##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139196_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23408977 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.426439352732075 31.0 31.0 34.0 30.0 34.0 2 31.531394601310428 31.0 31.0 34.0 30.0 34.0 3 31.60725054324245 31.0 31.0 34.0 30.0 34.0 4 35.41951136950581 37.0 35.0 37.0 33.0 37.0 5 35.2198130230125 37.0 35.0 37.0 32.0 37.0 6 35.23577531816106 37.0 35.0 37.0 32.0 37.0 7 35.14249896524739 37.0 35.0 37.0 32.0 37.0 8 35.07231114798395 37.0 35.0 37.0 32.0 37.0 9 36.61060660617506 39.0 35.0 39.0 32.0 39.0 10-11 36.53566270751601 38.5 35.0 39.0 32.0 39.0 12-13 36.50146599742483 38.5 35.0 39.0 32.0 39.0 14-15 37.58347105471546 39.0 36.0 41.0 32.0 41.0 16-17 37.548393571406386 39.0 36.0 41.0 32.0 41.0 18-19 37.5764107718163 39.0 36.0 41.0 32.0 41.0 20-21 37.58620027491615 39.0 36.0 41.0 32.0 41.0 22-23 37.48771247712361 39.0 36.0 41.0 32.0 41.0 24-25 37.31582052646209 39.0 36.0 41.0 31.0 41.0 26-27 37.1783190804366 39.0 36.0 41.0 31.0 41.0 28-29 37.016347990225704 39.0 36.0 40.5 31.0 41.0 30-31 36.875911574911854 39.0 36.0 40.0 30.0 41.0 32-33 36.70814627112409 38.5 35.0 40.0 30.0 41.0 34-35 36.556511892685606 38.0 35.0 40.0 30.0 41.0 36-37 36.40579070878927 38.0 35.0 40.0 30.0 41.0 38-39 36.282467844490114 38.0 35.0 40.0 30.0 41.0 40-41 36.157005300272644 38.0 35.0 40.0 30.0 41.0 42-43 36.00214894920137 38.0 34.0 40.0 29.0 41.0 44-45 35.84491030469182 38.0 34.0 40.0 29.0 41.0 46-47 35.99427567054167 38.0 34.0 40.0 29.0 41.0 48-49 36.132768118489366 38.0 34.5 40.0 29.0 41.0 50-51 36.344610868490264 38.0 35.0 40.0 30.0 41.0 52-53 36.319428914135 38.0 35.0 40.0 29.0 41.0 54-55 36.21877215299529 38.0 34.0 40.0 29.0 41.0 56-57 36.067568181390314 38.0 34.0 40.0 29.0 41.0 58-59 35.86855344214813 38.0 34.0 40.0 28.0 41.0 60-61 35.69438978348123 38.0 34.0 40.0 28.0 41.0 62-63 35.49148268310676 37.0 34.0 40.0 28.0 41.0 64-65 35.27215260128028 37.0 33.0 40.0 28.0 41.0 66-67 35.02127072694019 36.5 33.0 39.0 28.0 41.0 68-69 34.75532239293098 36.0 33.0 39.0 28.0 41.0 70-71 34.44509466297352 35.5 32.5 39.0 27.0 40.0 72-73 34.19385749293028 35.0 32.0 38.5 27.0 40.0 74-75 33.83812704297998 35.0 32.0 37.5 26.0 40.0 76-77 32.14959155333882 33.5 30.0 36.0 25.0 38.5 78-79 33.19230489133309 34.5 31.5 36.0 26.0 39.0 80-81 33.292788949085306 35.0 32.0 36.0 26.5 39.0 82-83 33.1145912804228 35.0 32.0 36.0 26.5 37.5 84-85 32.91681978893921 34.5 32.0 35.5 26.0 37.0 86-87 32.72785351685099 34.0 32.0 35.0 26.0 37.0 88-89 32.56550569258493 34.0 31.0 35.0 26.0 36.0 90-91 32.46156542927649 34.0 31.0 35.0 26.0 36.0 92-93 32.40478673414116 34.0 31.0 35.0 26.5 36.0 94-95 32.42651407751366 34.0 31.0 35.0 27.0 35.5 96-97 32.51182085874882 34.0 32.0 35.0 27.0 35.0 98-99 32.64893234155556 34.0 32.0 35.0 28.0 35.0 100 31.598003766244354 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 4.0 19 45.0 20 385.0 21 2275.0 22 10582.0 23 35146.0 24 86639.0 25 172529.0 26 289343.0 27 428452.0 28 575707.0 29 725594.0 30 874363.0 31 1036870.0 32 1224589.0 33 1461429.0 34 1789226.0 35 2249377.0 36 2953416.0 37 3879926.0 38 3828350.0 39 1727457.0 40 57271.