##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139204_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7854729 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58981130984914 33.0 33.0 33.0 33.0 33.0 2 32.59222692469721 33.0 33.0 33.0 33.0 33.0 3 32.58695315904597 33.0 33.0 33.0 33.0 33.0 4 36.48855893054999 37.0 37.0 37.0 37.0 37.0 5 36.516290504739246 37.0 37.0 37.0 37.0 37.0 6 36.516065290094666 37.0 37.0 37.0 37.0 37.0 7 36.49140256780342 37.0 37.0 37.0 37.0 37.0 8 36.4734987037745 37.0 37.0 37.0 37.0 37.0 9 36.50938090925862 37.0 37.0 37.0 37.0 37.0 10-11 36.46497797696139 37.0 37.0 37.0 37.0 37.0 12-13 36.395603591161446 37.0 37.0 37.0 37.0 37.0 14-15 38.44348589238406 40.0 37.0 40.0 37.0 40.0 16-17 38.40315070067981 40.0 37.0 40.0 37.0 40.0 18-19 38.409806436351914 40.0 37.0 40.0 37.0 40.0 20-21 38.401465581738485 40.0 37.0 40.0 37.0 40.0 22-23 38.39385318861139 40.0 37.0 40.0 37.0 40.0 24-25 38.39378244741275 40.0 37.0 40.0 37.0 40.0 26-27 38.24782153663243 40.0 37.0 40.0 37.0 40.0 28-29 38.16834772044467 40.0 37.0 40.0 37.0 40.0 30-31 38.13113723941045 40.0 37.0 40.0 37.0 40.0 32-33 38.04832798186439 40.0 37.0 40.0 33.0 40.0 34-35 38.00862934639342 40.0 37.0 40.0 33.0 40.0 36-37 37.96626684136149 40.0 37.0 40.0 33.0 40.0 38-39 37.90503933661665 40.0 37.0 40.0 33.0 40.0 40-41 37.861522661043324 40.0 37.0 40.0 33.0 40.0 42-43 37.76019348535431 40.0 37.0 40.0 33.0 40.0 44-45 37.700953215148864 40.0 37.0 40.0 33.0 40.0 46-47 37.65120440031458 40.0 37.0 40.0 33.0 40.0 48-49 37.606230369524155 40.0 37.0 40.0 33.0 40.0 50-51 37.51902673470771 40.0 37.0 40.0 33.0 40.0 52-53 37.39999713940425 40.0 37.0 40.0 33.0 40.0 54-55 37.17225259963098 38.5 37.0 40.0 33.0 40.0 56-57 36.972374028277 37.0 37.0 40.0 33.0 40.0 58-59 36.880642538867846 37.0 37.0 40.0 33.0 40.0 60-61 36.728005486960754 37.0 37.0 40.0 33.0 40.0 62-63 36.53111930292337 37.0 37.0 40.0 33.0 40.0 64-65 36.36520203378615 37.0 37.0 40.0 33.0 40.0 66-67 36.13088796454026 37.0 37.0 40.0 33.0 40.0 68-69 35.90555090997066 37.0 35.0 38.5 33.0 40.0 70-71 35.64344362454227 37.0 33.0 37.0 33.0 40.0 72-73 35.44338222642252 37.0 33.0 37.0 33.0 40.0 74-75 35.28117116596012 37.0 33.0 37.0 33.0 40.0 76-77 33.46574551941829 35.0 33.0 37.0 27.0 37.0 78-79 34.77032563400577 37.0 33.0 37.0 33.0 37.0 80-81 34.87013251303987 37.0 33.0 37.0 33.0 37.0 82-83 34.77652744899717 37.0 33.0 37.0 33.0 37.0 84-85 34.635185557240035 37.0 33.0 37.0 33.0 37.0 86-87 34.52503333678918 37.0 33.0 37.0 33.0 37.0 88-89 34.46321777478123 37.0 33.0 37.0 33.0 37.0 90-91 34.38557088677822 37.0 33.0 37.0 30.0 37.0 92-93 34.31228663620675 37.0 33.0 37.0 27.0 37.0 94-95 34.30582545943552 37.0 33.0 37.0 27.0 37.0 96-97 34.32484419987371 37.0 33.0 37.0 30.0 37.0 98-99 34.332255574964165 37.0 33.0 37.0 30.0 37.0 100 34.33758457802979 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 10.0 20 67.0 21 334.0 22 1286.0 23 3646.0 24 8516.0 25 17208.0 26 29806.0 27 46910.0 28 69403.0 29 95988.0 30 129293.0 31 172066.0 32 227047.0 33 302550.0 34 414613.0 35 602654.0 36 1058655.0 37 2365546.0 38 2265865.0 39 43264.