##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139207_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8908767 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62299844636188 33.0 33.0 33.0 33.0 33.0 2 32.62339681798839 33.0 33.0 33.0 33.0 33.0 3 32.62296028170902 33.0 33.0 33.0 33.0 33.0 4 36.54189182408744 37.0 37.0 37.0 37.0 37.0 5 36.570198210369625 37.0 37.0 37.0 37.0 37.0 6 36.58046427749205 37.0 37.0 37.0 37.0 37.0 7 36.55354506409248 37.0 37.0 37.0 37.0 37.0 8 36.547258111027034 37.0 37.0 37.0 37.0 37.0 9 36.57857288219571 37.0 37.0 37.0 37.0 37.0 10-11 36.52959438719185 37.0 37.0 37.0 37.0 37.0 12-13 36.51536278813892 37.0 37.0 37.0 37.0 37.0 14-15 38.588806228740744 40.0 37.0 40.0 37.0 40.0 16-17 38.528965063291025 40.0 37.0 40.0 37.0 40.0 18-19 38.56429324057976 40.0 37.0 40.0 37.0 40.0 20-21 38.56848447169461 40.0 37.0 40.0 37.0 40.0 22-23 38.56446453054756 40.0 37.0 40.0 37.0 40.0 24-25 38.560459847549154 40.0 37.0 40.0 37.0 40.0 26-27 38.43629365244688 40.0 37.0 40.0 37.0 40.0 28-29 38.38318350945161 40.0 37.0 40.0 37.0 40.0 30-31 38.22337608502339 40.0 37.0 40.0 37.0 40.0 32-33 38.23188574375038 40.0 37.0 40.0 37.0 40.0 34-35 38.20561991458993 40.0 37.0 40.0 37.0 40.0 36-37 38.1596794272472 40.0 37.0 40.0 37.0 40.0 38-39 38.10738919795516 40.0 37.0 40.0 35.0 40.0 40-41 38.07857166160728 40.0 37.0 40.0 33.0 40.0 42-43 38.031887954747674 40.0 37.0 40.0 33.0 40.0 44-45 37.955582888958006 40.0 37.0 40.0 33.0 40.0 46-47 37.806005421657844 40.0 37.0 40.0 33.0 40.0 48-49 37.82132760828168 40.0 37.0 40.0 33.0 40.0 50-51 37.78910351792967 40.0 37.0 40.0 33.0 40.0 52-53 37.731973601080234 40.0 37.0 40.0 33.0 40.0 54-55 37.5703247672635 40.0 37.0 40.0 33.0 40.0 56-57 37.45993444768407 40.0 37.0 40.0 33.0 40.0 58-59 37.336952686685905 38.5 37.0 40.0 33.0 40.0 60-61 37.17665607071342 37.0 37.0 40.0 33.0 40.0 62-63 37.00971092571912 37.0 37.0 40.0 33.0 40.0 64-65 36.8386814326899 37.0 37.0 40.0 33.0 40.0 66-67 36.63788475805328 37.0 37.0 40.0 33.0 40.0 68-69 36.429144512109424 37.0 37.0 40.0 33.0 40.0 70-71 36.198356056762165 37.0 37.0 38.5 33.0 40.0 72-73 35.97270290496826 37.0 37.0 37.0 33.0 40.0 74-75 35.776514227452125 37.0 37.0 37.0 33.0 40.0 76-77 34.093288167869446 35.0 33.0 37.0 30.0 37.0 78-79 35.27582973480064 37.0 33.0 37.0 33.0 37.0 80-81 35.32964663437379 37.0 33.0 37.0 33.0 37.0 82-83 35.18589922826905 37.0 33.0 37.0 33.0 37.0 84-85 35.058486726935655 37.0 33.0 37.0 33.0 37.0 86-87 34.97363773128285 37.0 33.0 37.0 33.0 37.0 88-89 34.842053942205155 37.0 33.0 37.0 33.0 37.0 90-91 34.698719700693545 37.0 33.0 37.0 33.0 37.0 92-93 34.70011113134386 37.0 33.0 37.0 33.0 37.0 94-95 34.7565321080598 37.0 33.0 37.0 33.0 37.0 96-97 34.76480638551696 37.0 33.0 37.0 33.0 37.0 98-99 34.770738867551415 37.0 33.0 37.0 33.0 37.0 100 34.76082695936854 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 4.0 19 14.0 20 79.0 21 335.0 22 1206.0 23 3453.0 24 7794.0 25 15329.0 26 26586.0 27 42011.0 28 61766.0 29 87614.0 30 117960.0 31 157628.0 32 209121.0 33 282025.0 34 389842.0 35 569695.0 36 1014563.0 37 2558592.0 38 3263068.0 39 100079.