##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139192_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13763308 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.867243834113136 31.0 31.0 34.0 30.0 34.0 2 32.009523800528186 33.0 31.0 34.0 30.0 34.0 3 32.06855394066601 33.0 31.0 34.0 30.0 34.0 4 35.76751759097449 37.0 35.0 37.0 35.0 37.0 5 35.62529139070345 37.0 35.0 37.0 33.0 37.0 6 35.628292122794896 37.0 35.0 37.0 33.0 37.0 7 35.5041654956788 37.0 35.0 37.0 33.0 37.0 8 35.4998033902896 37.0 35.0 37.0 33.0 37.0 9 37.107912283878264 39.0 37.0 39.0 33.0 39.0 10-11 36.97954568770822 39.0 37.0 39.0 33.0 39.0 12-13 36.93179201540792 39.0 37.0 39.0 33.0 39.0 14-15 38.08810781535951 40.0 37.0 41.0 33.0 41.0 16-17 38.08425779616354 40.0 37.0 41.0 33.0 41.0 18-19 38.11265162415896 40.0 37.0 41.0 33.0 41.0 20-21 38.0952955367669 40.0 37.0 41.0 33.0 41.0 22-23 37.99993995298566 40.0 37.0 41.0 33.0 41.0 24-25 37.89802590309252 40.0 37.0 41.0 32.5 41.0 26-27 37.7241141567807 40.0 37.0 41.0 32.0 41.0 28-29 37.58769017657771 39.5 37.0 41.0 32.0 41.0 30-31 37.444333358878986 39.0 36.0 41.0 32.0 41.0 32-33 37.59196662610884 39.5 37.0 41.0 32.0 41.0 34-35 37.54850911532675 40.0 36.0 41.0 32.0 41.0 36-37 37.41052932251007 39.5 36.0 41.0 31.5 41.0 38-39 37.24404078061314 39.0 36.0 41.0 31.0 41.0 40-41 37.17403864801871 39.0 36.0 40.5 31.0 41.0 42-43 37.05701051030675 39.0 35.5 40.0 31.0 41.0 44-45 37.11922028766428 39.0 35.5 40.5 31.0 41.0 46-47 37.268366242059244 39.0 36.0 41.0 31.0 41.0 48-49 37.1815468257503 39.0 36.0 41.0 31.0 41.0 50-51 37.02642902585773 39.0 35.0 41.0 31.0 41.0 52-53 36.87014982419845 39.0 35.0 40.0 30.5 41.0 54-55 36.726755730756466 39.0 35.0 40.0 30.0 41.0 56-57 36.56533846258087 38.0 35.0 40.0 30.0 41.0 58-59 36.409094071598034 38.0 35.0 40.0 30.0 41.0 60-61 36.150566751530754 38.0 34.0 40.0 29.5 41.0 62-63 35.87355597293944 37.5 34.0 40.0 29.0 41.0 64-65 35.62951137093425 37.0 34.0 40.0 29.0 41.0 66-67 35.349096849355234 36.5 34.0 39.0 29.0 41.0 68-69 35.0539470186645 36.0 34.0 39.0 28.5 40.5 70-71 34.74252712003114 35.5 33.0 39.0 28.0 40.0 72-73 34.42470413205619 35.0 33.0 38.0 28.0 40.0 74-75 34.09982115843649 35.0 33.0 37.0 28.0 39.5 76-77 33.00326016612449 34.0 31.5 36.0 26.0 39.0 78-79 33.41013485117996 35.0 32.0 36.0 27.0 39.0 80-81 33.31290670642433 35.0 32.0 36.0 27.0 38.0 82-83 33.09608008552714 35.0 32.0 35.5 27.0 37.0 84-85 32.90794574322605 34.0 32.0 35.0 27.0 37.0 86-87 32.71768867523506 34.0 32.0 35.0 27.0 36.0 88-89 32.507652525149496 34.0 32.0 35.0 26.5 36.0 90-91 32.38482379488084 34.0 31.0 35.0 26.0 36.0 92-93 32.31455818937165 34.0 31.0 35.0 26.5 35.0 94-95 32.292285823767244 34.0 31.0 35.0 27.0 35.0 96-97 32.211430151644635 34.0 31.0 35.0 26.5 35.0 98-99 32.379052901667094 34.0 31.0 35.0 27.0 35.0 100-101 31.616027142109417 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 1.0 17 1.0 18 5.0 19 23.0 20 153.0 21 801.0 22 3722.0 23 12329.0 24 31614.0 25 66190.0 26 115014.0 27 177341.0 28 248689.0 29 325211.0 30 404462.0 31 495647.0 32 604394.0 33 752468.0 34 978403.0 35 1316829.0 36 1902400.0 37 2691919.0 38 2504153.0 39 1092546.0 40 38991.