##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139202_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6827097 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00317045444059 31.0 31.0 34.0 30.0 34.0 2 32.183962964053386 33.0 31.0 34.0 30.0 34.0 3 32.19703059733881 34.0 31.0 34.0 30.0 34.0 4 35.95809170427782 37.0 35.0 37.0 35.0 37.0 5 35.819680312144385 37.0 35.0 37.0 35.0 37.0 6 35.84033784784367 37.0 35.0 37.0 35.0 37.0 7 35.782967782646125 37.0 35.0 37.0 33.0 37.0 8 35.772684202377675 37.0 35.0 37.0 33.0 37.0 9 37.54695839241774 39.0 37.0 39.0 35.0 39.0 10-11 37.42054221582028 39.0 37.0 39.0 34.0 39.0 12-13 37.394445032786265 39.0 37.0 39.0 34.0 39.0 14-15 38.626818763524234 40.0 38.0 41.0 34.0 41.0 16-17 38.58655758076969 40.0 38.0 41.0 34.0 41.0 18-19 38.604685271060305 40.0 38.0 41.0 34.0 41.0 20-21 38.58449637914734 40.0 38.0 41.0 34.0 41.0 22-23 38.49789858379733 40.0 38.0 41.0 34.0 41.0 24-25 38.43604455952327 40.0 38.0 41.0 34.0 41.0 26-27 38.26150605380727 40.0 38.0 41.0 33.5 41.0 28-29 38.15142151862369 40.0 38.0 41.0 33.0 41.0 30-31 37.996862207064325 40.0 37.0 41.0 33.0 41.0 32-33 37.81756641606299 40.0 37.0 41.0 33.0 41.0 34-35 37.908011532961304 40.0 37.0 41.0 33.0 41.0 36-37 37.87819949940017 40.0 37.0 41.0 33.0 41.0 38-39 37.83419006352854 40.0 37.0 41.0 33.0 41.0 40-41 37.7516334331785 40.0 37.0 41.0 33.0 41.0 42-43 37.643256373835364 40.0 37.0 41.0 32.0 41.0 44-45 37.692044025978724 40.0 37.0 41.0 32.0 41.0 46-47 37.68237275752934 40.0 37.0 41.0 32.0 41.0 48-49 37.61625675991212 40.0 37.0 41.0 32.0 41.0 50-51 37.51192143713102 40.0 36.0 41.0 32.0 41.0 52-53 37.30809728236191 39.0 36.0 41.0 31.0 41.0 54-55 37.16952141795453 39.0 35.5 41.0 31.0 41.0 56-57 36.98918766251924 39.0 35.0 41.0 31.0 41.0 58-59 36.836910316372915 39.0 35.0 40.0 31.0 41.0 60-61 36.60793611171733 38.0 35.0 40.0 31.0 41.0 62-63 36.383319555606704 38.0 35.0 40.0 30.0 41.0 64-65 36.07147970923325 37.5 34.5 40.0 30.0 41.0 66-67 35.78321315514985 37.0 34.0 40.0 29.5 41.0 68-69 35.47748375766561 36.5 34.0 39.0 29.0 41.0 70-71 35.19018911126852 36.0 34.0 39.0 29.0 41.0 72-73 34.91517187803148 35.5 34.0 39.0 29.0 40.0 74-75 34.56041905558176 35.0 33.5 38.0 29.0 40.0 76-77 33.299481508059024 34.5 31.5 36.0 27.0 39.0 78-79 33.99663457617338 35.0 33.0 37.0 29.0 39.0 80-81 33.93141840024704 35.0 33.0 36.0 29.0 39.0 82-83 33.6658703395277 35.0 33.0 36.0 29.0 37.5 84-85 33.50571382989943 35.0 33.0 35.5 29.0 37.0 86-87 33.29162824400517 35.0 33.0 35.0 29.0 37.0 88-89 33.206089710005415 35.0 33.0 35.0 29.0 36.0 90-91 33.08353535391427 35.0 33.0 35.0 29.0 36.0 92-93 32.963856371691264 35.0 33.0 35.0 29.0 36.0 94-95 32.93928512351441 35.0 33.0 35.0 29.0 35.5 96-97 33.01633949160511 34.0 33.0 35.0 29.0 35.0 98-99 33.1665351353665 34.0 33.0 35.0 29.0 35.0 100 31.958592979413535 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 2.0 19 5.0 20 44.0 21 224.0 22 1130.0 23 4213.0 24 11321.0 25 24159.0 26 44087.0 27 70633.0 28 99771.0 29 132018.0 30 166049.0 31 203436.0 32 249022.0 33 311178.0 34 406162.0 35 557941.0 36 854232.0 37 1374668.0 38 1572278.0 39 719058.0 40 25464.