##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139203_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11497457 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.588922750483 33.0 33.0 33.0 33.0 33.0 2 32.58719193296396 33.0 33.0 33.0 33.0 33.0 3 32.5700381397382 33.0 33.0 33.0 33.0 33.0 4 36.47939644392669 37.0 37.0 37.0 37.0 37.0 5 36.5116914983896 37.0 37.0 37.0 37.0 37.0 6 36.51391990420142 37.0 37.0 37.0 37.0 37.0 7 36.49018082868238 37.0 37.0 37.0 37.0 37.0 8 36.47560795400235 37.0 37.0 37.0 37.0 37.0 9 36.50504759443762 37.0 37.0 37.0 37.0 37.0 10-11 36.462616559470504 37.0 37.0 37.0 37.0 37.0 12-13 36.39131522735853 37.0 37.0 37.0 37.0 37.0 14-15 38.403768111505 40.0 37.0 40.0 37.0 40.0 16-17 38.36527781752086 40.0 37.0 40.0 37.0 40.0 18-19 38.39875369831781 40.0 37.0 40.0 37.0 40.0 20-21 38.40272694330844 40.0 37.0 40.0 37.0 40.0 22-23 38.3990275878394 40.0 37.0 40.0 37.0 40.0 24-25 38.39814679657498 40.0 37.0 40.0 37.0 40.0 26-27 38.24817984424301 40.0 37.0 40.0 37.0 40.0 28-29 38.16764476745499 40.0 37.0 40.0 37.0 40.0 30-31 38.110994586220436 40.0 37.0 40.0 35.0 40.0 32-33 38.023258011537024 40.0 37.0 40.0 33.0 40.0 34-35 37.98245605703448 40.0 37.0 40.0 33.0 40.0 36-37 37.9401642548246 40.0 37.0 40.0 33.0 40.0 38-39 37.88871483306402 40.0 37.0 40.0 33.0 40.0 40-41 37.8520031466443 40.0 37.0 40.0 33.0 40.0 42-43 37.75146278837765 40.0 37.0 40.0 33.0 40.0 44-45 37.69434694824706 40.0 37.0 40.0 33.0 40.0 46-47 37.64851625905186 40.0 37.0 40.0 33.0 40.0 48-49 37.61394830849418 40.0 37.0 40.0 33.0 40.0 50-51 37.55160122611014 40.0 37.0 40.0 33.0 40.0 52-53 37.45128039040662 40.0 37.0 40.0 33.0 40.0 54-55 37.24100779008366 40.0 37.0 40.0 33.0 40.0 56-57 37.05705146888331 37.0 37.0 40.0 33.0 40.0 58-59 36.98947068399055 37.0 37.0 40.0 33.0 40.0 60-61 36.85085432374794 37.0 37.0 40.0 33.0 40.0 62-63 36.660422368341344 37.0 37.0 40.0 33.0 40.0 64-65 36.50611237009299 37.0 37.0 40.0 33.0 40.0 66-67 36.28375280489767 37.0 37.0 40.0 33.0 40.0 68-69 36.06145890869292 37.0 37.0 40.0 33.0 40.0 70-71 35.8008537593625 37.0 35.0 37.0 33.0 40.0 72-73 35.599476315218006 37.0 33.0 37.0 33.0 40.0 74-75 35.43031738883874 37.0 33.0 37.0 33.0 40.0 76-77 33.63264503643644 35.0 33.0 37.0 27.0 37.0 78-79 34.901355018988916 37.0 33.0 37.0 33.0 37.0 80-81 34.98911233044633 37.0 33.0 37.0 33.0 37.0 82-83 34.8876799035234 37.0 33.0 37.0 33.0 37.0 84-85 34.741982988366374 37.0 33.0 37.0 33.0 37.0 86-87 34.62731689195855 37.0 33.0 37.0 33.0 37.0 88-89 34.559701924798006 37.0 33.0 37.0 33.0 37.0 90-91 34.48147163986005 37.0 33.0 37.0 33.0 37.0 92-93 34.410883151588095 37.0 33.0 37.0 33.0 37.0 94-95 34.4028564698297 37.0 33.0 37.0 33.0 37.0 96-97 34.41053434966553 37.0 33.0 37.0 33.0 37.0 98-99 34.41575986103731 37.0 33.0 37.0 33.0 37.0 100 34.426904247596745 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 4.0 18 6.0 19 18.0 20 119.0 21 523.0 22 1804.0 23 5064.0 24 11842.0 25 23106.0 26 40341.0 27 64612.0 28 96101.0 29 134722.0 30 183184.0 31 245849.0 32 326148.0 33 436792.0 34 597014.0 35 858107.0 36 1474947.0 37 3385639.0 38 3528242.0 39 83272.