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.83596152901613 21.591429909146843 15.109928514278689 24.462680047558333 2 14.481213731608545 22.26523658444166 40.16772694889756 23.085822735052236 3 17.3678958575947 26.82413268670584 31.214392644559 24.593578811140464 4 12.44366543275788 18.83262366867035 38.20825632907437 30.51545456949739 5 13.07378284348501 37.9707916149228 35.775243858525876 13.180181683066309 6 30.148304462851517 38.40499682198495 18.28582198407534 13.160876731088194 7 26.19886149463487 32.62309468043584 23.53005541981622 17.647988405113075 8 24.696105035213918 36.912448664231015 20.73500789199806 17.656438408557012 9 25.548414668915353 16.04133977093298 21.0692153368943 37.34103022325738 10-11 24.47915137843315 26.675618245264875 28.825097861647798 20.02013251465418 12-13 25.097752662368666 24.35701504318584 28.858814319929483 21.686417974516008 14-15 22.206688973319498 25.563785246976963 26.363680155962506 25.865845623741034 16-17 21.9328739863992 28.672979635419043 26.943500792106086 22.450645586075673 18-19 22.06095227355837 27.815501711690654 28.527017480482325 21.596528534268653 20-21 22.93343931415806 26.889903371820772 28.424559290429364 21.752098023591802 22-23 22.67806002789536 26.89949984929528 28.222623657351804 22.199816465457552 24-25 22.466336563091026 27.068554993751633 28.365797564994526 22.09931087816282 26-27 22.35193339696256 27.07273606349879 28.330631000356572 22.24469953918207 28-29 22.450112870070473 27.09112796044187 28.277673984884515 22.181085184603145 30-31 22.7047031010094 26.833197699781298 28.171931836031245 22.29016736317806 32-33 22.566367057734478 27.017756657568277 28.0848280348786 22.33104824981865 34-35 22.668861771417863 27.10411322593626 28.076638136145938 22.150386866499943 36-37 22.78192293701598 26.99035026585325 27.89069482287322 22.33703197425755 38-39 22.43773577960436 27.243125697742133 28.00866333850673 22.31047518414678 40-41 22.60372931391804 26.99151663813951 28.019802924259235 22.38495112368321 42-43 22.4643304821082 27.232201415984758 27.698273947097558 22.605194154809485 44-45 22.469795390349574 27.23954000437226 27.596640711869952 22.694023893408215 46-47 22.670466544876685 27.17779606294457 27.41503263825336 22.73670475392538 48-49 22.71754162498711 27.443657352585028 27.17688226073964 22.66191876168823 50-51 22.668337788085775 27.39843242996925 27.18934190657119 22.743887875373783 52-53 22.907781159371492 27.29597304813891 27.109793054951275 22.68645273753832 54-55 22.864824342911767 27.2352359122564 27.085076461682313 22.81486328314952 56-57 22.871607009264306 27.457322976991165 26.9139993906606 22.75707062308393 58-59 22.734901113473644 27.4522937269049 27.12562013736867 22.68718502225278 60-61 22.889349382750325 27.447601398771827 26.95985683083005 22.7031923876478 62-63 22.86114830918285 27.46391217392618 27.055819902861238 22.619119614029728 64-65 22.89901727331157 27.343475734380213 26.98228567275189 22.775221319556326 66-67 22.950851007813185 27.39403551583532 26.81264233482667 22.84247114152483 68-69 22.877870599433827 27.303345179054162 26.907051131058868 22.911733090453144 70-71 22.900122386102517 27.145851075034294 26.94121844834386 23.012808090519325 72-73 22.8774340756856 27.226021836241394 26.805747528853097 23.09079655921991 74-75 22.71520107125759 27.249979349681574 26.892207779231526 23.14261179982931 