##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139201_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6767422 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.997198490060175 31.0 31.0 34.0 30.0 34.0 2 32.17533899910483 33.0 31.0 34.0 30.0 34.0 3 32.19026033842725 34.0 31.0 34.0 30.0 34.0 4 35.953687829723044 37.0 35.0 37.0 35.0 37.0 5 35.81238527758428 37.0 35.0 37.0 35.0 37.0 6 35.83565706409324 37.0 35.0 37.0 35.0 37.0 7 35.77487749397038 37.0 35.0 37.0 33.0 37.0 8 35.762772293496695 37.0 35.0 37.0 33.0 37.0 9 37.53366732560789 39.0 37.0 39.0 35.0 39.0 10-11 37.408046668288165 39.0 37.0 39.0 34.0 39.0 12-13 37.383469879667615 39.0 37.0 39.0 34.0 39.0 14-15 38.611186135577185 40.0 38.0 41.0 34.0 41.0 16-17 38.56658229677416 40.0 38.0 41.0 34.0 41.0 18-19 38.586627670034474 40.0 38.0 41.0 34.0 41.0 20-21 38.56669941781262 40.0 38.0 41.0 34.0 41.0 22-23 38.482573382407544 40.0 38.0 41.0 34.0 41.0 24-25 38.42112442607565 40.0 38.0 41.0 34.0 41.0 26-27 38.2416106129579 40.0 38.0 41.0 33.5 41.0 28-29 38.1281905297152 40.0 38.0 41.0 33.0 41.0 30-31 37.97571759376342 40.0 37.0 41.0 33.0 41.0 32-33 37.79853575842006 40.0 37.0 41.0 33.0 41.0 34-35 37.886147340184515 40.0 37.0 41.0 33.0 41.0 36-37 37.85690314093189 40.0 37.0 41.0 33.0 41.0 38-39 37.81152373682377 40.0 37.0 41.0 33.0 41.0 40-41 37.727077250052105 40.0 37.0 41.0 33.0 41.0 42-43 37.623372569944046 40.0 37.0 41.0 32.0 41.0 44-45 37.67627193002332 40.0 37.0 41.0 32.0 41.0 46-47 37.668152220529194 40.0 37.0 41.0 32.0 41.0 48-49 37.60119595982428 40.0 36.5 41.0 32.0 41.0 50-51 37.49459491076318 40.0 36.0 41.0 32.0 41.0 52-53 37.29318248584177 39.0 36.0 41.0 31.0 41.0 54-55 37.15674505190971 39.0 35.5 41.0 31.0 41.0 56-57 36.97522656819415 39.0 35.0 41.0 31.0 41.0 58-59 36.823168325325824 39.0 35.0 40.0 31.0 41.0 60-61 36.5944062291818 38.0 35.0 40.0 31.0 41.0 62-63 36.37039422194507 38.0 35.0 40.0 30.0 41.0 64-65 36.05992453363386 37.5 34.5 40.0 30.0 41.0 66-67 35.76671899969274 37.0 34.0 40.0 29.5 41.0 68-69 35.463346986191034 36.5 34.0 39.0 29.0 41.0 70-71 35.175120470945345 36.0 34.0 39.0 29.0 41.0 72-73 34.90026258796462 35.5 34.0 39.0 29.0 40.0 74-75 34.548643857964905 35.0 33.0 37.5 29.0 40.0 76-77 33.28364810287786 34.5 31.5 36.0 27.0 39.0 78-79 33.97738105347406 35.0 33.0 37.0 29.0 39.0 80-81 33.91517042861453 35.0 33.0 36.0 29.0 39.0 82-83 33.65567046898036 35.0 33.0 36.0 29.0 37.5 84-85 33.50056091809893 35.0 33.0 35.5 29.0 37.0 86-87 33.28798627612716 35.0 33.0 35.0 29.0 37.0 88-89 33.201081596825915 35.0 33.0 35.0 29.0 36.0 90-91 33.086749981582045 35.0 33.0 35.0 29.0 36.0 92-93 32.9681930660693 35.0 33.0 35.0 29.0 36.0 94-95 32.94127231037935 35.0 33.0 35.0 29.0 35.5 96-97 33.01905968780496 34.0 33.0 35.0 29.0 35.0 98-99 33.16871503210511 34.0 33.0 35.0 29.0 35.0 100 31.98115540284574 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 3.0 19 4.0 20 40.0 21 230.0 22 1271.0 23 4170.0 24 11213.0 25 24189.0 26 43927.0 27 69665.0 28 99317.0 29 130698.0 30 164554.0 31 202496.0 32 247082.0 33 309061.0 34 404518.0 35 554968.0 36 846336.0 37 1366642.0 38 1545659.0 39 715553.0 40 25825.