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.71273204152883 19.594167649420218 14.462311100619901 23.230789208431048 2 15.02657500697763 20.70413483607723 41.703291432183654 22.565998724761485 3 18.647645301043525 26.166186140117766 30.09815126945028 25.088017289388425 4 12.676681460952627 17.83981449115226 38.17661592472144 31.30688812317367 5 13.552631681944973 37.624780853714 34.80018233597221 14.02240512836882 6 30.14496686440608 37.33547989533336 18.424607880613582 14.094945359646982 7 26.953490671893793 32.83974012688197 22.318256985001117 17.88851221622312 8 25.05346182203595 36.37374769046755 20.38478595745129 18.18800453004521 9 26.31721084062328 16.62197997348457 20.558607003270378 36.50220218262177 10-11 24.907282401973756 26.71160947834783 27.811204530324478 20.569903589353935 12-13 25.962791333610326 24.35406211249489 28.14592288415088 21.537223669743906 14-15 22.910307012603432 25.322540198522542 26.420114104751924 25.347038684122104 16-17 21.873554299876922 28.60262491088247 26.974560548476067 22.549260240764546 18-19 21.870723239060602 27.282806972011286 29.38145800414822 21.465011784779886 20-21 23.06318652525037 26.241095704062907 29.392667850093574 21.30304992059315 22-23 22.750842857784686 26.28578951582644 29.21649944483619 21.746868181552678 24-25 22.286925150660522 26.51942327678425 29.363965283152165 21.82968628940306 26-27 22.120435925987596 26.681426508928542 29.324236730438457 21.873900834645404 28-29 22.067101769716906 26.703332820392106 29.36263264081042 21.866932769080567 30-31 22.39417481779416 26.58385761847384 29.190854174525764 21.83111338920623 32-33 22.186531903999327 26.75594830187521 29.10301546779202 21.954504326333442 34-35 22.31166877558733 26.770561276295794 29.064504791062824 21.853265157054054 36-37 22.381314245275618 26.734133804140324 28.92756276652284 21.95698918406121 38-39 22.173136938902395 26.94073998765003 28.963666877437355 21.922456196010216 40-41 22.4085478013691 26.7931375192785 28.788997351405964 22.009317327946434 42-43 22.34719680729545 26.916727542063345 28.492526844421935 22.243548806219273 44-45 22.422790779460883 27.06332206182674 28.227982448289957 22.285904710422418 46-47 22.590232772463768 27.103179136734685 27.721463681941383 22.585124408860164 48-49 22.538767035565854 27.345884485484117 27.568948509261855 22.54639996968818 50-51 22.621130948987414 27.49587636523344 27.321878389670246 22.561114296108897 52-53 22.804133381774474 27.38723437156378 27.219180350057716 22.58945189660403 54-55 22.785042635742833 27.285215352224952 27.231265709495787 22.698476302536427 56-57 22.73863410105609 27.51295690751559 27.114639199778868 22.633769791649453 58-59 22.679665582032737 27.485428951071782 27.203423181120872 22.631482285774602 60-61 22.78422895139201 27.509458446324015 27.13123524409284 22.57507735819114 62-63 22.715907459627775 