33.0 40.0 44-45 37.715763345936395 40.0 37.0 40.0 33.0 40.0 46-47 37.66951188430747 40.0 37.0 40.0 33.0 40.0 48-49 37.63147755564678 40.0 37.0 40.0 33.0 40.0 50-51 37.52632498606819 40.0 37.0 40.0 33.0 40.0 52-53 37.41057939297221 40.0 37.0 40.0 33.0 40.0 54-55 37.24766011075394 40.0 37.0 40.0 33.0 40.0 56-57 37.13086473239774 37.0 37.0 40.0 33.0 40.0 58-59 36.94820775654472 37.0 37.0 40.0 33.0 40.0 60-61 36.81725713093168 37.0 37.0 40.0 33.0 40.0 62-63 36.64667656781454 37.0 37.0 40.0 33.0 40.0 64-65 36.46150916611087 37.0 37.0 40.0 33.0 40.0 66-67 36.22758757667923 37.0 37.0 40.0 33.0 40.0 68-69 36.01160825651463 37.0 37.0 38.5 33.0 40.0 70-71 35.76188411009366 37.0 33.0 37.0 33.0 40.0 72-73 35.556266608426256 37.0 33.0 37.0 33.0 40.0 74-75 35.34757470482068 37.0 33.0 37.0 33.0 40.0 76-77 33.63040783463994 35.0 33.0 37.0 27.0 37.0 78-79 34.873303983229235 37.0 33.0 37.0 33.0 37.0 80-81 34.966096067946104 37.0 33.0 37.0 33.0 37.0 82-83 34.8225970542061 37.0 33.0 37.0 33.0 37.0 84-85 34.70199700014742 37.0 33.0 37.0 33.0 37.0 86-87 34.59910661420651 37.0 33.0 37.0 33.0 37.0 88-89 34.459488402853225 37.0 33.0 37.0 30.0 37.0 90-91 34.46318025929189 37.0 33.0 37.0 33.0 37.0 92-93 34.393078736717165 37.0 33.0 37.0 33.0 37.0 94-95 34.372058220401584 37.0 33.0 37.0 33.0 37.0 96-97 34.38975768800776 37.0 33.0 37.0 33.0 37.0 98-99 34.38388210776807 37.0 33.0 37.0 33.0 37.0 100 34.40514878369111 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 15.0 20 105.0 21 543.0 22 2086.0 23 5992.0 24 13407.0 25 26251.0 26 45228.0 27 71390.0 28 103888.0 29 143690.0 30 191980.0 31 253675.0 32 333379.0 33 444429.0 34 604804.0 35 877191.0 36 1531075.0 37 3497945.0 38 3659466.0 39 91412.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.902448101581165 19.845378457506225 14.032597537358104 24.21957590355451 2 15.02342335497347 20.708190668748593 41.17574332528097 23.092642650996968 3 18.436279044279377 25.753192523689368 29.999048575914816 25.81147985611644 4 12.805277277084784 17.927225134674416 37.755701526497745 31.511796061743052 5 13.966006256201696 37.273248829168445 34.94805913689026 13.8126857777396 6 30.640307374166053 37.01040902704014 18.43619678092228 13.913086817871529 7 27.128353328647936 32.15497387197833 22.486891443688553 18.229781355685187 8 24.950096461963124 36.29291220994803 20.584993016446358 18.17199831164249 9 25.903151079588977 16.53766689634201 20.646524604146226 36.91265741992279 10-11 24.882636092521427 26.306880262737476 28.086072847131334 20.724410797609767 12-13 25.680405935390983 23.851591271691493 28.093060549703825 22.374942243213695 14-15 22.753330724700085 25.07491065375092 25.788701463357523 26.383057158191477 16-17 22.48300422072568 28.24898717880402 26.33026653153979 22.937742068930504 18-19 22.561736244735858 27.31618394221393 27.953381732691184 22.168698080359025 20-21 23.45596061586792 26.405156139479917 27.894387124914903 22.244496119737256 22-23 23.208202286117135 26.523131394849525 27.642536214758888 22.62613010427445 24-25 22.961650121785016 26.72468515399898 27.796229330808792 22.517435393407215 26-27 22.834077619504356 26.868223331605222 27.774306516939212 22.523392531951206 28-29 22.820777563456566 26.804953143816203 27.767761987979007 22.60650730474823 30-31 23.22248843428887 26.505485804082586 27.714161202282323 22.55786455934623 32-33 22.93372002337047 