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.59180679562592 19.321417709000528 13.971226760337627 24.115548735035926 2 15.31356460547525 20.414822713807183 40.95056621304185 23.321046467675714 3 18.976631784495684 25.23952131257488 29.40519017269724 26.378656730232198 4 13.041608437413945 17.478387860357756 37.26435374154856 32.21564996067974 5 14.350794279471641 37.0193802994349 34.45370298580638 14.176122435287072 6 31.502096571644493 36.34930452079308 18.105159083802775 14.043439823759652 7 27.963752791471226 31.776895167229828 21.954252018115454 18.305100023183485 8 25.43434662099736 36.13025987274672 19.97566052246997 18.459732983785944 9 26.207664198217408 16.518851255084677 20.32943466286361 36.94404988383431 10-11 25.40663918085692 26.189791877968045 27.48561240908749 20.91795653208754 12-13 26.1466039501285 23.631188510990196 27.650733989869643 22.571473549011667 14-15 23.118632475106665 24.74447141740992 25.532919781815 26.603976325668416 16-17 22.829991970442265 27.971588835209975 26.00949695400058 23.188922240347186 18-19 22.855206080311618 26.966048096630708 27.74372610436337 22.435019718694306 20-21 23.8616033688662 26.034653712413956 27.719220493902103 22.384522424817735 22-23 23.581860728087076 26.03091492205251 27.511897100418587 22.875327249441824 24-25 23.310251369438305 26.207393572360328 27.696637434068737 22.78571762413263 26-27 23.119036491944637 26.265248290285065 27.720041858532607 22.89567335923769 28-29 23.137087577797118 26.28553535681023 27.670628591003698 22.90674847438895 30-31 23.47450402259309 26.00517641447534 27.59561987850283 22.924699684428735 32-33 23.236699434124972 26.216773684273363 27.4898249051794 23.056701976422268 34-35 23.38728742487592 26.295200339934755 27.472368311251323 22.845143923938 36-37 23.523754479428753 26.15592238258888 27.29562672394798 23.024696414034384 38-39 23.170443787598575 26.456653444878825 27.402875410946592 22.970027356576004 40-41 23.414151235831792 26.221618651772573 27.336636319696915 23.02759379269872 42-43 23.279433997339343 26.33265516239156 27.109280588279372 23.278630251989725 44-45 23.23998843121078 26.406048205765398 27.008142803236 23.345820559787818 46-47 23.447710617231074 26.380862550953033 26.744816516602576 23.426610315213317 48-49 23.462694856148254 26.65112066980927 26.51979988748837 23.3663845865541 50-51 23.424576967067456 26.68986480072595 26.546580255608742 23.338977976597853 52-53 23.699417762447826 26.56404466320489 26.447715889633947 23.288821684713334 54-55 23.68146960604859 26.50946106154676 26.386488880784892 23.42258045161976 56-57 23.663135405715522 26.794033099850452 26.162808998814153 23.38002249561988 58-59 23.46758717715886 26.766630739874525 26.42885607041886 23.336926012547757 60-61 23.59978764978749 26.717813428524874 26.31432619767409 23.368072724013548 62-63 23.564723991994796 26.803917342156268 26.331223880170928 23.300134785678008 64-65 23.645088502785303 26.689071998099863 