27.58742774298734 27.119319674470667 22.57734512291422 64-65 22.755206795951636 27.481359207778873 27.044279646956525 22.719154349312966 66-67 22.80697270804789 27.512846495236076 26.923768739190752 22.756412057525285 68-69 22.76794916877857 27.485706134268533 27.033203015826494 22.7131416811264 70-71 22.77020903156387 27.297396604761033 27.081589803628546 22.85080456004655 72-73 22.819059043785305 27.362983634780296 26.931279127255202 22.88667819417919 74-75 22.649750810919667 27.491332526207252 26.948246622474077 22.91067004039901 76-77 22.837320664135444 27.370053036323384 26.909127774452955 22.883498525088218 78-79 22.791216059135806 27.34751567015258 26.88353255843427 22.97773571227734 80-81 22.776217382164425 27.401842812801824 26.894030707710197 22.927909097323557 82-83 22.864287232444777 27.289863840240674 27.012252882749337 22.833596044565205 84-85 22.925546501950144 27.244667522898013 26.94353395815023 22.88625201700161 86-87 22.769971989084766 27.280841560148065 27.061834517566545 22.88735193320062 88-89 22.86201668012751 27.214036535577428 26.98057198895536 22.943374795339697 90-91 22.92716069126073 27.18194612077588 26.985632111381857 22.90526107658153 92-93 22.96955725318074 27.096253247654932 27.071229394001584 22.862960105162745 94-95 22.804515376479998 27.117862628969814 27.10081425137779 22.9768077431724 96-97 22.905587783630978 27.24908846537279 27.138126075490526 22.707197675505704 98-99 24.047787923904885 29.141783269016873 27.318794549713655 19.49163425736459 100 22.930901071970986 30.147137063685214 21.15487081198241 25.76709105236139 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2930.0 1 2606.5 2 3777.0 3 5627.5 4 7856.5 5 13396.0 6 18034.5 7 21049.5 8 22996.5 9 22704.0 10 20962.5 11 19123.5 12 20968.5 13 28459.5 14 46632.5 15 72261.0 16 93972.5 17 107320.5 18 109543.5 19 100507.5 20 85181.0 21 68152.0 22 54160.0 23 47843.0 24 49550.5 25 57961.5 26 71680.0 27 87985.0 28 105819.5 29 127254.0 30 150508.0 31 174144.5 32 200850.5 33 227967.0 34 255157.5 35 280698.0 36 307815.0 37 335392.5 38 355846.0 39 372093.5 40 388699.0 41 401609.0 42 410537.5 43 423041.5 44 435029.0 45 446368.5 46 456290.0 47 464616.5 48 471486.0 49 471656.5 50 468019.0 51 461486.5 52 445436.5 53 422337.5 54 400886.5 55 378278.0 56 352291.0 57 323017.0 58 290804.0 59 254229.0 60 214259.0 61 177498.5 62 142504.0 63 110723.5 64 84769.5 65 63431.5 66 48077.5 67 36718.5 68 27098.0 69 19160.0 70 13363.5 71 9704.0 72 6933.5 73 4832.0 74 3408.5 75 2396.5 76 1545.0 77 930.5 78 643.0 79 474.5 80 326.5 81 224.5 82 162.5 83 111.5 84 76.0 85 52.5 86 39.5 87 33.0 88 26.5 89 17.0 90 9.5 91 4.