##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139194_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20640699 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.359097770865223 31.0 31.0 34.0 30.0 34.0 2 31.47255114761375 31.0 31.0 34.0 30.0 34.0 3 31.548043213071416 31.0 31.0 34.0 30.0 34.0 4 35.368024115849956 37.0 35.0 37.0 33.0 37.0 5 35.16228151963264 37.0 35.0 37.0 32.0 37.0 6 35.180592430517976 37.0 35.0 37.0 32.0 37.0 7 35.08609039839203 37.0 35.0 37.0 32.0 37.0 8 35.015555432497706 37.0 35.0 37.0 32.0 37.0 9 36.546263815968636 39.0 35.0 39.0 32.0 39.0 10-11 36.463418801853564 38.0 35.0 39.0 32.0 39.0 12-13 36.42768304503641 38.0 35.0 39.0 32.0 39.0 14-15 37.49146026982904 39.0 36.0 41.0 32.0 41.0 16-17 37.45040383564529 39.0 36.0 41.0 32.0 41.0 18-19 37.474764856558394 39.0 36.0 41.0 32.0 41.0 20-21 37.481980207155964 39.0 36.0 41.0 32.0 41.0 22-23 37.38149712387269 39.0 36.0 41.0 31.5 41.0 24-25 37.2109675981703 39.0 36.0 41.0 31.0 41.0 26-27 37.059113918430725 39.0 36.0 41.0 31.0 41.0 28-29 36.8893013160251 39.0 36.0 40.0 30.0 41.0 30-31 36.74699050218034 39.0 35.0 40.0 30.0 41.0 32-33 36.57911776108499 38.0 35.0 40.0 30.0 41.0 34-35 36.42162688495053 38.0 35.0 40.0 30.0 41.0 36-37 36.26776271444652 38.0 35.0 40.0 30.0 41.0 38-39 36.134919774349775 38.0 35.0 40.0 29.5 41.0 40-41 36.006334727377904 38.0 34.0 40.0 29.0 41.0 42-43 35.845073666095715 38.0 34.0 40.0 29.0 41.0 44-45 35.685288254500094 38.0 34.0 40.0 28.0 41.0 46-47 35.84179480091812 38.0 34.0 40.0 28.5 41.0 48-49 35.979222022047296 38.0 34.0 40.0 28.5 41.0 50-51 36.193057732685375 38.0 34.0 40.0 29.0 41.0 52-53 36.16566823279058 38.0 34.0 40.0 29.0 41.0 54-55 36.06172208737277 38.0 34.0 40.0 28.5 41.0 56-57 35.90427175780931 38.0 34.0 40.0 28.0 41.0 58-59 35.700007260300104 38.0 34.0 40.0 28.0 41.0 60-61 35.524399475355864 37.5 34.0 40.0 28.0 41.0 62-63 35.312629056043356 37.0 33.0 40.0 28.0 41.0 64-65 35.09932452446691 37.0 33.0 39.5 28.0 41.0 66-67 34.84603507724699 36.0 33.0 39.0 28.0 41.0 68-69 34.57288621189654 36.0 32.5 39.0 27.0 40.5 70-71 34.262350359661454 35.0 32.0 39.0 26.5 40.0 72-73 34.003408002820635 35.0 32.0 38.0 26.0 40.0 74-75 33.64554719188121 35.0 32.0 37.0 26.0 39.5 76-77 31.973745207650722 33.5 29.5 35.5 25.0 38.5 78-79 33.01914041589752 34.5 31.0 36.0 26.0 39.0 80-81 33.118236328194875 35.0 32.0 36.0 26.0 38.5 82-83 32.94578275401951 34.5 32.0 36.0 26.0 37.0 84-85 32.76471112151313 34.0 31.0 35.0 26.0 37.0 86-87 32.582130256603165 34.0 31.0 35.0 26.0 36.5 88-89 32.42262286095006 34.0 31.0 35.0 26.0 36.0 90-91 32.328818909417926 34.0 31.0 35.0 26.0 36.0 92-93 32.27863143325652 34.0 31.0 35.0 26.0 36.0 94-95 32.30147633348573 34.0 31.0 35.0 26.5 35.0 96-97 32.40018758747164 34.0 31.0 35.0 27.0 35.0 98-99 32.554070392938044 34.0 31.0 35.0 27.5 35.0 100 31.495497318391813 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 10.0 19 57.0 20 383.0 21 2272.0 22 10289.0 23 33852.0 24 82979.0 25 164076.0 26 273658.0 27 403341.0 28 541460.0 29 677101.0 30 810911.0 31 955602.0 32 1122319.0 33 1331412.0 34 1623596.0 35 2021463.0 36 2632373.0 37 3397632.0 38 3207072.0 39 1311216.0 40 37623.