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.00095254483589 20.14854580886446 14.389690514972497 23.46081113132715 2 14.672142620858756 21.120060722207686 41.906147057162904 22.301649599770652 3 18.111743185111926 26.77231316073257 30.557000761160324 24.55894289299518 4 12.390278026128644 18.29704379966386 38.84549904605205 30.467179128155447 5 13.184001781615795 38.00802063854628 35.30962253250085 13.49835504733708 6 29.384335625087694 37.94108039848464 18.976915953416583 13.697668023011083 7 26.182579474802743 33.058951929037995 23.18299490827406 17.575473687885204 8 24.458401482494715 36.53096999842963 21.174928023148436 17.835700495927213 9 26.039793394482853 16.598585774795946 21.100275964176856 36.261344866544356 10-11 24.322670207839206 26.78596215234335 28.657813248874447 20.233554390943002 12-13 25.34113875492282 24.58811069772297 28.752492629449762 21.318257917904447 14-15 22.420860235622065 25.685534078627203 26.765812798237658 25.127792887513074 16-17 21.57940038166898 28.81841561239619 27.393319412214957 22.20886459371987 18-19 21.56557691990373 27.686867329676485 29.505626311699473 21.24192943872031 20-21 22.650754031141883 26.775822869752297 29.346570327410237 21.226852771695583 22-23 22.342973137207597 26.821345686819324 29.198890682942398 21.636790493030677 24-25 21.98098392071339 27.067159390412414 29.31018132857431 21.64167536029989 26-27 21.873033019822273 27.19716776198758 29.263536783561435 21.666262434628713 28-29 21.713325816887995 27.215749311356223 29.308432893078233 21.76249197867754 30-31 22.146026231040974 27.110537787815307 29.12381954830538 21.619616432838335 32-33 21.8825766180145 27.25772962683129 29.094917928187748 21.76477582696646 34-35 22.011395509156 27.314677107546427 29.104836207860142 21.569091175437435 36-37 22.038419327778698 27.236220194430782 28.951030603928373 21.77432987386215 38-39 21.824078298382787 27.32659084828975 29.056850997191702 21.792479856135763 40-41 22.037840326000406 27.197960504097264 28.979066949811266 21.78513222009106 42-43 21.98162769902911 27.307429843960882 28.662821572259496 22.048120884750507 44-45 22.04400488011535 27.485808757210055 28.420290359390044 22.049896003284548 46-47 22.25087623824996 27.498553369116014 27.984549368579835 22.26602102405419 48-49 22.155499354707093 27.68626818719971 27.856455589363847 22.301776868729352 50-51 22.145977741703025 27.822636821452207 27.729983069173574 22.301402367671198 52-53 22.315458520698854 27.699669579524794 27.680863143945583 22.30400875583077 54-55 22.307961508867237 27.636842398015915 27.68737884305085 22.36781725006599 56-57 22.29427646123646 27.771810034633543 27.534517182458185 