26.29189348180922 23.373946017305617 66-67 23.704017243112396 26.75196092020917 26.090620880788478 23.45340095588995 68-69 23.642073138968968 26.675331211236397 26.225473172912068 23.457122476882567 70-71 23.627120169607927 26.543554295020506 26.20570406531959 23.62362147005198 72-73 23.630593972947167 26.60871211294892 26.06558624643919 23.695107667664725 74-75 23.477254216569115 26.669908805017943 26.15830223600191 23.694534742411033 76-77 23.608708198514254 26.673548406448933 26.070768858483483 23.64697453655333 78-79 23.473113978536812 26.673431359619727 26.175270941938084 23.678183719905384 80-81 23.572305210628468 26.659366940358776 26.144385244997704 23.623942604015056 82-83 23.669036833274674 26.561648393475302 26.305500674502863 23.46381409874716 84-85 23.66729114217423 26.580106601048893 26.22205044567984 23.53055181109704 86-87 23.439431494449035 26.732628119173068 26.24031007751938 23.58763030885852 88-89 23.654572661416516 26.582901623506576 26.09283044923482 23.669695265842087 90-91 23.624193972827975 26.676257997844832 26.10037859506847 23.599169434258723 92-93 23.66051817622445 26.673089820539918 26.215175758420166 23.451216244815463 94-95 23.407555178763108 26.81613601584209 26.28188777218348 23.49442103321132 96-97 23.47686213004042 26.863860657610438 26.31843115335798 23.340846058991158 98-99 24.78081613294452 28.816189471515326 26.35839040771754 20.044603987822622 100 23.562786178986094 29.837727964721022 20.22851522349669 26.370970632796194 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1950.0 1 1623.5 2 1851.5 3 2551.0 4 3375.0 5 5469.0 6 7338.0 7 8641.0 8 9417.0 9 9230.5 10 8561.0 11 7852.5 12 8626.5 13 11583.0 14 18480.0 15 28393.0 16 36996.0 17 42324.0 18 43499.5 19 40828.0 20 35588.0 21 29281.5 22 24330.5 23 22568.0 24 24187.0 25 29270.5 26 37171.0 27 46135.0 28 56327.5 29 69402.0 30 83081.5 31 96632.0 32 112061.5 33 127977.5 34 143758.0 35 159106.5 36 176783.0 37 193779.0 38 207154.0 39 220473.5 40 234677.0 41 246858.0 42 255302.5 43 264192.0 44 274451.5 45 289800.0 46 306246.0 47 322228.5 48 333976.0 49 337664.0 50 341614.0 51 343907.5 52 332238.5 53 313765.0 54 301635.0 55 289375.0 56 274570.5 57 253986.5 58 229758.5 59 203142.0 60 173056.0 61 148220.0 62 123152.5 63 99750.5 64 81812.5 65 64504.0 66 51423.0 67 38098.0 68 25291.0 69 18568.5 70 13351.5 71 8339.5 72 5684.0 73 4054.5 74 3072.0 75 2216.0 76 1384.0 77 772.0 78 531.5 79 413.0 80 297.0 81 186.5 82 141.0 83 106.0 84 66.0 85 42.5 86 32.5 87 24.5 88 17.5 89 13.5 90 7.0 91 2.0 92 1.5 93 2.0 94 2.0 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.2731183978466985E-5 7 0.0 8 0.0 9 0.0 10-11 0.0016614195091899416 12-13 2.8645163951550713E-4 14-15 0.00723767809175848 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 475.0 22-23 995.0 24-25 2635.0 26-27 2879.0 28-29 4232.0 30-31 9262.0 32-33 11400.0 34-35 15963.0 36-37 23098.0 38-39 28847.0 40-41 31609.0 42-43 40537.0 44-45 49739.0 46-47 48490.0 48-49 42890.0 50-51 37020.0 52-53 36354.0 54-55 39610.0 56-57 42593.0 58-59 44418.0 60-61 44764.0 62-63 43840.0 64-65 47293.0 66-67 51405.0 68-69 52645.0 70-71 52646.0 72-73 50157.0 74-75 52048.0 76-77 51535.0 78-79 56590.0 80-81 59875.0 82-83 58887.0 84-85 59660.0 86-87 63580.0 88-89 70360.0 90-91 75506.0 92-93 81061.0 94-95 98613.0 96-97 289161.0 98-99 514194.0 100-101 5467732.