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.312849870055274 21.24006071693599 14.78411172024746 23.662977692761277 2 15.07771562889828 22.247328787445692 40.25818172965202 22.416773854004006 3 18.123216779835584 26.85656804216567 31.15915905673452 23.86105612126423 4 12.812255912861795 18.955730241859257 38.47381593302004 29.758197912258904 5 12.742228351859595 38.398806164461774 36.020461322555015 12.838504161123613 6 29.63260595002136 38.872990686991756 18.511810089377303 12.98259327360958 7 25.919059233410653 33.03829972037284 23.56895471417901 17.473686332037495 8 24.541814208908335 37.004996778452124 20.923584031722957 17.529604980916584 9 25.55079157127029 16.105553560131415 21.110290491924296 37.233364376674 10-11 24.12143883662401 26.8750883276412 29.141525335577207 19.86194750015758 12-13 24.90930761000689 24.608082061524293 29.07202623616898 21.410584092299835 14-15 22.015457298250073 25.82241938313002 26.761056526724747 25.401066791895154 16-17 21.559504762197296 28.926503913071063 27.327650060285226 22.186341264446416 18-19 21.652207376018705 28.040153691320786 29.018965201242036 21.288673731418474 20-21 22.553832887750637 27.128394946102123 28.945188665027434 21.372583501119806 22-23 22.270493292457555 27.111063554838786 28.75036654594578 21.868076606757878 24-25 22.066701621638472 27.269988217627084 28.868221682236584 21.795088478497863 26-27 21.98637414517005 27.305761029973684 28.80933658765451 21.898528237201756 28-29 22.03201212465861 27.35544285068926 28.75682240253447 21.855722622117653 30-31 22.34425471141395 27.13566380184997 28.672568949697876 21.84751253703821 32-33 22.189281657530223 27.281090352495035 28.565232717080008 21.96439527289473 34-35 22.232907074054857 27.391175962650884 28.59186256844024 21.784054394854017 36-37 22.35064781535905 27.30286322035872 28.395869690250862 21.950619274031364 38-39 22.051885429826694 27.519590977257273 28.493314674658848 21.935208918257185 40-41 22.274627787996632 27.301201640713195 28.432304057539554 21.99186651375062 42-43 22.12795135702396 27.4995704082266 28.120764759513634 22.251713475235807 44-45 22.143278196178155 27.56033620189357 27.981602893299613 22.314782708628663 46-47 22.301771374028323 27.518873806914428 27.7732818062691 22.406073012788145 48-49 22.29874850357576 27.769536435024516 27.595563883837098 22.33615117756262 50-51 22.298627804900846 27.77014035626654 27.534771208631014 22.39646063020159 52-53 22.431576120128764 27.682108645306432 27.48373731895027 22.40257791561454 54-55 22.439086704583648 27.576650289622574 27.526970732855794 22.457292272937988 56-57 22.462221912603592 27.739809602405025 27.34986428879559 22.4481041961958 58-59 22.311898152067837 27.66657092868141 27.467041624688466 22.554489294562284 60-61 22.523389650085797 27.65670946387565 27.535807155561145 22.284093730477412 62-63 22.297982378891245 27.70141617768307 27.565699161191493 22.434902282234194 64-65 22.28505820570009 27.647217918540175 27.508537537065358 22.55918633869438 66-67 22.385676002206733 27.759347687753817 27.411830020325944 22.44314628971351 68-69 22.326988595871182 27.82996486121735 27.367786694293216 22.475259848618254 70-71 22.297438848156904 27.642032600465395 27.244704328876413 22.815824222501295 72-73 22.331094624907966 27.65223298146059 27.129850797127453 22.886821596503992 74-75 22.30502296814057 27.728000911101542 