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.27348140843575 21.46961398612165 14.913253150703682 23.34365145473892 2 14.78328130677498 22.474673535252858 40.79921893665517 21.942826221316988 3 17.767721320264258 27.361116154291416 31.53293078074839 23.33823174469594 4 12.474533251290659 19.083640466494963 39.19235441341339 29.249471868800985 5 12.413203703861129 38.630158848889465 36.38029120196069 12.57634624528872 6 28.978250523292836 39.518395015724096 18.758090112182177 12.74526434880089 7 25.34792955710965 33.365370900231994 24.15636104046751 17.13033850219085 8 24.096601914726985 37.39931480132601 21.247032708862072 17.257050575084936 9 25.356729025729468 16.287164248940325 21.503610376207636 36.85249634912257 10-11 23.757031886314532 27.184881825691836 29.545151239755636 19.512935048237996 12-13 24.560279585855156 24.966652984470585 29.48978751187082 20.983279917803443 14-15 21.71003509277959 26.24273800617213 27.13968567530367 24.90754122574461 16-17 21.162286734850454 29.38012689880869 27.687214360630886 21.770372005709966 18-19 21.253782863526766 28.41074578020778 29.43169708350524 20.903774272760213 20-21 22.185115644222382 27.498311897657302 29.4032663154229 20.913306142697415 22-23 21.94164330332947 27.43354161072598 29.194423359565562 21.430391726378986 24-25 21.69302789542293 27.588399272512977 29.32059951315331 21.397973318910786 26-27 21.58211878319008 27.65863151765375 29.244400249820252 21.514849449335923 28-29 21.683695573069397 27.681435231363956 29.20353349629484 21.431335699271813 30-31 21.977610211495467 27.46574316134085 29.099504051191605 21.457142575972078 32-33 21.79627265516523 27.651211788145186 28.94295134093372 21.609564215755864 34-35 21.919440217737026 27.696008767345386 28.943333167324358 21.44121784759323 36-37 21.992730065340226 27.581638194411518 28.81359571565157 21.612036024596684 38-39 21.676913038003814 27.857415819306265 28.882612611489478 21.58305853120044 40-41 21.899993884413657 27.649107014401547 28.8319362078349 21.618962893349895 42-43 21.765594755870143 27.82716023423037 28.492813063709598 21.914431946189882 44-45 21.829357900103854 27.85386642580192 28.32595640240542 21.990819271688807 46-47 21.968488488552918 27.84202104310444 28.13968866148225 22.04980180686039 48-49 22.016834962004168 28.08593196098373 27.936048023693022 21.96118505331908 50-51 21.991887094629366 28.07681589278384 27.90053133979729 22.030765672789503 52-53 22.168401124874464 27.94587833661419 27.823816528221585 22.06190401028977 54-55 22.203027179669128 27.860441420859406 27.84724299990983 22.089288399561642 56-57 22.169335781489046 28.04414038994041 27.683247897129988 22.103275931440564 58-59 22.069215560988493 28.018268036061894 27.800044084144933 22.11247231880468 60-61 22.12046177143265 28.015956727675917 27.75640431821605 22.107177182675382 62-63 22.076915728286618 28.02886789356235 27.890662087649638 22.0035542905014 64-65 22.1362081171868 27.978349823332316 27.740296736528176 22.145145322952704 66-67 22.179146035564614 28.145299789736722 27.477091010288348 22.198463164410317 68-69 22.155087746120618 28.055310260412835 27.57910520900288 22.21049678446366 70-71 22.136633314254357 27.83932100628449 27.654313684819382 22.36973199464177 72-73 22.195785093353884 27.835451337767648 27.533572128223415 22.435191440655053 74-75 22.10498264113229 27.90126451857471 27.55081905371831 22.44293378657469 76-77 22.209525190332872 