76-77 22.854369699185238 27.247228295603005 26.86335406573478 23.035047939476982 78-79 22.702578562113988 27.25770511923496 26.90006764279953 23.13964867585152 80-81 22.842601433446003 27.163669538658556 26.949686781943 23.044042245952436 82-83 22.918288529645956 27.059380687517464 27.13684141525961 22.88548936757697 84-85 22.850776654130563 27.09289254876684 27.048290122498216 23.008040674604384 86-87 22.72070266862853 27.231280544190916 27.00453598219248 23.04348080498807 88-89 22.87049851344671 27.01900827031109 26.909793863936653 23.20069935230555 90-91 22.858932784159126 27.07262328288086 26.998491159892595 23.069952773067413 92-93 22.884110528331572 26.987767471105116 27.132405507583336 22.995716492979973 94-95 22.528144687339 27.12914162727731 27.249431502300492 23.093282183083193 96-97 22.473438323509427 27.110982818119577 27.313836281179366 23.10174257719163 98-99 22.73881934138948 27.812715265459843 27.305937137742113 22.142528255408564 100-101 23.11879899420733 30.570387146963874 24.55804275549526 21.752771103333536 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3679.0 1 3144.0 2 3856.5 3 5326.0 4 6836.0 5 10514.0 6 13930.0 7 17137.0 8 19713.0 9 20022.5 10 18671.0 11 17230.5 12 18860.5 13 24553.0 14 37958.5 15 56778.0 16 71756.5 17 79049.5 18 79903.5 19 76895.0 20 72064.5 21 67381.0 22 66094.5 23 71563.0 24 84046.0 25 104615.5 26 130717.5 27 157800.5 28 189328.0 29 224352.5 30 256461.0 31 285851.0 32 312561.0 33 337088.5 34 359572.5 35 378688.0 36 399533.0 37 416304.5 38 427455.0 39 439397.5 40 450785.0 41 461275.5 42 469433.5 43 478794.5 44 491580.5 45 512711.0 46 537427.5 47 561244.5 48 577996.5 49 581481.0 50 576382.5 51 572555.0 52 554283.5 53 522291.0 54 500926.0 55 478727.5 56 453015.5 57 421392.0 58 381590.5 59 332751.5 60 283359.5 61 241973.5 62 199825.5 63 162302.5 64 131535.0 65 104429.0 66 83038.0 67 60377.0 68 40890.5 69 30834.5 70 22534.0 71 15273.5 72 10667.0 73 7840.5 74 6106.0 75 4529.0 76 2973.5 77 1698.5 78 1248.5 79 1037.0 80 711.5 81 468.5 82 368.0 83 243.5 84 142.0 85 89.5 86 63.0 87 51.5 88 36.0 89 25.5 90 19.5 91 15.0 92 11.5 93 5.5 94 2.5 95 3.0 96 3.0 97 3.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0033640168482751386 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 1.089854270499505E-4 20-21 0.0017765690165273598 22-23 3.6336146417228707E-4 24-25 2.5443463207189246E-5 26-27 3.0911417695804737E-4 28-29 0.0034828264086167672 30-31 3.7901932685147115E-4 32-33 6.576616707763215E-5 34-35 0.0023681290303329103 36-37 0.05557585953805587 38-39 0.03225743989139896 40-41 0.041409695318233825 42-43 8.478427489096741E-4 44-45 0.002320758323380704 46-47 0.0014502260679328206 48-49 5.755128908665793E-4 50-51 7.856705631474466E-6 52-53 9.676332622347609E-4 54-55 0.002270177736098685 56-57 0.0012097627938383341 58-59 0.003726658020220086 60-61 0.001398537105361689 62-63 8.78886067990124E-5 64-65 7.535054619198023E-4 66-67 3.9429406768717683E-4 68-69 1.9972707729077515E-4 70-71 0.001126712311132098 72-73 0.0016817827110863698 74-75 6.284348599236783E-4 76-77 0.001003732463957411 78-79 1.7666129492357262E-4 80-81 0.0018888113426898752 82-83 0.0024472806561130645 84-85 0.003568846833918496 86-87 0.003689266930759997 88-89 0.06404098299625523 90-91 