26.67323101604039 27.683154606456878 22.709894354132267 34-35 23.03298664857634 26.64616074543712 27.718018514006836 22.602834091979705 36-37 23.060939287696854 26.70504650871929 27.521575937805213 22.71243826577864 38-39 22.828995370481408 26.731021225254914 27.674169922430398 22.76581348183328 40-41 23.00223723857902 26.512765114098997 27.703495515610292 22.78150213171169 42-43 22.939025163234106 26.60959644987781 27.504115731723534 22.94726265516455 44-45 22.86647202072658 26.758412259095078 27.376012948605 22.999102771573344 46-47 23.11929046962514 26.64995584428039 27.069281095577647 23.161472590516823 48-49 23.114693867644633 26.862389973254274 26.92936550408216 23.09355065501893 50-51 23.00953317049219 26.9315503899006 26.94744270361833 23.111473735988884 52-53 23.19576284391953 26.889726738560384 26.945724690880056 22.968785726640032 54-55 23.200547506605425 26.804822318068904 26.830477149330694 23.16415302599498 56-57 23.266772152056138 27.031020671751083 26.60702475177752 23.095182424415263 58-59 23.02053830090022 27.099180559222596 26.88302005079617 22.99726108908101 60-61 23.20729223420354 27.20760745252529 26.605748950282575 22.97935136298859 62-63 23.11212103845599 27.297063409979653 26.666052217216613 22.924763334347745 64-65 23.17474376169207 27.143405694798716 26.594967117958777 23.086883425550432 66-67 23.255842220416177 27.13082815173065 26.455502979593305 23.15782664825987 68-69 23.193103122977398 27.036690072656267 26.546358713606967 23.223848090759372 70-71 23.18344706512206 26.878896598946707 26.58490336744064 23.352752968490602 72-73 23.19619944410438 26.945353966283097 26.43129667550571 23.42714991410681 74-75 23.131212120088023 26.986365330500554 26.468627237749427 23.413795311662 76-77 23.231764519908225 26.976868903101135 26.4058724256307 23.38549415135994 78-79 23.147695792357958 26.988681196849946 26.427208098783726 23.43641491200837 80-81 23.183041202789266 27.022158947005494 26.43492597963642 23.359873870568823 82-83 23.3116061387627 26.93241052975531 26.563910039624012 23.19207329185798 84-85 23.31802630296887 26.918001575361476 26.49595372007202 23.268018401597633 86-87 23.171725275417813 27.100121425635287 26.45965251082023 23.268500788126666 88-89 23.29045823001889 26.960068195375484 26.4150446324682 23.33442894213743 90-91 23.281536399910262 27.03385312234966 26.4231857967888 23.261424680951276 92-93 23.32076859369046 27.009175694040742 26.512784634640806 23.157271077627996 94-95 23.112729659113473 27.096737216925 26.600492355131305 23.19004076883022 96-97 23.16376467099307 27.149068382866385 26.656100186368864 23.031066759771676 98-99 24.42308351460977 29.04456455517031 26.757494368602824 19.774857561617093 100 23.166489949920415 30.059708328799434 20.615417123220077 26.15838459806008 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2771.0 1 2437.0 2 3048.0 3 4182.0 4 5444.5 5 8635.0 6 11467.5 7 13390.0 8 14622.5 9 14618.5 10 13699.0 11 12478.0 12 13328.5 13 17341.0 14 26994.5 15 40805.5 16 52559.0 17 59867.5 18 62038.0 19 58926.0 20 52312.0 21 44758.0 22 39490.5 23 39140.0 24 43591.5 25 53175.0 26 66995.0 27 83279.5 28 102569.5 29 124867.0 30 147538.5 31 169974.0 32 194580.5 33 219628.0 34 245060.0 35 269665.5 36 296032.0 37 322198.5 38 344371.0 39 365654.0 40 386093.5 41 404626.0 42 418685.5 43 430667.0 44 444723.5 45 466361.0 46 