27.915996467931176 27.512884801965804 22.361593539770148 78-79 22.130227214053377 27.93690493761027 27.524355629179027 22.408512219157327 80-81 22.184926851506713 27.876247649423895 27.52198485260962 22.41684064645977 82-83 22.31411146841837 27.76226871636983 27.73035813968876 22.193261675523036 84-85 22.300975751388215 27.782507890676882 27.655030135358082 22.261486222576817 86-87 22.144678099555925 27.93555828728899 27.659763263405623 22.26000034974946 88-89 22.34480366592094 27.730790646304243 27.579886464550874 22.344519223223944 90-91 22.356675103787595 27.732205769693465 27.708360995166604 22.202758131352336 92-93 22.364622031348848 27.72395766785123 27.803735223066212 22.107685077733713 94-95 22.060181796988605 27.808748727105748 27.913444916604348 22.217624559301303 96-97 22.061981122033426 27.90676710617231 28.02711435414271 22.00413741765155 98-99 23.17087638018154 29.87884391131896 28.19289263531946 18.75738707318004 100 22.298159145107167 30.649287917822765 22.083056939347024 24.969495997723044 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 8321.0 1 6744.0 2 7588.5 3 10502.5 4 13147.0 5 20635.0 6 28319.5 7 35673.0 8 42044.5 9 42977.0 10 38561.0 11 33188.0 12 34654.5 13 44272.0 14 69024.5 15 104907.0 16 134097.0 17 150704.5 18 157061.5 19 155244.5 20 147521.0 21 137373.5 22 131770.5 23 138420.5 24 159347.5 25 196735.0 26 248010.5 27 304880.5 28 369755.5 29 443916.5 30 513980.5 31 575889.0 32 633377.5 33 683536.0 34 729031.5 35 767429.0 36 803703.0 37 828872.5 38 833640.0 39 835512.0 40 838929.0 41 837801.0 42 831137.5 43 829792.0 44 836251.5 45 856084.0 46 877500.0 47 900607.0 48 912916.0 49 901629.5 50 890788.0 51 877188.5 52 837429.5 53 779412.0 54 734028.0 55 695599.0 56 653066.0 57 599663.5 58 539913.0 59 475745.0 60 406797.5 61 347851.5 62 288817.0 63 233519.0 64 189982.0 65 149940.5 66 118479.0 67 88995.5 68 61462.0 69 44799.5 70 32928.5 71 22607.0 72 15768.5 73 11184.5 74 8335.5 75 6047.0 76 4055.5 77 2555.5 78 1903.5 79 1522.5 80 1043.5 81 656.5 82 488.5 83 311.5 84 189.0 85 140.5 86 104.0 87 77.5 88 60.5 89 43.5 90 26.0 91 17.5 92 13.5 93 5.5 94 1.0 95 2.0 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.10443002272162512 3 1.1534036707370851E-4 4 8.970917439066218E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.009718493892321736 10-11 0.0010722382272407719 12-13 8.99227676630209E-4 14-15 1.3029189613881888E-4 16-17 3.801960247985207E-4 18-19 5.254394500024498E-4 20-21 1.3030161491549343E-4 22-23 2.136499728482932E-6 24-25 0.15975026106734683 26-27 0.001586909154369903 28-29 0.0016096113661850447 30-31 0.0023240460750281397 32-33 0.001982218127453573 34-35 0.0013939380783359538 36-37 2.928023393995978E-4 38-39 3.2094745435177455E-4 40-41 7.589429047252775E-4 42-43 9.005298664500899E-4 44-45 8.512697741567847E-5 46-47 0.0 48-49 4.58080471958478E-6 50-51 0.0 52-53 0.0 54-55 1.834417223051682E-4 56-57 0.0 58-59 7.914131386668056E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.004101197036885141 70-71 0.006532117896498592 72-73 0.0 74-75 2.0062674210337764E-4 76-77 0.0014765777058915075 78-79 0.010026404128797345 80-81 5.498581393493385E-5 82-83 6.421196783773289E-5 84-85 1.4741223769905828E-4 86-87 4.033352947912848E-5 88-89 3.8121171663008254E-5 90-91 0.0 92-93 1.2235819854838516E-5 