##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139191_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21517715 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.571290910768173 31.0 31.0 34.0 30.0 34.0 2 31.692326531883147 31.0 31.0 34.0 30.0 34.0 3 31.7531442348781 31.0 31.0 34.0 30.0 34.0 4 35.532157898735996 37.0 35.0 37.0 33.0 37.0 5 35.37407020215669 37.0 35.0 37.0 33.0 37.0 6 35.39961348126416 37.0 35.0 37.0 33.0 37.0 7 35.29724461914288 37.0 35.0 37.0 32.0 37.0 8 35.280162972694825 37.0 35.0 37.0 32.0 37.0 9 36.86529536244903 39.0 37.0 39.0 33.0 39.0 10-11 36.735989973842486 39.0 35.0 39.0 32.0 39.0 12-13 36.697328410567756 39.0 35.0 39.0 32.0 39.0 14-15 37.81379879322688 40.0 37.0 41.0 32.0 41.0 16-17 37.77284846462554 40.0 37.0 41.0 32.0 41.0 18-19 37.80896096541849 40.0 37.0 41.0 32.0 41.0 20-21 37.791010032547646 40.0 37.0 41.0 32.0 41.0 22-23 37.69531239926298 40.0 37.0 41.0 32.0 41.0 24-25 37.62610184908539 39.0 36.0 41.0 32.0 41.0 26-27 37.42781267324359 39.0 36.0 41.0 31.5 41.0 28-29 37.27407258373597 39.0 36.0 41.0 31.0 41.0 30-31 37.114475182723325 39.0 36.0 41.0 31.0 41.0 32-33 36.88963578885114 39.0 35.5 40.0 30.0 41.0 34-35 36.76201755529742 39.0 35.0 40.0 30.0 41.0 36-37 36.61175412472257 38.0 35.0 40.0 30.0 41.0 38-39 36.48098861598037 38.0 35.0 40.0 30.0 41.0 40-41 36.35284392656759 38.0 35.0 40.0 30.0 41.0 42-43 36.11519166434017 38.0 35.0 40.0 29.5 41.0 44-45 35.95044119508228 38.0 34.0 40.0 29.0 41.0 46-47 35.960095754983605 38.0 34.0 40.0 29.0 41.0 48-49 36.240424573966564 38.0 34.5 40.0 29.5 41.0 50-51 36.53062632503516 39.0 35.0 40.0 30.0 41.0 52-53 36.50955658367862 39.0 35.0 40.0 30.0 41.0 54-55 36.41724146800256 38.0 35.0 40.0 29.5 41.0 56-57 36.28239672253972 38.0 34.5 40.0 29.0 41.0 58-59 36.1211955715955 38.0 34.0 40.0 29.0 41.0 60-61 35.93175756591613 38.0 34.0 40.0 28.5 41.0 62-63 35.73102186795295 37.5 34.0 40.0 28.0 41.0 64-65 35.48501954798328 37.0 34.0 40.0 28.0 41.0 66-67 35.23522404325162 36.5 33.5 39.5 28.0 41.0 68-69 34.966150240079585 36.0 33.0 39.0 28.0 41.0 70-71 34.68709525971849 36.0 33.0 39.0 28.0 40.5 72-73 34.41923225679837 35.0 33.0 39.0 28.0 40.0 74-75 34.117283378472976 35.0 32.0 38.0 27.0 40.0 76-77 32.402926431661754 34.0 30.5 36.0 25.5 39.0 78-79 33.41116131347407 35.0 32.0 37.0 26.5 39.0 80-81 33.46914693211686 35.0 32.0 36.0 27.0 39.0 82-83 33.26855833572356 35.0 32.0 36.0 27.0 38.0 84-85 33.041033033160176 35.0 32.0 36.0 27.0 37.0 86-87 32.84425845428772 34.0 32.0 35.0 27.0 37.0 88-89 32.696714221625456 34.0 32.0 35.0 27.0 36.0 90-91 32.582117204782875 34.0 32.0 35.0 27.0 36.0 92-93 32.50629009208819 34.0 32.0 35.0 27.0 36.0 94-95 32.490146932979115 34.0 32.0 35.0 27.0 35.5 96-97 32.59089093933715 34.0 32.0 35.0 27.0 35.0 98-99 32.72072162285528 34.0 32.0 35.0 28.5 35.0 100 31.486750684642697 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 65.0 20 295.0 21 1911.0 22 8468.0 23 28270.0 24 70463.0 25 140969.0 26 239718.0 27 360264.0 28 488669.0 29 621092.0 30 753621.0 31 897651.0 32 1065626.0 33 1283580.0 34 1583892.0 35 2014572.0 36 2689036.0 37 3609453.0 38 3727555.0 39 1863730.0 40 68806.