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.739515094511769E-5 7 0.0 8 0.0 9 0.0 10-11 0.0015568660095880331 12-13 2.4353211323164766E-4 14-15 0.007201592491278724 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 206.0 20-21 753.0 22-23 1550.0 24-25 4739.0 26-27 5527.0 28-29 8956.0 30-31 18891.0 32-33 23421.0 34-35 33061.0 36-37 45133.0 38-39 58635.0 40-41 66531.0 42-43 86303.0 44-45 106736.0 46-47 101216.0 48-49 86121.0 50-51 72178.0 52-53 67893.0 54-55 70755.0 56-57 75808.0 58-59 77017.0 60-61 77344.0 62-63 75331.0 64-65 79252.0 66-67 88107.0 68-69 90686.0 70-71 91745.0 72-73 87350.0 74-75 89766.0 76-77 88905.0 78-79 97604.0 80-81 100548.0 82-83 98016.0 84-85 99096.0 86-87 104809.0 88-89 114061.0 90-91 120636.0 92-93 127695.0 94-95 149181.0 96-97 395563.0 98-99 707421.0 100-101 7602911.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.09111044202332 #Duplication Level Percentage of deduplicated Percentage of total 1 89.04198875701249 74.87639710543337 2 7.678896041420205 12.914537901837644 3 1.8325948669799557 4.623148120640895 4 0.664302250969008 2.234476558124782 5 0.3068477562791804 1.2901584281079803 6 0.1547278864253281 0.7806743871511863 7 0.09112803679535675 0.5364140464566176 8 0.056710450830403485 0.38150758271971136 9 0.04048584913610848 0.3064050009939233 >10 0.12833707731980862 1.6692893758736256 >50 0.0029174017106903052 0.1666289888524618 >100 9.404661389658405E-4 0.1196832323100662 >500 8.79720749048101E-5 0.05249348519535313 >1k 3.5186907571696254E-5 0.04818578630237035 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.697575472558846E-6 0.0 0.0 0.0 3 0.0 8.697575472558846E-6 0.0 8.697575472558846E-6 0.0 4 0.0 6.0883028307911916E-5 0.0 8.697575472558846E-6 0.0 5 0.0 6.0883028307911916E-5 0.0 8.697575472558846E-6 0.0 6 0.0 6.0883028307911916E-5 0.0 8.697575472558846E-6 0.0 7 0.0 6.0883028307911916E-5 0.0 8.697575472558846E-6 0.0 8 0.0 7.82781792530296E-5 0.0 8.697575472558846E-6 0.0 9 0.0 2.2613696228652996E-4 0.0 4.3487877362794224E-5 0.0 10-11 0.0 2.2613696228652996E-4 0.0 8.697575472558845E-5 0.0 12-13 0.0 2.2613696228652996E-4 0.0 1.4350999529722094E-4 0.0 14-15 0.0 3.1311271701211845E-4 0.0 1.4785878303350035E-4 0.0 16-17 1.3046363208838268E-5 3.218102924846773E-4 0.0 1.565563585060592E-4 0.0 18-19 1.739515094511769E-5 3.261590802209567E-4 0.0 2.0004423586885344E-4 0.0 20-21 1.739515094511769E-5 3.3485665569351556E-4 0.0 2.522296887042065E-4 0.0 22-23 2.1743938681397112E-5 3.39205443429795E-4 0.0 2.7832241512188306E-4 0.0 24-25 2.6092726417676533E-5 3.783445330563098E-4 0.0 3.522518066386332E-4 0.0 26-27 2.6092726417676533E-5 3.91390896265148E-4 0.0 6.697133113870311E-4 0.0 28-29 2.6092726417676533E-5 3.91390896265148E-4 0.0 0.0013394266227740623 4.348787736279423E-6 30-31 2.6092726417676533E-5 4.479251368367805E-4 0.0 0.003061546566340713 8.697575472558846E-6 32-33 2.6092726417676533E-5 4.5227392457305993E-4 0.0 0.0066797379629251925 8.697575472558846E-6 34-35 2.6092726417676533E-5 5.262033160898102E-4 0.0 0.011359033567161851 8.697575472558846E-6 36-37 2.6092726417676533E-5 6.044814953428397E-4 0.0 0.01769086851118469 8.697575472558846E-6 38-39 2.6092726417676533E-5 6.392717972330751E-4 0.0 0.02718427213948267 8.697575472558846E-6 40-41 2.6092726417676533E-5 7.566890661126196E-4 0.0 0.03635151668755969 