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.61836282683547 20.114098276324476 14.346947172421896 23.920591724418152 2 15.032348302653384 21.329768714286615 40.65016214065803 22.987720842401977 3 18.210082557784077 26.16333120797903 30.477155956624024 25.149430277612872 4 12.812576121300165 18.32617875504039 38.4293646333134 30.431880490346042 5 13.489774643600347 37.624498377568095 35.42870417689979 13.457022801931773 6 30.107804239488615 37.8041794338062 18.71417675770536 13.373839568999827 7 26.74095592899881 32.44220786668184 23.10339226174756 17.713443942571786 8 24.82327407974429 36.241509385321464 20.873513295621844 18.061703239312404 9 25.78536675251575 16.637203191927696 21.026887416423115 36.55054263913344 10-11 24.460140232371096 26.573183301775266 28.653005809057642 20.313670656796 12-13 25.344209309492644 24.185202610304586 28.54817040803293 21.922417672169836 14-15 22.369603068478447 25.408134672760617 26.3472673670815 25.874994891679435 16-17 22.042379052614177 28.629227195990175 26.851887318179497 22.47650643321615 18-19 22.097961170388576 27.762559157741844 28.4546513645381 21.68482830733148 20-21 23.056035463612425 26.869109133179485 28.36194727903301 21.712908124175083 22-23 22.79705411483977 26.776498375019486 28.164873699224486 22.26157381091626 24-25 22.52370034737114 26.954979193923705 28.322213656915356 22.199106801789796 26-27 22.431069483356254 27.04227804805329 28.24960558049185 22.27704688809861 28-29 22.461447734697614 27.08372305477273 28.258427497732804 22.196401712796852 30-31 22.774711983808103 26.825724968304087 28.1873975434658 22.21216550442201 32-33 22.553444989657752 26.992774922221635 28.05125668913066 22.402523398989953 34-35 22.684333272209596 27.073686820405783 28.049339771372615 22.192640136012002 36-37 22.766922542710585 26.95850226649366 27.923286379508816 22.351288811286935 38-39 22.443293823150334 27.258360836493402 28.01183815476767 22.28650718558859 40-41 22.682934747021537 27.031194040581784 27.952215075493974 22.3336561369027 42-43 22.500843740217537 27.174753148900386 27.738268198953755 22.586134911928315 44-45 22.556453144183443 27.21596644247169 27.610570109796207 22.617010303548664 46-47 22.698790203218934 27.179767495975486 27.429660600929978 22.691781699875598 48-49 22.74032201401066 27.37507629239511 27.269736561487214 22.61486513210702 50-51 22.682323363548296 27.416929712084738 27.25755383169275 22.643193092674217 52-53 22.886967615302943 27.307516425250338 27.145020928071162 22.66049503137556 54-55 22.93183437340465 27.230010057832537 27.138352979124917 22.699802589637894 56-57 22.886819518630574 27.393476826883102 27.03192646667697 22.687777187809353 58-59 22.684885056212067 27.305440706997413 27.16185763389917 22.84781660289135 60-61 22.90806604595217 27.26548310497008 27.22194876918957 22.604502079888185 62-63 22.73307509391814 27.309170063519954 27.284348373766036 22.67340646879587 64-65 22.782744916466648 27.223637158637416 27.20915571008305 22.784462214812887 66-67 22.80297904311151 27.376614041483695 27.159280320742063 22.661126594662733 68-69 22.751291569084582 27.46871486823903 27.101368145957345 22.678625416719044 70-71 22.75073766391113 27.298525012507103 26.92267376366848 23.028063559913285 72-73 22.74825963857431 27.3175014864817 26.86195373731934 23.072285137624647 74-75 22.652037894222588 27.390057917791378 27.07703220876882 22.88087197921721 76-77 22.790350993928595 