22.399396321671812 58-59 22.20738522127211 27.80064586019146 27.666567110197356 22.32540180833908 60-61 22.33375422968928 27.84424294560626 27.556842124823955 22.2651606998805 62-63 22.235567075836375 27.935751725464748 27.55092508491775 22.277756113781134 64-65 22.221651803471943 27.864160478808646 27.467274294270812 22.446913423448596 66-67 22.30655252359263 27.870101147477 27.334878602701878 22.48846772622849 68-69 22.29544631923582 27.809646320808678 27.435311270042558 22.459596089912946 70-71 22.31063849127109 27.623112795019246 27.473677186509672 22.5925715272 72-73 22.381835527500172 27.60759714328429 27.358619586300843 22.651947742914697 74-75 22.27684083782387 27.750209285709833 27.35049352147698 22.622456354989318 76-77 22.430653814658253 27.635324374135138 27.30797339739921 22.626048413807396 78-79 22.424949360813557 27.608018226615588 27.257790239882585 22.709242172688267 80-81 22.408502531234113 27.700078846145587 27.259541761658056 22.631876860962237 82-83 22.455470390267028 27.618096948861172 27.346626461064872 22.57980619980693 84-85 22.564824343134422 27.603405000760862 27.273133847137288 22.55863680896743 86-87 22.411403130127866 27.58917417782562 27.40386191051927 22.595560781527237 88-89 22.510313210314393 27.54893223475852 27.314826482201926 22.625928072725156 90-91 22.596134977063652 27.562096611067222 27.28357779451594 22.558190617353187 92-93 22.61892793554103 27.448420979041245 27.39654057971902 22.5361105056987 94-95 22.452636861996712 27.468030597451943 27.51455718945414 22.5647753510972 96-97 22.585886408289984 27.561580717694223 27.52049327202742 22.332039601988374 98-99 23.653301593737535 29.47197875620291 27.70653081422091 19.168188835838645 100 22.524356992605536 30.439997625678362 21.586464821228684 25.449180560487424 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1928.0 1 1768.5 2 2674.0 3 3980.0 4 5458.0 5 9272.0 6 12551.0 7 14629.0 8 15742.0 9 15342.0 10 14234.5 11 13021.0 12 14172.0 13 18733.0 14 29726.0 15 45425.0 16 58626.5 17 67006.0 18 69238.0 19 64870.5 20 56423.0 21 47164.5 22 40470.5 23 38522.5 24 41804.0 25 50464.5 26 63441.5 27 78575.5 28 95261.5 29 114619.0 30 135463.5 31 157074.0 32 181573.5 33 205967.5 34 228828.5 35 251455.5 36 274493.5 37 294807.5 38 309526.0 39 321684.5 40 332349.0 41 340533.5 42 347318.5 43 354845.0 44 360880.0 45 366549.5 46 369644.0 47 369279.0 48 371313.5 49 367145.5 50 356279.5 51 345649.0 52 332016.0 53 315492.5 54 297617.0 55 275811.5 56 252240.0 57 228208.5 58 203247.5 59 176549.5 60 148342.0 61 121957.0 62 96895.5 63 74911.0 64 56920.5 65 43161.5 66 32793.5 67 24967.5 68 19192.0 69 13654.0 70 9359.0 71 6819.5 72 4819.5 73 3399.5 74 2376.5 75 1622.5 76 1087.0 77 688.5 78 434.0 79 298.0 80 212.5 81 152.5 82 121.0 83 85.5 84 53.5 85 35.5 86 25.0 87 18.5 88 13.0 89 8.0 90 7.0 91 7.0 92 5.0 93 2.5 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.9082326431929357E-4 