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.60975922589134 20.14306186314375 14.316204900477612 23.9309740104873 2 15.023165394444145 21.41019135499456 40.55018292046809 23.016460330093203 3 18.17510419772847 26.216364222594663 30.551929523532007 25.056602056144868 4 12.83064658890786 18.35334045963145 38.37978479840625 30.43622815305444 5 13.46437387826561 37.62679495973504 35.42563179893318 13.483199363066174 6 30.052241459155347 37.811680725688454 18.6947555509321 13.441322264224102 7 26.72969115861254 32.499894346768976 23.067971821470568 17.702442673147914 8 24.917479654734105 36.164436028963465 20.848633349597527 18.0694509667049 9 25.811941386247227 16.603383090340753 20.980057102985448 36.60461842042657 10-11 24.419956373342757 26.527553623817163 28.62708280937704 20.425407193463034 12-13 25.365645199256853 24.17664720430427 28.570026897986693 21.887680698452186 14-15 22.427432484630042 25.363203299572568 26.325475195724458 25.88388902007293 16-17 22.036187835221344 28.597634201949152 26.82268720269966 22.543490760129842 18-19 22.140812070023976 27.736188549350587 28.450696920142793 21.67230246048264 20-21 23.043255797973362 26.846930252163858 28.378303792857455 21.731510157005317 22-23 22.822285490317558 26.756884297222634 28.182160387380456 22.23866982507935 24-25 22.57119881268792 26.905567890540233 28.328538949808273 22.194694346963573 26-27 22.437510107101446 27.01964750275198 28.28440035856502 22.258442031581556 28-29 22.4518748615074 27.05248901954822 28.258379935284417 22.237256183659962 30-31 22.820633585363765 26.78134955051429 28.17903099301689 22.21898587110506 32-33 22.593185717702465 26.94113351678547 28.07471861601083 22.390962149501238 34-35 22.714137279102104 27.011434276430407 28.091792130257925 22.182636314209564 36-37 22.78811202547581 26.911789280584465 27.92201458312545 22.37808411081428 38-39 22.49171513581218 27.15336867145256 28.037739642546544 22.317176550188723 40-41 22.668546241091022 26.95551362451587 28.001631624117433 22.37430851027567 42-43 22.573426206358384 27.1035229762622 27.73061197272831 22.592438844651106 44-45 22.561331926354416 27.166613825400237 27.615554148850386 22.65650009939496 46-47 22.727858650131836 27.123521910638328 27.41230978834247 22.73630965088737 48-49 22.741516050841888 27.331130357393018 27.27682900174268 22.65052459002241 50-51 22.72539388040033 27.370951990946125 27.236537248867972 22.667116879785574 52-53 22.88687370607682 27.250818987701603 27.178887051142443 22.683420255079138 54-55 22.897715764998058 27.20354823191831 27.140262756533918 22.758473246549713 56-57 22.904200199936533 27.38283045221388 26.960988209064485 22.7519811387851 58-59 22.71389261808557 27.279172655253745 27.14118057962879 22.86575414703189 60-61 22.956026908341855 27.26916932986221 27.152555433363272 22.622248328432658 62-63 22.737322021355112 27.273581070173726 27.251625415945053 22.737471492526108 64-65 22.80613951754612 27.20976640254012 27.15204249445053 22.83205158546323 66-67 22.84758920459754 27.322748553163862 27.109854924050786 22.719807318187815 68-69 22.775926584096442 27.406531113953836 27.100979371985574 22.716562929964145 70-71 22.77030762863748 27.269141030946876 26.91170781220086 23.048843528214785 72-73 22.784251349166468 27.30415783608993 26.78572833140335 23.12586248334025 74-75 22.706736394215625 27.346437250947275 27.018394724750422 22.928431630086674 76-77 22.8281843714746 