94-95 1.8825731800906216E-5 96-97 0.0 98-99 3.5949013514132907E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1077.0 20-21 3518.0 22-23 7510.0 24-25 14120.0 26-27 16420.0 28-29 30544.0 30-31 61118.0 32-33 78046.0 34-35 109837.0 36-37 145898.0 38-39 167469.0 40-41 181491.0 42-43 212017.0 44-45 256342.0 46-47 237500.0 48-49 216866.0 50-51 186012.0 52-53 176107.0 54-55 190761.0 56-57 213214.0 58-59 218920.0 60-61 217921.0 62-63 218913.0 64-65 231649.0 66-67 249274.0 68-69 259326.0 70-71 256170.0 72-73 248211.0 74-75 253971.0 76-77 233706.0 78-79 260070.0 80-81 277227.0 82-83 271986.0 84-85 277240.0 86-87 298321.0 88-89 328421.0 90-91 361026.0 92-93 395713.0 94-95 471929.0 96-97 997725.0 98-99 1536938.0 100-101 1.3038453E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.61032469651076 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4839109476238 74.8177884944448 2 7.203765945136836 12.04618419421115 3 1.7409607461255985 4.366868798023228 4 0.6805136759949812 2.27591877641426 5 0.3267025483687035 1.3657853074142405 6 0.17142237461291734 0.8599608240979754 7 0.10017759463580185 0.5863116850370378 8 0.06966023439190207 0.46594518527535816 9 0.04619529217885702 0.3476163040671977 >10 0.1696304737073859 2.2555576555200783 >50 0.005424952581408734 0.3017824071234165 >100 0.0015324280052345285 0.2066309730979128 >500 5.147739081068188E-5 0.03264219567713431 >1k 5.130924583091178E-5 0.07100719959622541 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.27186544717439E-6 2 0.0 2.5631192683046336E-5 0.0 0.0 4.27186544717439E-6 3 0.0 2.5631192683046336E-5 0.0 0.0 4.27186544717439E-6 4 0.0 8.970917439066218E-5 0.0 4.27186544717439E-6 8.54373089434878E-6 5 0.0 8.970917439066218E-5 0.0 8.54373089434878E-6 8.54373089434878E-6 6 3.417492357739512E-5 9.398103983783657E-5 0.0 8.54373089434878E-6 1.2815596341523168E-5 7 3.417492357739512E-5 9.398103983783657E-5 0.0 8.54373089434878E-6 1.2815596341523168E-5 8 3.417492357739512E-5 1.0679663617935973E-4 0.0 8.54373089434878E-6 1.708746178869756E-5 9 3.417492357739512E-5 2.0077767601719632E-4 0.0 1.708746178869756E-5 1.708746178869756E-5 10-11 3.6310856300982314E-5 2.0077767601719632E-4 0.0 2.776712540663353E-5 1.708746178869756E-5 12-13 3.844678902456951E-5 2.0077767601719632E-4 0.0 2.9903058130220728E-5 1.9223394512284754E-5 14-15 3.844678902456951E-5 2.669915904483993E-4 0.0 3.417492357739512E-5 4.05827217481567E-5 16-17 5.9806116260441456E-5 2.712634558955738E-4 0.0 5.126238536609267E-5 5.126238536609267E-5 18-19 6.407798170761584E-5 2.968946485786201E-4 0.0 7.475764532555181E-5 5.126238536609267E-5 20-21 6.407798170761584E-5 3.225258412616664E-4 0.0 1.4951529065110363E-4 5.126238536609267E-5 22-23 6.407798170761584E-5 3.5242889939188715E-4 0.0 5.382550463439731E-4 5.980611626044145E-5 24-25 6.407798170761584E-5 3.844678902456951E-4 0.0 0.0016233088699262681 6.621391443120304E-5 26-27 6.621391443120304E-5 4.0582721748156703E-4 0.0 0.004489730584980284 6.834984715479024E-5 28-29 6.834984715479024E-5 4.079631502051542E-4 0.0 0.015011335181370804 6.834984715479024E-5 30-31 6.834984715479024E-5 4.335943428882005E-4 0.0 0.017636396498659467 6.834984715479024E-5 32-33 7.048577987837744E-5 4.4000214105896214E-4 0.0 0.023439725708645876 7.262171260196463E-5 34-35 