7 0.0 8 0.0 9 2.2449795802269834E-5 10-11 0.0068079005770383255 12-13 2.2449795802269834E-5 14-15 0.006768613434384355 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 149.0 20-21 554.0 22-23 1212.0 24-25 4136.0 26-27 3846.0 28-29 7174.0 30-31 18163.0 32-33 22898.0 34-35 31774.0 36-37 45903.0 38-39 54486.0 40-41 59923.0 42-43 73410.0 44-45 88703.0 46-47 84950.0 48-49 75435.0 50-51 63817.0 52-53 58774.0 54-55 63638.0 56-57 70007.0 58-59 70173.0 60-61 70922.0 62-63 70698.0 64-65 74127.0 66-67 80874.0 68-69 80115.0 70-71 78828.0 72-73 75664.0 74-75 77480.0 76-77 77166.0 78-79 82260.0 80-81 84366.0 82-83 82288.0 84-85 81997.0 86-87 85714.0 88-89 92644.0 90-91 96074.0 92-93 99186.0 94-95 108418.0 96-97 289552.0 98-99 527011.0 100-101 5694258.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.79408927223665 #Duplication Level Percentage of deduplicated Percentage of total 1 89.26087218627782 75.68794364680947 2 7.611111594976124 12.907545520907219 3 1.797164137124653 4.5716668884063 4 0.6321680996681377 2.1441647311328107 5 0.27582474422271985 1.1694153992556573 6 0.14660565691673638 0.7458775896247587 7 0.08194787783425235 0.4864086968123556 8 0.05005652009025559 0.3395597626552512 9 0.03244938927828157 0.24763647701629496 >10 0.10842521456679421 1.4208684603185737 >50 0.0027028326924563636 0.14815381448631743 >100 6.073330031751397E-4 0.09126993625809592 >500 6.441334854994675E-5 0.03948907631687993 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1224897901134915E-5 0.0 2 0.0 0.0 0.0 2.244979580226983E-5 0.0 3 0.0 0.0 0.0 2.244979580226983E-5 1.1224897901134915E-5 4 0.0 0.0 0.0 6.73493874068095E-5 1.1224897901134915E-5 5 0.0 0.0 0.0 6.73493874068095E-5 2.244979580226983E-5 6 0.0 0.0 0.0 7.857428530794441E-5 2.244979580226983E-5 7 0.0 1.1224897901134915E-5 0.0 1.0102408111021424E-4 4.489959160453966E-5 8 0.0 1.1224897901134915E-5 0.0 1.0102408111021424E-4 6.73493874068095E-5 9 0.0 4.489959160453966E-5 0.0 1.4592367271475392E-4 6.73493874068095E-5 10-11 0.0 4.489959160453966E-5 0.0 1.4592367271475392E-4 6.73493874068095E-5 12-13 0.0 4.489959160453966E-5 0.0 1.5714857061588882E-4 7.296183635737696E-5 14-15 0.0 1.1786142796191661E-4 0.0 1.9082326431929357E-4 1.2908632586305154E-4 16-17 0.0 1.5714857061588882E-4 0.0 2.469477538249681E-4 1.34698774813619E-4 18-19 0.0 1.6837346851702372E-4 0.0 2.806224475283729E-4 1.4592367271475392E-4 20-21 0.0 1.7959836641815864E-4 0.0 3.591967328363173E-4 1.6837346851702374E-4 22-23 0.0 2.0204816222042847E-4 0.0 4.6022081394653155E-4 1.6837346851702374E-4 24-25 0.0 2.2449795802269832E-4 0.0 0.0010046283621515748 1.6837346851702374E-4 26-27 0.0 2.3572285592383322E-4 0.0 0.003053172229108697 1.6837346851702374E-4 28-29 0.0 2.3572285592383322E-4 0.0 0.00832326179369154 1.852108153687261E-4 30-31 0.0 2.69397549627238E-4 0.0 0.010568241373918524 1.9082326431929357E-4 