8.697575472558846E-6 42-43 2.6092726417676533E-5 7.958281557391343E-4 0.0 0.04477511853273293 8.697575472558846E-6 44-45 2.6092726417676533E-5 8.915014859372816E-4 0.0 0.05302911765619128 8.697575472558846E-6 46-47 2.6092726417676533E-5 9.480357265089141E-4 0.0 0.060478591048437925 8.697575472558846E-6 48-49 2.6092726417676533E-5 9.56733301981473E-4 0.0 0.06688000659624124 8.697575472558846E-6 50-51 3.479030189023538E-5 0.0010698017831247378 0.0 0.07240731580905238 8.697575472558846E-6 52-53 3.913908962651481E-5 0.0010871969340698557 0.0 0.07765195381900536 1.3046363208838268E-5 54-55 4.3487877362794224E-5 0.0010958945095424144 0.0 0.08249215456948436 1.739515094511769E-5 56-57 4.783666509907364E-5 0.001121987235960091 0.0 0.08679745442840099 1.739515094511769E-5 58-59 5.218545283535307E-5 0.0011437311746414882 0.0 0.09136368155149438 1.739515094511769E-5 60-61 5.218545283535307E-5 0.0011915678397405617 0.0 0.09615169684913803 1.739515094511769E-5 62-63 5.218545283535307E-5 0.0012263581416307972 0.0 0.10060485549108816 2.6092726417676533E-5 64-65 5.218545283535307E-5 0.0013916120756094152 0.0 0.10481883080754292 2.6092726417676533E-5 66-67 5.653424057163249E-5 0.0014090072265545328 0.0 0.10931547732685584 2.6092726417676533E-5 68-69 6.0883028307911916E-5 0.001461192679389886 0.0 0.11412958535091716 2.6092726417676533E-5 70-71 6.0883028307911916E-5 0.0015003317690164006 0.0 0.11816526037018446 2.6092726417676533E-5 72-73 6.0883028307911916E-5 0.0015090293444889598 0.0 0.12118766784689866 2.6092726417676533E-5 74-75 6.0883028307911916E-5 0.0015307732831703568 0.0 0.12378389412545748 2.6092726417676533E-5 76-77 7.392939151675018E-5 0.0015873075237419893 0.0 0.1266106061540391 2.6092726417676533E-5 78-79 7.82781792530296E-5 0.0016177490378959452 0.0 0.12843709700327646 2.6092726417676533E-5 80-81 7.82781792530296E-5 0.0016220978256322246 0.0 0.12901983455993793 2.6092726417676533E-5 82-83 7.82781792530296E-5 0.001626446613368504 0.0 0.12949820121092864 4.3487877362794224E-5 84-85 7.82781792530296E-5 0.001626446613368504 0.0 0.1297460821118966 4.3487877362794224E-5 86-87 8.697575472558845E-5 0.0016742832784675777 4.348787736279423E-6 0.12984175544209473 4.3487877362794224E-5 88 8.697575472558845E-5 0.001739515094511769 8.697575472558846E-6 0.129846104229831 4.3487877362794224E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 22305 0.0 57.11458 1 GTATCAA 41415 0.0 39.214546 1 GTGGTAT 8435 0.0 31.844046 1 TATCAAC 53135 0.0 30.266197 2 TCAACGC 53050 0.0 30.185284 4 ATCAACG 53025 0.0 30.183332 3 TGGTATC 8510 0.0 29.49615 2 CAACGCA 54365 0.0 29.44026 5 AACGCAG 55815 0.0 28.637003 6 ACGCAGA 63170 0.0 25.275682 7 CGCAGAG 64820 0.0 24.639229 8 GTACATG 52135 0.0 22.328493 1 GCAGAGT 72080 0.0 22.100979 9 TACATGG 52510 0.0 21.72778 2 GAGTACT 41605 0.0 21.423779 12-13 ACATGGG 53795 0.0 20.746147 3 CAGAGTA 70450 0.0 20.28226 10-11 GTACTTT 45635 0.0 19.494709 14-15 CATGGGG 36530 0.0 19.486584 4 AGAGTAC 66950 0.0 19.256071 10-11 >>END_MODULE