27.169734204465612 27.028869277839675 23.011045523766114 78-79 22.64598469872973 27.211769317849278 26.852112624816836 23.290133358604155 80-81 22.8971459246346 27.35056813999458 26.89137924534061 22.860906690030216 82-83 23.00330033602959 27.073330181503945 27.056786711150828 22.866582771315638 84-85 22.79159524259362 27.091961108529194 26.980679759509457 23.13576388936773 86-87 22.63946888381596 27.421579756116433 26.9922513432982 22.946700016769405 88-89 23.05566473084172 27.22634423834731 26.875665771245743 22.84232525956523 90-91 23.02562953624991 27.232806512289187 26.964894667121403 22.7766692843395 92-93 22.815395817431856 27.03048593609998 27.080371835890908 23.073746410577257 94-95 22.798571299518443 27.36878139450386 27.15837665347001 22.67427065250768 96-97 23.021536481471415 27.259965911567658 27.24448699100124 22.47401061595969 98-99 23.82280384877885 29.374122536683455 27.524190871458277 19.278882743079418 100 22.753961265066845 30.466387168596746 21.226103107293035 25.553548459043373 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1612.0 1 1314.5 2 1566.0 3 2213.0 4 2816.5 5 4416.5 6 5971.0 7 7369.0 8 8596.5 9 8940.0 10 8232.5 11 7220.5 12 7576.0 13 9939.5 14 15421.0 15 23379.5 16 30317.0 17 34655.5 18 36221.0 19 34963.5 20 32013.5 21 28990.0 22 27343.0 23 28339.0 24 32955.5 25 41059.0 26 52261.0 27 64389.0 28 76596.0 29 90739.5 30 104572.0 31 117477.5 32 131617.0 33 145966.5 34 159920.5 35 173922.0 36 189560.0 37 202776.0 38 212219.5 39 222912.5 40 234129.0 41 242783.5 42 248301.0 43 253590.5 44 259680.0 45 268704.0 46 277687.5 47 286260.5 48 290941.5 49 288663.5 50 286805.5 51 284112.5 52 271639.0 53 252973.5 54 238380.0 55 226245.0 56 212882.0 57 195679.5 58 176007.0 59 155213.5 60 133110.0 61 113556.0 62 94556.0 63 77102.0 64 63354.0 65 50505.5 66 40215.0 67 30188.0 68 20792.0 69 15551.5 70 11577.0 71 7733.0 72 5443.5 73 3937.5 74 2915.5 75 2068.0 76 1315.0 77 770.0 78 533.5 79 388.0 80 263.0 81 173.0 82 123.5 83 82.5 84 53.5 85 35.5 86 24.0 87 19.5 88 14.5 89 9.0 90 6.5 91 5.5 92 4.0 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 1.4647514163047632E-5 14-15 0.0 16-17 0.0010033547201687629 18-19 0.0017064353999950493 20-21 0.0 22-23 0.0033034709811316136 24-25 2.71073888514636E-4 26-27 0.0016563659272922785 28-29 0.0052061996011464485 30-31 0.0015710060987337692 32-33 0.005333803787088972 34-35 0.011340426621389564 36-37 5.334118041365197E-4 38-39 3.725031578955211E-5 40-41 0.002803866607020777 42-43 0.005902624954683012 44-45 0.001834801059982083 46-47 0.0018904158223193557 48-49 0.002722023050959761 50-51 0.01112073900517091 52-53 0.006531224254745164 54-55 0.010150459330109364 56-57 0.01855175808507457 58-59 0.012596669775563429 60-61 0.01631257323826237 62-63 0.015252414365548658 64-65 0.010872288583725498 66-67 0.01324247556121553 68-69 0.009058243241275148 70-71 0.00882226054560024 72-73 0.0064905774438936865 74-75 0.010396914591822085 76-77 0.012191532932104045 78-79 0.00727548001753923 80-81 0.004039384900420186 82-83 0.002171226560405567 84-85 9.193765597223335E-6 86-87 0.003947777238475819 88-89 8.02483052502029E-4 90-91 7.289021199542709E-4 92-93 0.0016494967717200903 94-95 0.0011155061833404132 96-97 4.2996816699963604E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 