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.2337051122761 21.686800852228036 14.85117727416689 23.22831676132898 2 14.643279755516996 22.46361586474566 41.15270017287739 21.740404206859953 3 17.657655564264143 27.62071158577944 31.520977018238227 23.20065583171819 4 12.399996932759821 19.182366715053156 39.4690142517456 28.94862210044143 5 12.450852704387989 38.594209468802795 36.418086214079885 12.536851612729324 6 28.688524780628427 39.62007583054242 18.968566132602835 12.722833256226323 7 25.10584315564014 33.42736914858139 24.450995850483565 17.015791845294903 8 23.835834799373444 37.600107632246264 21.427651588470244 17.13640597991004 9 25.173114338581026 16.521912294126025 21.907753681094853 36.3972196861981 10-11 23.681227242431923 27.271326734689566 29.594162797430368 19.453283225448143 12-13 24.42813668695887 25.045435253732308 29.60297698999766 20.92345106931117 14-15 21.59969987226679 26.328326634523847 27.21536720916296 24.85660628404641 16-17 21.109725789510545 29.475999884188187 27.760100572241402 21.654173754059862 18-19 21.157456688553307 28.519797311003803 29.515982078935497 20.806763921507393 20-21 22.05111122993765 27.611879583415224 29.451177315774924 20.885831870872206 22-23 21.809544110366964 27.60243054550793 29.248409228553452 21.33961611557166 24-25 21.604086059367894 27.79176203288457 29.331911919793697 21.27223998795384 26-27 21.508898209087516 27.807894293600494 29.28496379972487 21.398243697587116 28-29 21.605798174795314 27.842324859418248 29.244863191162068 21.307013774624366 30-31 21.95527005421084 27.588819447962408 29.09825636883392 21.35765412899283 32-33 21.699855846282112 27.79492012965289 28.997608255007645 21.507615769057356 34-35 21.84999931707659 27.881531853863418 28.986285651981337 21.282183177078657 36-37 21.910736976233142 27.77868497453816 28.8493266002419 21.4612514489868 38-39 21.611615533534557 27.99774526220852 28.949274424454746 21.441364779802175 40-41 21.781735181552406 27.799801142485673 28.90960580836281 21.50885786759911 42-43 21.767540499616615 27.969148774039514 28.520553268435155 21.742757457908713 44-45 21.678047660217448 28.078079509953373 28.391995037599333 21.851877792229846 46-47 21.89010610873291 28.00417532969478 28.193296737313823 21.91242182425849 48-49 21.944259700147157 28.231844965409692 27.97727287681755 21.846622457625607 50-51 21.90083440740646 28.23135546586057 27.952558005723578 21.91525212100939 52-53 22.119583956125034 28.156389967853112 27.889577605220435 21.83444847080142 54-55 22.107399903143524 28.072900198552663 27.89124767121113 21.92845222709268 56-57 22.12933619198212 28.270292104386456 27.6585691731242 21.94180253050723 58-59 21.971205314816565 28.25669993683249 27.8963019245353 21.875792823815647 60-61 22.11097448842115 28.287834330489463 27.70953526259875 21.89165591849064 62-63 22.080797063101016 28.27934379114454 27.82511389187437 21.814745253880073 64-65 22.133223118752735 28.183480923584426 27.754627908848526 21.928668048814313 66-67 22.188458450376874 28.199322648731485 27.565675049319534 22.04654385157211 68-69 22.102112903948854 28.134807983615012 27.680371380102176 22.08270773233396 70-71 22.152455429198675 27.935175260092944 27.72679006663818 22.185579244070205 72-73 22.16142512165237 28.0345113504125 27.582575068817082 22.221488459118046 74-75 21.99622921667418 28.049705497283245 27.664814549327037 22.289250736715537 76-77 22.0942693636982 28.09631681054603 27.663729063504434 22.14568476225134 78-79 21.955432206046556 28.089339228938474 27.67580057890338 22.279427986111585 80-81 22.086882279712437 27.969817861605534 27.760925832044673 22.18237402663735 82-83 22.23800716476641 27.861705331570263 27.903024342849324 21.997263160813997 84-85 22.193158619942086 27.891780236111657 27.81316668137716 22.101894462569096 86-87 21.967939101578324 28.077268300596636 27.827419708135515 