27.33042986802997 22.636546252727918 76-77 22.385381155209696 27.486193356891718 27.31687911718791 22.811546370710673 78-79 22.280886614072536 27.509095929103033 27.095324438321562 23.114693018502873 80-81 22.55874221891105 27.677648956672186 27.139172972606872 22.624435851809892 82-83 22.653176094344392 27.388755802505887 27.332297721716937 22.62577038143278 84-85 22.454547847450623 27.401061948249765 27.24213124127689 22.902258963022724 86-87 22.29952588440348 27.723372997773453 27.25706057995531 22.72004053786776 88-89 22.656043244700705 27.559080623894953 27.23591778796206 22.54895834344228 90-91 22.710945663641063 27.545341827506288 27.26293653684031 22.48077597201234 92-93 22.51117834506718 27.273391109895744 27.40984942852182 22.805581116515256 94-95 22.413080971912237 27.626369131834334 27.54980117477383 22.4107487214796 96-97 22.633968447502234 27.45756713714012 27.682345576798006 22.22611883855964 98-99 23.41890133207668 29.62895594278644 27.930143085691206 19.021999639445678 100 22.59966895860254 30.432428227545582 21.663919512859188 25.303983300992694 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5829.0 1 4926.5 2 6213.0 3 8817.5 4 11244.0 5 17986.0 6 24646.0 7 30311.5 8 34774.0 9 35142.0 10 32006.0 11 27921.0 12 29044.0 13 37355.5 14 59113.0 15 90857.5 16 116248.5 17 130017.0 18 134754.0 19 132332.0 20 124352.0 21 113949.0 22 106966.0 23 109546.0 24 123775.0 25 150396.5 26 187361.5 27 227518.0 28 270949.5 29 320999.5 30 369989.5 31 417987.5 32 466524.0 33 510509.0 34 552535.0 35 592201.5 36 634155.5 37 668713.0 38 689146.0 39 708137.5 40 729216.0 41 744694.0 42 751402.0 43 759974.5 44 771870.5 45 791979.0 46 814008.0 47 836308.0 48 852051.0 49 851044.0 50 843321.0 51 827916.5 52 791311.0 53 740872.5 54 698603.5 55 660169.0 56 619419.5 57 570132.5 58 513727.0 59 452190.5 60 384887.5 61 323774.0 62 264873.5 63 213159.5 64 172681.0 65 136961.5 66 109068.5 67 82381.0 68 57952.0 69 42644.0 70 31524.5 71 21979.5 72 15545.5 73 11180.5 74 8239.5 75 5976.5 76 4063.0 77 2531.0 78 1765.5 79 1324.5 80 959.5 81 694.0 82 554.5 83 381.5 84 233.0 85 160.0 86 120.5 87 97.0 88 70.5 89 51.0 90 37.5 91 29.5 92 22.0 93 12.5 94 4.5 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.10191999796130935 3 9.689594330114499E-5 4 8.236155180597324E-5 5 0.0 6 0.0 7 0.0 8 0.0 9 0.008778772463083735 10-11 0.0010561657819824805 12-13 8.987098741181197E-4 14-15 1.380767192041316E-4 16-17 3.367134029714788E-4 18-19 5.135484994960684E-4 20-21 1.2355186913386022E-4 22-23 0.0 24-25 0.14897160963174566 26-27 0.0014699389123951096 28-29 0.001527017886768929 30-31 0.0022225106676864604 32-33 0.0019334676471615135 34-35 0.00140936595121607 36-37 2.483345053000853E-4 38-39 3.3155764420375995E-4 40-41 7.551209160419183E-4 42-43 8.41467815262699E-4 44-45 9.12891164354643E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 1.5934826559372168E-4 56-57 0.0 58-59 7.02168087103195E-5 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0035411313661166317 70-71 0.005736263236542837 72-73 5.844835287281253E-6 74-75 2.456511242016524E-4 76-77 0.0014540276626214517 78-79 0.009180248161779772 80-81 7.080708968607615E-5 82-83 6.561618897612405E-5 84-85 1.585657537296251E-4 86-87 3.8661481517637125E-5 88-89 3.606434048829084E-5 