492131.0 47 517800.0 48 527294.5 49 524883.0 50 525268.0 51 520131.5 52 496999.5 53 464062.0 54 440503.0 55 417888.0 56 391413.0 57 359230.5 58 323430.0 59 284773.0 60 241304.5 61 203762.0 62 167875.0 63 135538.5 64 111084.5 65 87687.5 66 69427.5 67 51866.5 68 35442.0 69 25897.5 70 18554.0 71 12070.0 72 8317.0 73 6019.5 74 4470.0 75 3173.5 76 1972.5 77 1108.0 78 803.5 79 618.0 80 408.0 81 256.0 82 192.0 83 120.5 84 66.0 85 41.0 86 27.5 87 24.0 88 20.5 89 15.5 90 11.5 91 9.0 92 6.5 93 3.5 94 2.0 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.0085767687452817E-4 7 0.0 8 0.0 9 0.0 10-11 0.003786365285997912 12-13 1.2607209609316022E-5 14-15 0.002357548196942096 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 233.0 20-21 725.0 22-23 1738.0 24-25 4336.0 26-27 4939.0 28-29 7907.0 30-31 19245.0 32-33 23945.0 34-35 34266.0 36-37 49709.0 38-39 58383.0 40-41 63267.0 42-43 76581.0 44-45 91637.0 46-47 89380.0 48-49 80575.0 50-51 69915.0 52-53 66598.0 54-55 75566.0 56-57 83629.0 58-59 85376.0 60-61 87830.0 62-63 88182.0 64-65 94007.0 66-67 100864.0 68-69 94154.0 70-71 91758.0 72-73 87229.0 74-75 91084.0 76-77 88670.0 78-79 95810.0 80-81 99373.0 82-83 96550.0 84-85 97610.0 86-87 104118.0 88-89 111194.0 90-91 118158.0 92-93 124717.0 94-95 152217.0 96-97 438322.0 98-99 744737.0 100-101 7903420.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.59173401022176 #Duplication Level Percentage of deduplicated Percentage of total 1 88.44442322292466 73.04778277515274 2 7.93878607898343 13.113562163989018 3 1.972211174655773 4.886650222474698 4 0.7306253076742145 2.4137444429026065 5 0.3324276208536461 1.3727886819597592 6 0.1841836185686113 0.9127226660315331 7 0.11078376151061138 0.640487607433538 8 0.06456874955924874 0.42662759911760767 9 0.04222274646119363 0.31385248604135424 >10 0.1722138875382305 2.3073434059680817 >50 0.005761895828666164 0.31590134525926133 >100 0.0017722344023017513 0.2378625455188326 >500 1.9701039460178008E-5 0.010674058150978577 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.404806406210682E-6 8.404806406210682E-6 2 0.0 5.042883843726409E-5 0.0 1.6809612812421364E-5 8.404806406210682E-6 3 0.0 5.883364484347477E-5 0.0 1.6809612812421364E-5 8.404806406210682E-6 4 0.0 1.428817089055816E-4 0.0 3.361922562484273E-5 8.404806406210682E-6 5 0.0 1.6809612812421362E-4 0.0 4.2024032031053404E-5 8.404806406210682E-6 6 0.0 1.6809612812421362E-4 0.0 4.2024032031053404E-5 8.404806406210682E-6 7 0.0 1.8490574093663498E-4 0.0 5.042883843726409E-5 8.404806406210682E-6 8 0.0 2.0171535374905635E-4 0.0 5.042883843726409E-5 8.404806406210682E-6 9 0.0 4.034307074981127E-4 0.0 9.245287046831749E-5 8.404806406210682E-6 10-11 0.0 4.034307074981127E-4 0.0 1.0506008007763352E-4 8.404806406210682E-6 12-13 0.0 4.118355139043234E-4 0.0 1.0926248328073886E-4 8.404806406210682E-6 14-15 0.0 6.303604804658011E-4 0.0 1.2607209609316023E-4 1.2607209609316022E-5 16-17 0.0 6.639797060906438E-4 0.0 1.5128651531179228E-4 1.6809612812421364E-5 18-19 0.0 7.270157541372239E-4 0.0 2.1852496656147772E-4 1.6809612812421364E-5 20-21 0.0 8.026590117931201E-4 0.0 2.5214419218632045E-4 1.6809612812421364E-5 22-23 0.0 8.825046726521216E-4 0.0 2.773586114049525E-4 1.6809612812421364E-5 24-25 0.0 9.455407206987017E-4 0.0 3.025730306235845E-4 1.6809612812421364E-5 26-27 0.0 9.833623495266498E-4 0.0 