157.0 20-21 547.0 22-23 1116.0 24-25 2409.0 26-27 2854.0 28-29 5851.0 30-31 13798.0 32-33 18087.0 34-35 25051.0 36-37 35822.0 38-39 41322.0 40-41 43866.0 42-43 53752.0 44-45 60639.0 46-47 60191.0 48-49 55555.0 50-51 48315.0 52-53 45363.0 54-55 49001.0 56-57 52766.0 58-59 32978.0 60-61 54013.0 62-63 53233.0 64-65 55958.0 66-67 59793.0 68-69 61802.0 70-71 61958.0 72-73 59459.0 74-75 60492.0 76-77 59546.0 78-79 64655.0 80-81 66620.0 82-83 65081.0 84-85 67172.0 86-87 72484.0 88-89 80378.0 90-91 88190.0 92-93 99411.0 94-95 117791.0 96-97 293176.0 98-99 475653.0 100-101 4160792.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.00653980199718 #Duplication Level Percentage of deduplicated Percentage of total 1 91.48328820430677 79.59644356365597 2 6.0606465587958605 10.546317720874185 3 1.3606754579687983 3.55162990174089 4 0.45848876572952013 1.5956608417685623 5 0.2170904421926583 0.9444144099634347 6 0.1284708631926522 0.6706683163061057 7 0.07334222832193937 0.4466877455361989 8 0.053485474580830354 0.37228688583565794 9 0.033083415914718105 0.25906261892129534 >10 0.12833312469081037 1.7656889337424126 >50 0.0025614421562854327 0.14850503718616367 >100 4.800967013661216E-4 0.06803151379874547 >500 5.392544782394701E-5 0.034602510670434926 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4647514163047632E-5 2 0.0 1.4647514163047632E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 3 0.0 2.9295028326095264E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 4 0.0 4.3942542489142895E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 5 0.0 7.323757081523817E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 6 4.3942542489142895E-5 7.323757081523817E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 7 4.3942542489142895E-5 7.323757081523817E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 8 4.3942542489142895E-5 8.788508497828579E-5 0.0 1.4647514163047632E-5 1.4647514163047632E-5 9 4.3942542489142895E-5 2.0506519828266686E-4 0.0 1.4647514163047632E-5 1.4647514163047632E-5 10-11 4.3942542489142895E-5 2.0506519828266686E-4 0.0 1.4647514163047632E-5 1.4647514163047632E-5 12-13 4.3942542489142895E-5 2.0506519828266686E-4 0.0 1.4647514163047632E-5 1.4647514163047632E-5 14-15 8.056132789676198E-5 2.709790120163812E-4 0.0 1.4647514163047632E-5 1.4647514163047632E-5 16-17 1.3182762746742868E-4 2.78302769097905E-4 0.0 4.3942542489142895E-5 1.4647514163047632E-5 18-19 1.3182762746742868E-4 3.222453115870479E-4 0.0 5.859005665219053E-5 3.6618785407619076E-5 20-21 1.391513845489525E-4 3.661878540761908E-4 0.0 1.0985635622285724E-4 4.3942542489142895E-5 22-23 1.4647514163047633E-4 4.3942542489142897E-4 0.0 3.2956906866857174E-4 4.3942542489142895E-5 24-25 1.4647514163047633E-4 4.613966961360004E-4 0.0 0.001193772404288382 4.3942542489142895E-5 26-27 1.6112265579352396E-4 4.8336796738057187E-4 0.0 0.0036545547836803844 4.3942542489142895E-5 28-29 1.6112265579352396E-4 4.8336796738057187E-4 0.0 0.012289264382796962 4.3942542489142895E-5 30-31 1.6112265579352396E-4 5.859005665219053E-4 0.0 0.013534303086656011 4.3942542489142895E-5 32-33 1.6112265579352396E-4 6.151955948480005E-4 0.0 0.016515072218836205 4.3942542489142895E-5 34-35 1.6112265579352396E-4 6.81109408581715E-4 0.0 