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.22224223776534 #Duplication Level Percentage of deduplicated Percentage of total 1 89.61995027866084 75.47993161705858 2 7.249501515560937 12.211385454932403 3 1.7391233391974157 4.394186014657082 4 0.6261656898703235 2.1094831365294335 5 0.2699884743913205 1.136951734579525 6 0.1547155544146578 0.7818294541116886 7 0.08818094693794694 0.519875795163431 8 0.05214125016047152 0.35131624012761226 9 0.039450275333246215 0.2990331580916881 >10 0.1531947186101766 2.1000841314760565 >50 0.005643090132198901 0.3170580623068936 >100 0.0018898296557550976 0.2559650757210959 >500 2.7518538595648895E-5 0.015829706751406804 >1k 2.7518536132478385E-5 0.027070418492962454 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.092473591386794E-5 0.0 0.0 1.2731183978466985E-5 3 0.0 6.365591989233493E-5 0.0 0.0 1.2731183978466985E-5 4 0.0 1.0184947182773588E-4 0.0 0.0 1.2731183978466985E-5 5 0.0 1.0184947182773588E-4 0.0 0.0 1.2731183978466985E-5 6 1.2731183978466985E-5 1.0184947182773588E-4 0.0 0.0 1.2731183978466985E-5 7 1.2731183978466985E-5 1.0184947182773588E-4 0.0 0.0 1.2731183978466985E-5 8 1.2731183978466985E-5 1.1458065580620286E-4 0.0 0.0 2.546236795693397E-5 9 1.2731183978466985E-5 2.546236795693397E-4 0.0 0.0 2.546236795693397E-5 10-11 1.2731183978466985E-5 2.546236795693397E-4 0.0 0.0 2.546236795693397E-5 12-13 1.2731183978466985E-5 2.546236795693397E-4 0.0 6.365591989233492E-6 2.546236795693397E-5 14-15 2.546236795693397E-5 4.837849911817454E-4 0.0 1.2731183978466985E-5 3.182795994616746E-5 16-17 5.092473591386794E-5 4.965161751602124E-4 0.0 1.2731183978466985E-5 3.819355193540095E-5 18-19 5.092473591386794E-5 5.347097270956133E-4 0.0 1.2731183978466985E-5 6.365591989233493E-5 20-21 5.092473591386794E-5 5.920000549987148E-4 0.0 1.2731183978466985E-5 7.63871038708019E-5 22-23 5.092473591386794E-5 6.365591989233492E-4 0.0 1.2731183978466985E-5 8.27526958600354E-5 24-25 5.092473591386794E-5 6.620215668802832E-4 0.0 1.9096775967700476E-5 8.91182878492689E-5 26-27 5.092473591386794E-5 6.747527508587502E-4 0.0 3.182795994616746E-5 9.54838798385024E-5 28-29 5.092473591386794E-5 6.747527508587502E-4 0.0 9.548387983850238E-5 1.0184947182773588E-4 30-31 5.092473591386794E-5 8.14795774621887E-4 0.0 3.246451914509081E-4 1.0184947182773588E-4 32-33 5.092473591386794E-5 8.211613666111205E-4 0.0 9.357420224173232E-4 1.0184947182773588E-4 34-35 5.092473591386794E-5 0.0010248603102665922 0.0 0.0017123442451038094 1.0184947182773588E-4 36-37 5.092473591386794E-5 0.001228559253922064 0.0 0.0029790970509612743 1.0184947182773588E-4 38-39 5.092473591386794E-5 0.001279483989835932 0.0 0.0049778929355805916 1.1458065580620286E-4 