22.12737288968953 88-89 22.180381312375427 27.84244631671689 27.715531452021114 22.26164091888657 90-91 22.183927522181115 27.857496148209428 27.815224091598402 22.143352238011055 92-93 22.230705516723663 27.787348639993816 27.936846302986385 22.045099540296142 94-95 21.887249320111067 27.908816504290872 28.078147001206027 22.125787174392034 96-97 21.901194188151916 28.00940485283946 28.142407695583334 21.946993263425295 98-99 22.999099888812637 30.035603565424978 28.313103964594738 18.65219258116764 100 22.224469101552764 30.738635551330507 22.160039741056153 24.87685560606058 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5470.0 1 4792.0 2 6502.5 3 9351.0 4 12183.5 5 19764.5 6 26988.0 7 32951.5 8 37537.0 9 37459.5 10 33708.0 11 29645.0 12 31218.5 13 40389.0 14 63387.5 15 95973.0 16 123195.5 17 139097.5 18 144376.5 19 141789.0 20 134293.5 21 125510.5 22 121527.5 23 129468.5 24 151228.0 25 188369.5 26 239076.5 27 295828.0 28 361047.5 29 434965.0 30 503548.0 31 564791.5 32 622077.0 33 671289.0 34 713546.5 35 749129.5 36 784054.5 37 811095.0 38 814487.0 39 808023.0 40 802046.5 41 791378.5 42 778495.5 43 769982.5 44 767555.0 45 779855.0 46 798710.5 47 819947.5 48 826521.5 49 811522.5 50 797366.0 51 783549.5 52 750909.5 53 700556.0 54 657947.0 55 623182.0 56 587913.5 57 542349.5 58 491606.5 59 436176.5 60 373100.5 61 319345.0 62 267278.5 63 217832.5 64 179353.5 65 144853.0 66 116848.5 67 88226.5 68 61088.5 69 44996.5 70 33044.5 71 22645.0 72 16323.0 73 11964.5 74 9024.5 75 6666.5 76 4443.5 77 2677.5 78 2036.0 79 1676.0 80 1166.5 81 762.0 82 560.0 83 352.5 84 201.5 85 136.0 86 98.5 87 71.5 88 46.0 89 27.5 90 21.0 91 20.5 92 18.5 93 12.0 94 3.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.11092720579299428 3 0.0 4 0.0 5 0.0 6 0.0 7 1.2547800730700263E-4 8 0.0 9 0.0 10-11 4.8797002841612125E-5 12-13 3.485500202972295E-5 14-15 9.759400568322426E-4 16-17 2.230720129902269E-4 18-19 9.294667207926121E-5 20-21 8.482005066057622E-4 22-23 3.4166660507370725E-4 24-25 3.534222574735089E-4 26-27 0.0021661364789760983 28-29 0.003982360240115362 30-31 0.011238847129933952 32-33 0.008318074945082679 34-35 0.0074093462838614125 36-37 0.003959307958353186 38-39 6.953433073028073E-4 40-41 2.2094696862079929E-4 42-43 3.34577217075929E-4 44-45 2.2063389785866468E-5 46-47 0.0 48-49 3.5160143907455284E-5 50-51 0.0 52-53 0.0014001798333534684 54-55 6.736174313122669E-4 56-57 8.120996136056236E-4 58-59 6.360475327861964E-5 60-61 4.8270018622573185E-4 62-63 4.0697548382398615E-4 64-65 9.168603648566215E-4 66-67 8.590532915794512E-4 68-69 3.212113341504311E-4 70-71 3.1140974448516195E-4 72-73 0.0 74-75 0.0 76-77 2.7983521159322746E-4 78-79 1.1474422184333814E-4 80-81 2.943860217666571E-4 82-83 5.920518472890133E-5 84-85 1.582907987489835E-5 86-87 0.0 88-89 1.6390913585595613E-5 90-91 0.0 92-93 0.0 94-95 9.136276453605303E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 945.0 20-21 3228.0 22-23 6325.0 24-25 13342.0 26-27 17838.0 28-29 29768.0 30-31 70104.0 32-33 80999.0 34-35 108819.0 36-37 145886.0 38-39 176340.0 40-41 189348.0 42-43 218237.0 44-45 246586.0 46-47 245491.0 48-49 216702.0 50-51 200345.0 52-53 197581.0 54-55 208311.0 56-57 219998.0 58-59 221120.0 60-61 219532.0 62-63 211999.0 64-65 223645.0 66-67 239281.0 68-69 243883.0 70-71 241325.0 72-73 232065.0 74-75 238305.0 76-77 229560.0 78-79 251043.0 80-81 260559.0 82-83 251634.0 84-85 256955.0 86-87 274539.0 88-89 303165.0 90-91 333390.0 92-93 361062.0 94-95 426220.0 96-97 894813.0 