27.14097382589972 26.947065144423394 23.083776658202286 78-79 22.71209554125001 27.124251320869142 26.799482443057315 23.364170694823535 80-81 22.92800296233261 27.32546216994519 26.849118428238373 22.897416439483827 82-83 23.087336037680757 26.99854259828302 26.985645074200548 22.92847628983568 84-85 22.856268515610413 27.051593095367473 26.930861971887982 23.161276417134133 86-87 22.685861429842106 27.35929566511821 26.924771934127495 23.030070970912185 88-89 23.100360517560187 27.166720549500933 26.83722332737124 22.89569560556764 90-91 23.10947965868775 27.145690519010724 26.921877283895878 22.82295253840565 92-93 22.885038025581984 26.960505145938196 27.06090009248685 23.093556735992962 94-95 22.811116055185632 27.30971217861779 27.1086486299102 22.77052313628638 96-97 23.07128195909904 27.171233048509276 27.227459324783037 22.53002566760865 98-99 23.91211651294609 29.358448608401588 27.376764621279452 19.35267025737287 100 22.866945195234983 30.391731097253384 21.15050553229577 25.590818175215862 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1507.0 1 1298.0 2 1608.0 3 2240.0 4 2844.5 5 4529.5 6 6154.5 7 7667.5 8 9098.5 9 9488.5 10 8853.0 11 7941.5 12 8229.5 13 10352.0 14 15790.5 15 24091.5 16 31179.5 17 35210.5 18 36374.0 19 35073.0 20 32309.0 21 29429.5 22 27520.0 23 28228.5 24 32666.5 25 40492.5 26 50869.0 27 62489.0 28 75193.0 29 89494.0 30 103843.5 31 117613.0 32 132306.0 33 146242.0 34 159598.5 35 172804.5 36 186326.0 37 199818.5 38 211226.0 39 221061.5 40 230808.0 41 239395.0 42 245294.5 43 250980.0 44 257563.5 45 266803.5 46 275863.5 47 285512.0 48 290962.5 49 288554.0 50 286031.0 51 283101.0 52 271381.0 53 254335.0 54 241772.0 55 229359.5 56 214637.0 57 196887.5 58 177190.0 59 156202.0 60 133410.5 61 114002.5 62 94985.5 63 77167.5 64 63271.5 65 49900.0 66 39283.0 67 29647.5 68 20801.5 69 15432.0 70 11440.0 71 7820.0 72 5469.5 73 3958.0 74 2901.5 75 2028.5 76 1276.0 77 718.5 78 496.5 79 367.5 80 256.5 81 174.0 82 122.5 83 84.0 84 60.5 85 45.5 86 33.0 87 22.5 88 12.0 89 6.0 90 5.5 91 5.5 92 4.5 93 4.0 94 3.5 95 3.0 96 3.0 97 2.5 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 1.4776675667632372E-5 14-15 0.0 16-17 9.604839183961041E-4 18-19 0.0016475993369410094 20-21 0.0 22-23 0.002822746727645878 24-25 2.512979910795126E-4 26-27 0.0016710867898149183 28-29 0.005008603404577819 30-31 0.0017259692669319622 32-33 0.005308885039101608 34-35 0.010799730468519866 36-37 5.535327507376198E-4 38-39 3.762254698171988E-5 40-41 0.0025299381058974525 42-43 0.005721774809100613 44-45 0.0016167780293108 46-47 0.0016792874969737838 48-49 0.0030606851461418296 50-51 0.010180219169194371 52-53 0.00613490080447776 54-55 0.00998509872746268 56-57 0.017781408835698 58-59 0.012454818614147026 60-61 0.01575615170763362 62-63 0.014787155051831013 64-65 0.010767600900590408 66-67 0.013253836270434798 68-69 0.00887809832160321 70-71 0.008897207167534758 72-73 0.005942533948909938 74-75 0.010907356972534568 76-77 0.01149068874759796 78-79 0.006573324851818025 80-81 0.003563883712119343 82-83 0.0019244141916664723 84-85 2.8100959629037362E-5 86-87 0.003881983156179491 88-89 5.969116944243441E-4 90-91 5.478874146151707E-4 92-93 0.001454112009650523 94-95 0.001047089122736534 96-97 