3.8241869148258596E-4 1.6809612812421364E-5 28-29 0.0 9.917671559328603E-4 0.0 8.278734310117521E-4 1.6809612812421364E-5 30-31 0.0 0.0011388512680415475 0.0 0.0022650953264737785 1.6809612812421364E-5 32-33 0.0 0.0011640656872601795 0.0 0.006068270225284111 1.6809612812421364E-5 34-35 0.0 0.0013279594121812877 0.0 0.011127963681822943 1.6809612812421364E-5 36-37 0.0 0.0015002579435086066 0.0 0.01958319892647089 1.6809612812421364E-5 38-39 0.0 0.001567496394758292 0.0 0.04041030920106095 1.6809612812421364E-5 40-41 0.0 0.0017818189581166645 0.0 0.06254436687181678 1.6809612812421364E-5 42-43 0.0 0.0018196405869446125 0.0 0.07661821519901657 1.6809612812421364E-5 44-45 0.0 0.002012951134287458 0.0 0.09398254523424784 1.6809612812421364E-5 46-47 0.0 0.0021684400528023556 0.0 0.11121239836697974 1.6809612812421364E-5 48-49 0.0 0.0021684400528023556 0.0 0.12767741411674646 1.6809612812421364E-5 50-51 0.0 0.002370155406551412 0.0 0.14344062853159462 1.6809612812421364E-5 52-53 0.0 0.0023869650193638335 0.0 0.1837290680397655 2.1012016015526702E-5 54-55 0.0 0.002428989051394887 0.0 0.23233826589008497 2.5214419218632044E-5 56-57 0.0 0.0024878226962383614 0.0 0.2817417179457914 2.9416822421737385E-5 58-59 0.0 0.002504632309050783 0.0 0.3142683187378267 3.361922562484273E-5 60-61 4.202403203105341E-6 0.002542453937878731 0.0 0.33535597801100925 4.2024032031053404E-5 62-63 8.404806406210682E-6 0.002597085179519101 0.0 0.34933317106453765 4.2024032031053404E-5 64-65 8.404806406210682E-6 0.0029080630165488957 0.0 0.3544012693274827 4.2024032031053404E-5 66-67 8.404806406210682E-6 0.0029668966613923707 0.0 0.35910796091496067 4.2024032031053404E-5 68-69 8.404806406210682E-6 0.003063551935063793 0.0 0.36381465250243866 4.6226435234158746E-5 70-71 8.404806406210682E-6 0.0031055759670948467 0.0 0.3677733163197639 5.042883843726409E-5 72-73 8.404806406210682E-6 0.0031265879831103736 0.0 0.37105119081818605 7.564325765589614E-5 74-75 8.404806406210682E-6 0.0032022312407662696 0.0 0.3737785504970014 7.564325765589614E-5 76-77 8.404806406210682E-6 0.0033241009336563245 0.0 0.37642606451495775 7.984566085900147E-5 78-79 8.404806406210682E-6 0.003403946594515326 0.0 0.37834656277877693 8.404806406210681E-5 80-81 8.404806406210682E-6 0.003416553804124642 0.0 0.3790357569040862 8.404806406210681E-5 82-83 1.2607209609316022E-5 0.003429161013733958 0.0 0.3795316404820526 8.404806406210681E-5 84-85 1.6809612812421364E-5 0.0034459706265463795 0.0 0.37978378467423896 8.404806406210681E-5 86-87 1.6809612812421364E-5 0.0035216138842022755 0.0 0.3799350711895507 8.404806406210681E-5 88 1.6809612812421364E-5 0.0036560907867016464 0.0 0.3799812976247849 8.404806406210681E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15155 0.0 53.39054 1 GTATCAA 27400 0.0 37.458584 1 TCAACGC 33460 0.0 29.942356 4 ATCAACG 34060 0.0 29.439411 3 CAACGCA 34455 0.0 29.105335 5 TATCAAC 34965 0.0 28.911179 2 AACGCAG 35385 0.0 28.425484 6 ACGCAGA 40635 0.0 24.668242 7 CGCAGAG 43965 0.0 22.800106 8 GTACATG 40500 0.0 22.26218 1 TACATGG 40530 0.0 21.937914 2 CTTATAC 11680 0.0 21.87636 1 ACATGGG 40855 0.0 21.100073 3 GCAGAGT 48725 0.0 20.440899 9 GAGTACT 25505 0.0 20.054241 12-13 GTGGTAT 7295 0.0 19.576916 1 TATACAC 15390 0.0 18.97853 3 CATGGGG 31255 0.0 18.924553 4 CAGAGTA 47275 0.0 18.915325 10-11 TGGTATC 7215 0.0 18.601576 2 >>END_MODULE