90-91 0.0 92-93 2.0511818414067907E-5 94-95 2.1042856618288787E-5 96-97 7.262278834106494E-6 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 960.0 20-21 3187.0 22-23 6549.0 24-25 13122.0 26-27 15360.0 28-29 26884.0 30-31 52336.0 32-33 66500.0 34-35 92405.0 36-37 122160.0 38-39 140733.0 40-41 152930.0 42-43 179018.0 44-45 216679.0 46-47 200192.0 48-49 182477.0 50-51 155797.0 52-53 147017.0 54-55 160976.0 56-57 179709.0 58-59 120727.0 60-61 193778.0 62-63 189348.0 64-65 200305.0 66-67 215661.0 68-69 221719.0 70-71 221431.0 72-73 214670.0 74-75 221009.0 76-77 201520.0 78-79 224952.0 80-81 239337.0 82-83 235477.0 84-85 242230.0 86-87 262949.0 88-89 288736.0 90-91 321263.0 92-93 354884.0 94-95 427333.0 96-97 969393.0 98-99 1389436.0 100-101 1.156955E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.68563081070984 #Duplication Level Percentage of deduplicated Percentage of total 1 88.91988463804469 73.52396752912273 2 7.390739122559823 12.222158530125023 3 1.9200829397857222 4.762898072551939 4 0.7664884797039233 2.5351033381384345 5 0.3635676366389904 1.5030909688926932 6 0.1930411813675333 0.9577039112291482 7 0.1257999322024326 0.7281292725071868 8 0.07161316010281892 0.4737103453959953 9 0.054388300862403455 0.40474178689774537 >10 0.1885641693762786 2.401968248213611 >50 0.0044853923439467785 0.24821193714868794 >100 0.0012869779155073988 0.1756480142716812 >500 2.3229072277086088E-5 0.018208288857137073 >1k 3.4840023600450165E-5 0.044459756647987646 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.3603174485515245E-5 0.0 0.0 0.0 3 0.0 4.3603174485515245E-5 0.0 0.0 0.0 4 0.0 9.689594330114499E-5 0.0 4.84479716505725E-6 0.0 5 0.0 1.0658553763125948E-4 0.0 4.84479716505725E-6 0.0 6 4.84479716505725E-6 1.0658553763125948E-4 0.0 4.84479716505725E-6 4.84479716505725E-6 7 4.84479716505725E-6 1.1143033479631674E-4 0.0 4.84479716505725E-6 4.84479716505725E-6 8 4.84479716505725E-6 1.2111992912643123E-4 0.0 4.84479716505725E-6 4.84479716505725E-6 9 4.84479716505725E-6 1.9379188660228997E-4 0.0 2.4223985825286247E-5 9.6895943301145E-6 10-11 1.2111992912643123E-5 1.986366837673472E-4 0.0 3.633597873792937E-5 9.6895943301145E-6 12-13 1.9379188660229E-5 1.986366837673472E-4 0.0 3.8758377320458E-5 9.6895943301145E-6 14-15 1.9379188660229E-5 3.052222213986067E-4 0.0 3.8758377320458E-5 2.664638440781487E-5 16-17 2.4223985825286247E-5 3.2460141005883573E-4 0.0 5.0870370233101114E-5 3.391358015540074E-5 18-19 2.9068782990343494E-5 3.5609259163170784E-4 0.0 6.298236314574424E-5 4.602557306804387E-5 20-21 2.9068782990343494E-5 3.9242857036963716E-4 0.0 1.1627513196137398E-4 4.844797165057249E-5 22-23 3.391358015540074E-5 4.311869476900952E-4 0.0 3.730493817094082E-4 6.055996456321561E-5 24-25 5.813756598068699E-5 4.675229264280245E-4 0.0 0.00135654320621603 7.267195747585874E-5 26-27 6.540476172827286E-5 4.8447971650572493E-4 0.0 0.003728071418511553 7.7516754640916E-5 28-29 7.267195747585874E-5 4.893245136707822E-4 0.0 0.013492760104684438 7.7516754640916E-5 30-31 7.267195747585874E-5 5.644188697291696E-4 0.0 0.016351190432068216 7.993915322344461E-5 32-33 7.267195747585874E-5 5.668412683116982E-4 0.0 0.02274147789277873 8.236155180597324E-5 34-35 7.509435605838736E-5 6.298236314574424E-4 0.0 