4.493901514371654E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 191.0 20-21 561.0 22-23 1100.0 24-25 2760.0 26-27 3033.0 28-29 6524.0 30-31 14829.0 32-33 19538.0 34-35 25807.0 36-37 37654.0 38-39 43214.0 40-41 45750.0 42-43 56375.0 44-45 63124.0 46-47 61678.0 48-49 56028.0 50-51 50160.0 52-53 47091.0 54-55 51399.0 56-57 55808.0 58-59 33869.0 60-61 55364.0 62-63 54334.0 64-65 58239.0 66-67 61275.0 68-69 63243.0 70-71 61995.0 72-73 60163.0 74-75 61324.0 76-77 61165.0 78-79 65371.0 80-81 67784.0 82-83 65856.0 84-85 68971.0 86-87 72901.0 88-89 80752.0 90-91 88144.0 92-93 98774.0 94-95 116464.0 96-97 287850.0 98-99 465256.0 100-101 4075704.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.52408865364906 #Duplication Level Percentage of deduplicated Percentage of total 1 90.96695518038919 78.70832894580515 2 6.378584521615753 11.038024252661502 3 1.4756529274214925 3.830385741427019 4 0.5256924596035116 1.8194024391715624 5 0.23908910795959623 1.0343483586608986 6 0.1319012858406898 0.684758312976609 7 0.07661245182142425 0.464017580135923 8 0.05071182019063339 0.3510235220769819 9 0.0320349680018792 0.24946167702702662 >10 0.11965161735811573 1.5872716481859495 >50 0.0026886763726583066 0.15579419527990546 >100 3.9773093077599496E-4 0.061620544872694805 >500 2.7252494268375028E-5 0.015562781718725629 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.4776675667632372E-5 2 1.4776675667632372E-5 5.910670267052949E-5 0.0 0.0 1.4776675667632372E-5 3 1.4776675667632372E-5 5.910670267052949E-5 0.0 0.0 1.4776675667632372E-5 4 1.4776675667632372E-5 1.1821340534105898E-4 0.0 5.910670267052949E-5 1.4776675667632372E-5 5 1.4776675667632372E-5 1.1821340534105898E-4 0.0 5.910670267052949E-5 1.4776675667632372E-5 6 5.910670267052949E-5 1.1821340534105898E-4 0.0 5.910670267052949E-5 1.4776675667632372E-5 7 7.388337833816186E-5 1.1821340534105898E-4 0.0 5.910670267052949E-5 1.4776675667632372E-5 8 7.388337833816186E-5 1.1821340534105898E-4 0.0 7.388337833816186E-5 2.9553351335264744E-5 9 7.388337833816186E-5 2.068734593468532E-4 0.0 8.866005400579423E-5 2.9553351335264744E-5 10-11 8.127171617197805E-5 2.068734593468532E-4 0.0 1.108250675072428E-4 2.9553351335264744E-5 12-13 8.866005400579423E-5 2.068734593468532E-4 0.0 1.2560174317487516E-4 3.694168916908093E-5 14-15 8.866005400579423E-5 2.4381514851593413E-4 0.0 1.7732010801158846E-4 6.649504050434568E-5 16-17 1.3299008100869136E-4 2.659801620173827E-4 0.0 2.068734593468532E-4 7.388337833816186E-5 18-19 1.3299008100869136E-4 2.9553351335264745E-4 0.0 2.142617971806694E-4 8.866005400579423E-5 20-21 1.3299008100869136E-4 3.250868646879122E-4 0.0 2.585918241835665E-4 1.034367296734266E-4 22-23 1.3299008100869136E-4 3.9158190519225785E-4 0.0 5.393486618685816E-4 1.1821340534105898E-4 24-25 1.3299008100869136E-4 4.654652835304197E-4 0.0 0.0015072209180985018 1.4776675667632373E-4 26-27 1.4776675667632373E-4 5.17183648367133E-4 0.0 0.004440391038123527 1.4776675667632373E-4 28-29 1.4776675667632373E-4 5.245719862009492E-4 0.0 0.01489488907297343 1.625434323439561E-4 30-31 1.5515509451013992E-4 5.467369997023977E-4 0.0 0.01649815838291154 1.7732010801158846E-4 32-33 1.625434323439561E-4 5.54125337536214E-4 0.0 0.01975641536762448 1.7732010801158846E-4 34-35 1.625434323439561E-4 