6.858785901038446E-4 92-93 5.278372386427108E-5 94-95 5.41968055102109E-5 96-97 0.007700356710178457 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 497.0 20-21 1714.0 22-23 3295.0 24-25 6862.0 26-27 8877.0 28-29 14823.0 30-31 32800.0 32-33 41739.0 34-35 58475.0 36-37 90013.0 38-39 101703.0 40-41 105219.0 42-43 120804.0 44-45 141999.0 46-47 143136.0 48-49 132525.0 50-51 121415.0 52-53 117991.0 54-55 128076.0 56-57 134664.0 58-59 137691.0 60-61 138987.0 62-63 133997.0 64-65 141547.0 66-67 150786.0 68-69 154282.0 70-71 154184.0 72-73 148727.0 74-75 150497.0 76-77 150228.0 78-79 164560.0 80-81 170248.0 82-83 164134.0 84-85 169116.0 86-87 181365.0 88-89 197389.0 90-91 219538.0 92-93 235557.0 94-95 306833.0 96-97 385693.0 98-99 1202085.0 100-101 7399237.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.86888285721083 #Duplication Level Percentage of deduplicated Percentage of total 1 89.58443309078162 75.13346324720405 2 7.0262790155543655 11.785723433552155 3 1.7794451748014986 4.477202367487678 4 0.7171846042735572 2.405978862512563 5 0.3381011734946486 1.41780838568541 6 0.1820468214733026 0.9160838126803192 7 0.1042686728873057 0.6121427978443593 8 0.06811746296661629 0.4570348417662032 9 0.0416590630727963 0.31445091727141594 >10 0.15263909283765267 2.036519123240997 >50 0.0044305944593375605 0.2519376836764252 >100 0.001378965912012496 0.18289549114028988 >500 1.6267485262998857E-5 0.008759035938102747 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1797085409990097E-5 0.0 7.2656951366633664E-6 0.0 3 0.0 2.1797085409990097E-5 0.0 1.4531390273326733E-5 0.0 4 0.0 8.718834163996039E-5 0.0 2.9062780546653466E-5 0.0 5 0.0 9.445403677662375E-5 0.0 3.632847568331683E-5 0.0 6 0.0 9.445403677662375E-5 0.0 4.3594170819980194E-5 0.0 7 7.2656951366633664E-6 9.445403677662375E-5 0.0 4.3594170819980194E-5 0.0 8 7.2656951366633664E-6 1.089854270499505E-4 0.0 5.0859865956643566E-5 7.2656951366633664E-6 9 1.4531390273326733E-5 2.542993297832178E-4 0.0 7.992264650329702E-5 7.2656951366633664E-6 10-11 1.4531390273326733E-5 2.542993297832178E-4 0.0 1.089854270499505E-4 7.2656951366633664E-6 12-13 1.4531390273326733E-5 2.5793217735154946E-4 0.0 1.5621244543826237E-4 7.2656951366633664E-6 14-15 1.8164237841658414E-5 3.3422197628651484E-4 0.0 1.6711098814325742E-4 7.2656951366633664E-6 16-17 2.1797085409990097E-5 3.378548238548465E-4 0.0 1.707438357115891E-4 7.2656951366633664E-6 18-19 2.542993297832178E-5 3.814489946748267E-4 0.0 2.2886939680489605E-4 1.089854270499505E-5 20-21 2.9062780546653466E-5 4.286760130631386E-4 0.0 2.906278054665346E-4 1.4531390273326733E-5 22-23 2.9062780546653466E-5 4.650044887464554E-4 0.0 3.196905860131881E-4 1.4531390273326733E-5 24-25 2.9062780546653466E-5 5.485599828180842E-4 0.0 3.4875336655984155E-4 1.4531390273326733E-5 26-27 3.2695628114985145E-5 5.812556109330692E-4 0.0 3.9234753737982177E-4 1.4531390273326733E-5 28-29 3.632847568331683E-5 5.812556109330692E-4 0.0 7.846950747596435E-4 1.8164237841658414E-5 30-31 4.3594170819980194E-5 6.829753428463565E-4 0.0 0.0016420471008859207 2.1797085409990097E-5 32-33 4.3594170819980194E-5 6.902410379830198E-4 0.0 0.0034657365801884256 2.1797085409990097E-5 34-35 4.3594170819980194E-5 8.210235504429604E-4 0.0 