0.03033085265184091 8.720634897103049E-5 36-37 9.931834188367362E-5 6.928059946031866E-4 0.0 0.0435401921223695 8.962874755355911E-5 38-39 1.0174074046620224E-4 7.29141973341116E-4 0.0 0.07884665146272421 9.931834188367362E-5 40-41 1.0174074046620224E-4 7.897019379043316E-4 0.0 0.11624121838121858 1.0416313904873086E-4 42-43 1.1143033479631674E-4 8.018139308169747E-4 0.0 0.1385151733475693 1.090079362137881E-4 44-45 1.1143033479631674E-4 9.083994684482343E-4 0.0 0.16920938578678948 1.1143033479631674E-4 46-47 1.1143033479631674E-4 0.001000450614584322 0.0 0.2038206167339585 1.1385273337884536E-4 48-49 1.1627513196137398E-4 0.0010052954117493792 0.0 0.23426532211917822 1.3080952345654573E-4 50-51 1.2354232770895985E-4 0.0011070361522155815 0.0 0.26395666154523156 1.3080952345654573E-4 52-53 1.3080952345654573E-4 0.0011215705437107532 0.0 0.33774292236905346 1.5261111069930335E-4 54-55 1.4049911778666024E-4 0.0011288377394583391 0.0 0.42899709937148933 1.7925749510711822E-4 56-57 1.5261111069930335E-4 0.001148216928118568 0.0 0.5185555973661551 1.865246908547041E-4 58-59 1.5987830644688923E-4 0.0011579065224486826 0.0 0.7349242387576118 1.9136948801976137E-4 60-61 1.6472310361194647E-4 0.0011966648997691405 0.0 0.9177135909980567 1.9379188660228997E-4 62-63 1.695679007770037E-4 0.001225733682759484 0.0 0.9268799472343452 1.986366837673472E-4 64-65 1.7199029935953235E-4 0.001400146380701545 0.0 0.9344596323990773 2.0105908234987585E-4 66-67 1.7925749510711822E-4 0.0014171031707792454 0.0 0.9414773210926626 2.0832627809746172E-4 68-69 1.8410229227217546E-4 0.0014534391495171746 0.0 0.9484223378287722 2.1317107526251896E-4 70-71 1.8410229227217546E-4 0.0014800855339249896 0.0 0.9537152787315972 2.180158724275762E-4 72-73 1.8410229227217546E-4 0.0014994647225852185 0.0 0.9578309339233133 2.4223985825286247E-4 74-75 1.8410229227217546E-4 0.001543067897070734 0.0 0.9612004903516107 2.4223985825286247E-4 76-77 1.8410229227217546E-4 0.001613317455964064 0.0 0.9642066869925288 2.4223985825286247E-4 78-79 1.865246908547041E-4 0.001652075833284522 0.0 0.9662463465990179 2.4223985825286247E-4 80-81 1.8894708943723273E-4 0.0016544982318670506 0.0 0.9668810150276403 2.470846554179197E-4 82-83 1.8894708943723273E-4 0.0016617654276146366 0.0 0.9674696578831947 2.567742497480342E-4 84-85 1.8894708943723273E-4 0.001671455021944751 0.0 0.9677361217272729 2.567742497480342E-4 86-87 1.9379188660228997E-4 0.001710213399265209 0.0 0.9678863104393897 2.591966483305628E-4 88 1.9379188660228997E-4 0.0017925749510711822 0.0 0.9678984224323023 2.664638440781487E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26940 0.0 51.609837 1 GTATCAA 48705 0.0 35.231358 1 TCAACGC 61355 0.0 27.451738 4 ATCAACG 62055 0.0 27.148926 3 CAACGCA 62910 0.0 26.793465 5 TATCAAC 63645 0.0 26.574224 2 AACGCAG 63915 0.0 26.398327 6 ACGCAGA 74410 0.0 22.652943 7 CGCAGAG 79410 0.0 21.242422 8 GTACATG 66025 0.0 20.780056 1 GACCGAG 19180 0.0 20.28762 90-91 TACATGG 66080 0.0 20.25743 2 ACCGAGG 19900 0.0 20.197529 90-91 CGAGACC 19655 0.0 19.950922 86-87 GTGGTAT 13005 0.0 19.899254 1 AGACCGA 19925 0.0 19.796555 88-89 ACATGGG 66700 0.0 19.63768 3 GAGACCG 19715 0.0 19.486956 88-89 TGGTATC 12125 0.0 19.312412 2 GCAGAGT 87065 0.0 19.149652 9 >>END_MODULE