7.262171260196463E-5 4.93400459148642E-4 0.0 0.030949665164778453 7.689357804913902E-5 36-37 7.262171260196463E-5 5.660221717506066E-4 0.0 0.04488449025346131 7.689357804913902E-5 38-39 7.262171260196463E-5 5.767018353685426E-4 0.0 0.08190447621867457 7.689357804913902E-5 40-41 7.689357804913902E-5 6.386438843525711E-4 0.0 0.11506910361781295 8.330137621990059E-5 42-43 7.689357804913902E-5 6.600032115884431E-4 0.0 0.13541386280998097 8.970917439066218E-5 44-45 8.11654434963134E-5 7.689357804913902E-4 0.0 0.1641186626822693 1.0252477073218535E-4 46-47 8.543730894348779E-5 8.629168203292267E-4 0.0 0.19662328686981922 1.1106850162653414E-4 48-49 8.543730894348779E-5 8.629168203292267E-4 0.0 0.22742770860939376 1.2815596341523167E-4 50-51 1.0466070345577255E-4 9.718493892321736E-4 0.0 0.2521810329430457 1.2815596341523167E-4 52-53 1.1106850162653414E-4 9.953446491916327E-4 0.0 0.3172671748961947 1.4524342520392923E-4 54-55 1.1106850162653414E-4 0.0010060243128095687 0.0 0.3980267911750266 1.64466819716214E-4 56-57 1.1106850162653414E-4 0.0010252477073218534 0.0 0.48012777320427114 1.6873868516338838E-4 58-59 1.1106850162653414E-4 0.0010273836400454407 0.0 0.5260524626941194 1.7301055061056276E-4 60-61 1.1320443435012132E-4 0.0010444711018341383 0.0 0.5582452407040257 1.7514648333414996E-4 62-63 1.1961223252088291E-4 0.0010572866981756615 0.0 0.5826568158019036 1.8369021422849876E-4 64-65 1.1961223252088291E-4 0.0011448599398427364 0.0 0.5893465570921788 1.8796207967567314E-4 66-67 1.238840979680573E-4 0.0011491318052899108 0.0 0.5954660043452561 1.9650581057002194E-4 68-69 1.238840979680573E-4 0.0011897145270380674 0.0 0.6017029278981307 2.0077767601719632E-4 70-71 1.2815596341523167E-4 0.0012089379215503523 0.0 0.6074122760682793 2.1359327235871947E-4 72-73 1.3883562703316765E-4 0.0012089379215503523 0.0 0.6119126863168775 2.434963304889402E-4 74-75 1.4097155975675485E-4 0.001238840979680573 0.0 0.6152895959528688 2.434963304889402E-4 76-77 1.4737935792751646E-4 0.0012751518359815552 0.0 0.6184635919801194 2.434963304889402E-4 78-79 1.5378715609827803E-4 0.0012858314995994912 0.0 0.6206700104835849 2.434963304889402E-4 80-81 1.559230888218652E-4 0.0012879674323230785 0.0 0.6214731211876539 2.5631192683046335E-4 82-83 1.580590215454524E-4 0.0012986470959410145 0.0 0.6220540948884695 2.7339938861916096E-4 84-85 1.580590215454524E-4 0.0013135986250061248 0.0 0.6223061349498528 2.776712540663353E-4 86-87 1.580590215454524E-4 0.0013328220195184095 0.0 0.6224257471823736 2.819431195135097E-4 88 1.623308869926268E-4 0.0014182593284618973 0.0 0.6224321549805444 2.904868504078585E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 31250 0.0 53.482613 1 GTATCAA 56060 0.0 34.916702 1 TCAACGC 70620 0.0 27.226326 4 ATCAACG 71550 0.0 26.860903 3 CAACGCA 72255 0.0 26.639519 5 TATCAAC 73770 0.0 26.207762 2 AACGCAG 73690 0.0 26.165844 6 ACGCAGA 85125 0.0 22.63656 7 CGCAGAG 91410 0.0 21.10739 8 GTACATG 73805 0.0 20.715467 1 TACATGG 74045 0.0 20.300632 2 GTGGTAT 13425 0.0 20.13555 1 ACATGGG 74110 0.0 19.831806 3 TGGTATC 12665 0.0 19.40945 2 GCAGAGT 99435 0.0 19.09934 9 GAGTACT 59210 0.0 19.069128 12-13 AGAGTAC 91180 0.0 18.224598 10-11 CAGAGTA 97625 0.0 18.153803 10-11 CATGGGG 53105 0.0 17.747612 4 GTACTTT 67830 0.0 16.60096 14-15 >>END_MODULE