0.020294130872902494 4.3942542489142895E-5 36-37 1.6112265579352396E-4 7.689944935600007E-4 0.0 0.0275226791123665 7.323757081523817E-5 38-39 1.6112265579352396E-4 7.909657648045721E-4 0.0 0.04620558342733376 1.0985635622285724E-4 40-41 1.6112265579352396E-4 8.934983639459056E-4 0.0 0.06541579825217073 1.1718011330438105E-4 42-43 1.7577016995657158E-4 9.374409064350484E-4 0.0 0.07771238639204921 1.1718011330438105E-4 44-45 1.7577016995657158E-4 0.0010472972626579058 0.0 0.09316551383406446 1.2450387038590488E-4 46-47 1.7577016995657158E-4 0.00111321107639162 0.0 0.1099955076074062 1.7577016995657158E-4 48-49 1.7577016995657158E-4 0.0011205348334731439 0.0 0.126393399712938 1.7577016995657158E-4 50-51 1.7577016995657158E-4 0.0012450387038590487 0.0 0.141758642069975 1.7577016995657158E-4 52-53 1.7577016995657158E-4 0.0012523624609405725 0.0 0.18119707395398074 1.7577016995657158E-4 54-55 1.8309392703809538E-4 0.001318276274674287 0.0 0.22806911927573315 1.7577016995657158E-4 56-57 1.904176841196192E-4 0.0013475713030003823 0.0 0.27471412812795837 1.7577016995657158E-4 58-59 1.904176841196192E-4 0.00136221881716343 0.0 0.46579827414199626 1.7577016995657158E-4 60-61 1.9774144120114303E-4 0.0014134851167340965 0.0 0.6368885633234741 1.7577016995657158E-4 62-63 2.1971271244571448E-4 0.0014427801450601918 0.0 0.644871458542335 1.7577016995657158E-4 64-65 2.1971271244571448E-4 0.00166981661458743 0.0 0.6511918609036901 1.8309392703809538E-4 66-67 2.2703646952723828E-4 0.0017357304283211444 0.0 0.6572632555242733 1.904176841196192E-4 68-69 2.343602266087621E-4 0.0017723492137287635 0.0 0.6635616866143839 1.904176841196192E-4 70-71 2.4900774077180976E-4 0.001794320484973335 0.0 0.6689959143688745 2.0506519828266686E-4 72-73 2.9295028326095266E-4 0.0018016442420548588 0.0 0.6731851034195061 2.0506519828266686E-4 74-75 2.9295028326095266E-4 0.0018822055699516207 0.0 0.6765100891345179 2.0506519828266686E-4 76-77 2.9295028326095266E-4 0.001962766897848383 0.0 0.6795494483233503 2.0506519828266686E-4 78-79 2.9295028326095266E-4 0.0019700906549299066 0.0 0.6816879853911553 2.0506519828266686E-4 80-81 2.9295028326095266E-4 0.001999385683256002 0.0 0.6824350086134707 2.0506519828266686E-4 82-83 2.9295028326095266E-4 0.0020067094403375257 0.0 0.6828817577954436 2.0506519828266686E-4 84-85 2.9295028326095266E-4 0.0020286807115820972 0.0 0.683123441779134 2.0506519828266686E-4 86-87 2.9295028326095266E-4 0.0020726232540712397 0.0 0.6832113268641122 2.0506519828266686E-4 88 2.9295028326095266E-4 0.0021238895536419065 0.0 0.6832186506211938 2.0506519828266686E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8140 0.0 51.394554 1 GTATCAA 14360 0.0 36.017525 1 TCAACGC 17380 0.0 29.099869 4 ATCAACG 17640 0.0 28.67096 3 CAACGCA 18010 0.0 27.987707 5 TATCAAC 18400 0.0 27.602022 2 AACGCAG 18580 0.0 27.10626 6 CGAGACC 4795 0.0 25.174776 86-87 GAGACCG 4740 0.0 24.949347 88-89 GACCGAG 4770 0.0 24.87752 90-91 AGACCGA 4935 0.0 24.664879 88-89 ACCGAGG 5085 0.0 24.15321 90-91 ACGCAGA 21285 0.0 23.761135 7 CACGAGA 5140 0.0 23.678345 84-85 ACGAGAC 5020 0.0 23.426964 86-87 TCTCCGA 5010 0.0 22.728607 74-75 CCCACGA 5220 0.0 22.686733 82-83 GCCCACG 5155 0.0 21.964748 82-83 CGCAGAG 23195 0.0 21.767931 8 GTGGTAT 3665 0.0 21.417183 1 >>END_MODULE