40-41 5.092473591386794E-5 0.0013622366856959674 0.0 0.007460473811381652 1.1458065580620286E-4 42-43 5.092473591386794E-5 0.0014195270135990688 0.0 0.009904861135247314 1.1458065580620286E-4 44-45 5.092473591386794E-5 0.001591397997308373 0.0 0.012565678586746915 1.2094624779543635E-4 46-47 5.092473591386794E-5 0.001718709837093043 0.0 0.015684818661471325 1.2731183978466985E-4 48-49 5.092473591386794E-5 0.0017250754290822766 0.0 0.018765765184260336 1.2731183978466985E-4 50-51 5.092473591386794E-5 0.001973333516662383 0.0 0.021757593419200076 1.4004302376313684E-4 52-53 5.092473591386794E-5 0.0019924302926300833 0.0 0.02481307757403215 1.591397997308373E-4 54-55 5.092473591386794E-5 0.0019987958846193164 0.0 0.027607572457305656 1.655053917200708E-4 56-57 5.092473591386794E-5 0.0020115270685977836 0.0 0.030943142659664004 1.718709837093043E-4 58-59 5.092473591386794E-5 0.0020433550285439512 0.0 0.034756132261214864 1.782365756985378E-4 60-61 5.092473591386794E-5 0.002094279764457819 0.0 0.038594584230722664 1.9096775967700476E-4 62-63 6.365591989233493E-5 0.0021515700923609203 0.0 0.042433036200230465 1.9096775967700476E-4 64-65 6.365591989233493E-5 0.0023807314039733262 0.0 0.04613781073796436 1.9096775967700476E-4 66-67 7.63871038708019E-5 0.0023998281799410266 0.0 0.04991260678757981 1.9096775967700476E-4 68-69 7.63871038708019E-5 0.002469849691822595 0.0 0.05377015553305531 1.9733335166623826E-4 70-71 7.63871038708019E-5 0.0025398712037041633 0.0 0.05760860750256311 2.0369894365547176E-4 72-73 7.63871038708019E-5 0.002597161531607265 0.0 0.06082323145712602 2.418924955908727E-4 74-75 7.63871038708019E-5 0.002648086267521133 0.0 0.06315940371717471 2.609892715585732E-4 76-77 7.63871038708019E-5 0.0027626669233273356 0.0 0.06568017814491117 2.737204555370402E-4 78-79 7.63871038708019E-5 0.0028135916592412036 0.0 0.06711243634248872 2.800860475262737E-4 80-81 7.63871038708019E-5 0.0028135916592412036 0.0 0.06763441488560586 2.8645163951550713E-4 82-83 7.63871038708019E-5 0.0028135916592412036 0.0 0.0680036192209814 2.9281723150474063E-4 84-85 7.63871038708019E-5 0.002819957251230437 0.0 0.068156393428723 2.9281723150474063E-4 86-87 7.63871038708019E-5 0.0028963443551012387 0.0 0.0682327805325938 2.9281723150474063E-4 88 8.91182878492689E-5 0.0030427529708536094 0.0 0.0682518773085615 2.9281723150474063E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10630 0.0 53.984623 1 GTATCAA 19395 0.0 38.924274 1 TCAACGC 23820 0.0 31.160872 4 ATCAACG 24295 0.0 30.533632 3 CAACGCA 24600 0.0 30.192162 5 TATCAAC 24725 0.0 30.108753 2 AACGCAG 25155 0.0 29.543417 6 ACGCAGA 28965 0.0 25.581987 7 GTGGTAT 5085 0.0 24.514523 1 TGGTATC 4875 0.0 24.045273 2 CGCAGAG 31625 0.0 23.471764 8 GTACATG 28940 0.0 22.806583 1 TACATGG 29260 0.0 22.317987 2 GCAGAGT 34920 0.0 21.15962 9 ACATGGG 29995 0.0 21.041998 3 GAGTACT 17865 0.0 20.49523 12-13 TATATAC 7825 0.0 19.39611 3 CAGAGTA 33695 0.0 19.384151 10-11 CATGGGG 22895 0.0 18.492867 4 GTACTTT 19755 0.0 18.457434 14-15 >>END_MODULE