32-33 0.0 2.69397549627238E-4 0.0 0.015714857061588882 2.0766061117099595E-4 34-35 0.0 3.1429714123177763E-4 0.0 0.022371221516961887 2.2449795802269832E-4 36-37 0.0 3.591967328363173E-4 0.0 0.03302926207408949 2.2449795802269832E-4 38-39 0.0 3.591967328363173E-4 0.0 0.05977819377249399 2.4133530487440067E-4 40-41 0.0 3.9287142653972204E-4 0.0 0.08897415321334591 2.469477538249681E-4 42-43 0.0 4.097087733914244E-4 0.0 0.10740543556700943 2.525602027755356E-4 44-45 0.0 4.995079566005037E-4 0.0 0.12901897647564473 2.581726517261031E-4 46-47 0.0 5.612448950567458E-4 0.0 0.1509075273828578 2.581726517261031E-4 48-49 0.0 5.612448950567458E-4 0.0 0.17134245401187392 2.806224475283729E-4 50-51 0.0 6.398191803646902E-4 0.0 0.19090745105355209 2.8623489647894036E-4 52-53 0.0 6.398191803646902E-4 0.0 0.2401847528395344 3.0868469228121016E-4 54-55 0.0 6.566565272163925E-4 0.0 0.29666843907804524 3.1429714123177763E-4 56-57 0.0 6.959436698703648E-4 0.0 0.3526077177683511 3.255220391329126E-4 58-59 0.0 7.071685677714997E-4 0.0 0.3934495087816305 3.367469370340475E-4 60-61 0.0 7.183934656726346E-4 0.0 0.42339753638185845 3.479718349351824E-4 62-63 0.0 7.35230812524337E-4 0.0 0.4453253744317255 3.591967328363173E-4 64-65 0.0 7.857428530794441E-4 0.0 0.4517516284801253 3.591967328363173E-4 66-67 0.0 7.913553020300116E-4 0.0 0.4574931637565558 3.6480918178688476E-4 68-69 0.0 8.081926488817139E-4 0.0 0.463588283316872 3.928714265397221E-4 70-71 0.0 8.194175467828488E-4 0.0 0.46882469818775147 4.2093367129255937E-4 72-73 0.0 8.306424446839838E-4 0.0 0.4728768863300612 4.265461202431268E-4 74-75 0.0 8.474797915356861E-4 0.0 0.475980570599725 4.321585691936942E-4 76-77 0.0 8.643171383873884E-4 0.0 0.47901129303303136 4.377710181442617E-4 78-79 0.0 8.867669341896583E-4 0.0 0.48102054975733455 4.4338346709482917E-4 80-81 0.0 8.867669341896583E-4 0.0 0.48161546934609467 4.4899591604539665E-4 82-83 0.0 8.923793831402258E-4 0.0 0.4820644652621401 4.6022081394653155E-4 84-85 0.0 9.036042810413607E-4 0.0 0.4822721258733111 4.6583326289709897E-4 86-87 0.0 9.092167299919281E-4 0.0 0.48239559975022356 4.8267060974880135E-4 88 0.0 9.877910152998725E-4 0.0 0.48241243709707526 4.938955076499362E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14525 0.0 55.3075 1 GTATCAA 26895 0.0 37.466972 1 TCAACGC 33620 0.0 29.64645 4 ATCAACG 33975 0.0 29.334866 3 TATCAAC 34525 0.0 29.002615 2 CAACGCA 34680 0.0 28.741428 5 AACGCAG 35760 0.0 27.93268 6 ACGCAGA 40205 0.0 24.802307 7 CGCAGAG 40655 0.0 24.517347 8 GTGGTAT 6100 0.0 24.045687 1 TGGTATC 5920 0.0 23.416231 2 GTACATG 35920 0.0 22.600777 1 TACATGG 36240 0.0 21.921604 2 GCAGAGT 46545 0.0 21.308384 9 ACATGGG 36755 0.0 21.003153 3 GAGTACT 26765 0.0 20.133894 12-13 CAGAGTA 45625 0.0 19.488369 10-11 CATGGGG 23395 0.0 19.226938 4 AGAGTAC 42985 0.0 18.648317 10-11 GTACTTT 28930 0.0 18.590832 14-15 >>END_MODULE