6.945037563787214E-4 0.0 0.02396037959506589 1.7732010801158846E-4 36-37 1.625434323439561E-4 8.274938373874128E-4 0.0 0.03115662064520286 1.7732010801158846E-4 38-39 1.625434323439561E-4 8.570471887226776E-4 0.0 0.0499377754187636 2.068734593468532E-4 40-41 1.625434323439561E-4 9.53095580562288E-4 0.0 0.07113491666398224 2.068734593468532E-4 42-43 1.625434323439561E-4 9.974256075651851E-4 0.0 0.0840792845488282 2.068734593468532E-4 44-45 1.625434323439561E-4 0.0011378040264076925 0.0 0.10096163649909817 2.068734593468532E-4 46-47 1.9209678367922083E-4 0.0012412407560811192 0.0 0.11910739421895074 2.216501350144856E-4 48-49 1.99485121513037E-4 0.0012412407560811192 0.0 0.13717188022263133 2.3642681068211796E-4 50-51 2.216501350144856E-4 0.001389007512757443 0.0 0.1533301750651873 2.3642681068211796E-4 52-53 2.216501350144856E-4 0.0014037841884250754 0.0 0.19602737940681103 2.733684998511989E-4 54-55 2.216501350144856E-4 0.0014185608640927077 0.0 0.24650450348744324 2.8075683768501506E-4 56-57 2.2903847284830179E-4 0.0014481142154279725 0.0 0.2973141027705971 2.8814517551883125E-4 58-59 2.3642681068211796E-4 0.0014481142154279725 0.0 0.4956761969328941 2.9553351335264745E-4 60-61 2.4381514851593413E-4 0.0014628908910956048 0.0 0.6728780915391415 3.17698526854096E-4 62-63 2.8075683768501506E-4 0.0015072209180985018 0.0 0.6817367086018871 3.472518781893607E-4 64-65 2.8075683768501506E-4 0.0016845410261100903 0.0 0.6893171432193825 3.546402160231769E-4 66-67 2.8075683768501506E-4 0.0017140943774453551 0.0 0.6959370939184818 3.546402160231769E-4 68-69 2.8814517551883125E-4 0.001751036066614436 0.0 0.702158074374555 3.620285538569931E-4 70-71 2.9553351335264745E-4 0.001787977755783517 0.0 0.7071895324393839 3.694168916908093E-4 72-73 3.103101890202798E-4 0.0017953660936173331 0.0 0.7114599917073297 4.137469186937064E-4 74-75 3.103101890202798E-4 0.0018470844584540466 0.0 0.7148881804622202 4.137469186937064E-4 76-77 3.103101890202798E-4 0.0019209678367922082 0.0 0.7180208357037584 4.211352565275226E-4 78-79 3.103101890202798E-4 0.0019652978637951053 0.0 0.7200230752567225 4.285235943613388E-4 80-81 3.103101890202798E-4 0.0019726862016289214 0.0 0.7209983358507863 4.433002700289712E-4 82-83 3.103101890202798E-4 0.001980074539462738 0.0 0.7215081311613196 5.097953105333169E-4 84-85 3.103101890202798E-4 0.0019948512151303703 0.0 0.7217371696341679 5.245719862009492E-4 86-87 3.103101890202798E-4 0.002039181242133267 0.0 0.7218627713773429 5.319603240347654E-4 88 3.103101890202798E-4 0.002142617971806694 0.0 0.7218701597151767 5.319603240347654E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8275 0.0 51.91895 1 GTATCAA 15150 0.0 36.72367 1 TCAACGC 18605 0.0 29.268211 4 ATCAACG 18820 0.0 28.933851 3 CAACGCA 19025 0.0 28.622082 5 TATCAAC 19470 0.0 28.141481 2 AACGCAG 19535 0.0 27.918097 6 CGAGACC 5165 0.0 24.589115 86-87 ACGCAGA 22530 0.0 24.244335 7 GAGACCG 5270 0.0 24.001122 88-89 GACCGAG 5400 0.0 23.935888 90-91 ACCGAGG 5610 0.0 23.733223 90-91 AGACCGA 5455 0.0 23.613583 88-89 GTGGTAT 3870 0.0 22.923517 1 CGCAGAG 24435 0.0 22.371489 8 TGGTATC 3750 0.0 22.192587 2 ACGAGAC 5655 0.0 22.05565 86-87 CACGAGA 5825 0.0 21.939789 84-85 CCCACGA 5775 0.0 21.592094 82-83 ATCTCCG 5555 0.0 21.483746 74-75 >>END_MODULE