0.006175840866163861 2.1797085409990097E-5 36-37 4.3594170819980194E-5 9.372746726295742E-4 0.0 0.009805055586927212 2.1797085409990097E-5 38-39 4.3594170819980194E-5 9.663374531762277E-4 0.0 0.015817418312516148 2.1797085409990097E-5 40-41 4.3594170819980194E-5 0.0010535257948161882 0.0 0.022894205375626267 2.1797085409990097E-5 42-43 5.812556109330693E-5 0.00107895572779451 0.0 0.029262587162911705 2.1797085409990097E-5 44-45 6.902410379830198E-5 0.0011915740024127921 0.0 0.03694605976993322 2.9062780546653466E-5 46-47 7.265695136663366E-5 0.001282395191621084 0.0 0.045755715123137544 2.9062780546653466E-5 48-49 7.265695136663366E-5 0.0013005594294627425 0.0 0.054398259488198625 2.9062780546653466E-5 50-51 7.265695136663366E-5 0.001387747771102703 0.0 0.0627901373710448 2.9062780546653466E-5 52-53 7.992264650329702E-5 0.0013950134662393662 0.0 0.07110572545495603 2.9062780546653466E-5 54-55 7.992264650329702E-5 0.0014059120089443614 0.0 0.08019874291849023 2.9062780546653466E-5 56-57 7.992264650329702E-5 0.0014531390273326732 0.0 0.08926996329661444 3.632847568331683E-5 58-59 7.992264650329702E-5 0.0014640375700376682 0.0 0.09857731876668022 4.3594170819980194E-5 60-61 7.992264650329702E-5 0.0014967331981526534 0.0 0.10698736088736807 4.3594170819980194E-5 62-63 8.718834163996039E-5 0.0015185302835626436 0.0 0.11481614739712284 4.3594170819980194E-5 64-65 8.718834163996039E-5 0.0016929069668425642 0.0 0.12308450846264575 4.3594170819980194E-5 66-67 9.445403677662377E-5 0.0017219697473892178 0.0 0.13168345865688685 5.0859865956643566E-5 68-69 1.0535257948161882E-4 0.0017873610036191882 0.0 0.1412741762372825 5.0859865956643566E-5 70-71 1.089854270499505E-4 0.0018055252414608464 0.0 0.15044348349975167 5.0859865956643566E-5 72-73 1.089854270499505E-4 0.00181279093659751 0.0 0.1581451203446148 5.0859865956643566E-5 74-75 1.1625112218661386E-4 0.0018563851074174902 0.0 0.16556339507914813 5.8125561093306925E-5 76-77 1.1625112218661386E-4 0.0019508391441941137 0.0 0.17259658797143826 6.539125622997029E-5 78-79 1.1625112218661386E-4 0.0019980661625824256 0.0 0.17883055439869544 6.539125622997029E-5 80-81 1.1625112218661386E-4 0.0019980661625824256 0.0 0.18318997148069344 6.902410379830198E-5 82-83 1.1625112218661386E-4 0.0020053318577190893 0.0 0.18687367891498177 7.265695136663366E-5 84-85 1.1625112218661386E-4 0.002019863247992416 0.0 0.1901105460983653 7.265695136663366E-5 86-87 1.2351681732327723E-4 0.0020343946382657425 0.0 0.19065547323361504 7.265695136663366E-5 88-89 1.2351681732327723E-4 0.0020997858944957126 0.0 0.19078262289850667 7.265695136663366E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15735 0.0 51.645893 1 GTATCAA 28640 0.0 34.770496 1 TCAACGC 36920 0.0 26.553995 4 ATCAACG 37320 0.0 26.291698 3 CAACGCA 37940 0.0 25.840103 5 TATCAAC 38645 0.0 25.58545 2 AACGCAG 38805 0.0 25.285559 6 ACGCAGA 45015 0.0 21.797316 7 GTACATG 42060 0.0 21.370079 1 TACATGG 42775 0.0 20.75982 2 ACATGGG 43145 0.0 20.339523 3 CGCAGAG 49700 0.0 19.742577 8 ATACAAC 12610 0.0 19.444683 6 AGAGTAC 48145 0.0 18.421755 10-11 GTGGTAT 7870 0.0 18.408875 1 TATACAA 15405 0.0 18.375868 5 TGGTATC 7075 0.0 18.35908 2 TATATAC 17485 0.0 18.237436 3 GCAGAGT 53260 0.0 18.196276 9 CATGGGG 33265 0.0 17.858177 4 >>END_MODULE