98-99 1396261.0 100-101 1.1611166E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.91183097250865 #Duplication Level Percentage of deduplicated Percentage of total 1 88.91316894024209 73.71953634403458 2 7.428236303085218 12.317773455705085 3 1.946204227698213 4.84090067894688 4 0.7454995682502695 2.4724293677137807 5 0.35782596816493795 1.48340030950328 6 0.19241277701952045 0.9571977387116084 7 0.11462165844211161 0.6652444099378685 8 0.07815742458085158 0.5184140140875328 9 0.0489228350925266 0.36506536504987325 >10 0.16882092341309474 2.1787926304667034 >50 0.004680565422256387 0.26179000404453767 >100 0.00138238998382252 0.17677061537681865 >500 5.538073344703649E-5 0.030568213697992317 >1k 1.1037871610649158E-5 0.012116852723485947 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3236668019815302E-5 0.0 1.394200081188918E-5 0.0 3 0.0 2.3236668019815302E-5 0.0 1.394200081188918E-5 0.0 4 0.0 8.365200487133508E-5 0.0 2.788400162377836E-5 0.0 5 0.0 1.0224133928718732E-4 0.0 2.788400162377836E-5 0.0 6 0.0 1.0224133928718732E-4 0.0 2.788400162377836E-5 4.64733360396306E-6 7 0.0 1.0224133928718732E-4 0.0 2.788400162377836E-5 9.29466720792612E-6 8 0.0 1.0224133928718732E-4 0.0 2.788400162377836E-5 9.29466720792612E-6 9 0.0 2.091300121783377E-4 0.0 3.717866883170448E-5 9.29466720792612E-6 10-11 0.0 2.091300121783377E-4 0.0 3.717866883170448E-5 9.29466720792612E-6 12-13 0.0 2.091300121783377E-4 0.0 6.506267045548285E-5 1.394200081188918E-5 14-15 0.0 2.811636830397651E-4 0.0 7.900467126737201E-5 2.091300121783377E-5 16-17 0.0 2.9742935065363584E-4 0.0 8.829933847529815E-5 2.788400162377836E-5 18-19 0.0 3.090476846635435E-4 0.0 9.527033888124273E-5 4.182600243566754E-5 20-21 0.0 3.229896854754327E-4 0.0 1.0456500608916885E-4 4.64733360396306E-5 22-23 0.0 3.7411035511902634E-4 0.0 1.2780167410898416E-4 6.041533685151978E-5 24-25 0.0 4.1128902395073084E-4 0.0 1.92864344564467E-4 6.97100040594459E-5 26-27 0.0 4.3220202516856457E-4 0.0 3.044003510595804E-4 6.97100040594459E-5 28-29 4.64733360396306E-6 4.3684935877252764E-4 0.0 9.619980560203534E-4 6.97100040594459E-5 30-31 4.64733360396306E-6 5.112066964359366E-4 0.0 0.003050974511001749 6.97100040594459E-5 32-33 4.64733360396306E-6 5.135303632379181E-4 0.0 0.008030592467648168 8.132833806935355E-5 34-35 4.64733360396306E-6 5.855640340993455E-4 0.0 0.01403262381716646 9.294667207926121E-5 36-37 4.64733360396306E-6 6.552740381587914E-4 0.0 0.02024610884566507 9.294667207926121E-5 38-39 4.64733360396306E-6 6.715397057726622E-4 0.0 0.0331261939290487 9.294667207926121E-5 40-41 4.64733360396306E-6 7.598390442479603E-4 0.0 0.041458863080954464 9.527033888124273E-5 42-43 4.64733360396306E-6 7.830757122677756E-4 0.0 0.05368832145978325 9.99176724852058E-5 44-45 4.64733360396306E-6 8.783460511490183E-4 0.0 0.06318282401267979 1.0224133928718732E-4 46-47 4.64733360396306E-6 9.573507224163904E-4 0.0 0.07791487153724269 1.0921233969313191E-4 48-49 4.64733360396306E-6 9.666453896243165E-4 0.0 0.0909088162939234 1.2083067370303957E-4 50-51 4.64733360396306E-6 0.0010502973944956516 0.0 0.10382375637933675 1.2083067370303957E-4 52-53 4.64733360396306E-6 0.0010549447280996146 0.0 0.1144615029988082 1.3477267451492874E-4 54-55 4.64733360396306E-6 0.0010665630621095224 0.0 0.12712548706960752 1.4406734172285488E-4 56-57 4.64733360396306E-6 0.0010874760633273561 0.0 0.13875543941352508 1.4639100852483638E-4 58-59 4.64733360396306E-6 0.0010897997301293377 0.0 0.148326622970887 1.4871467532681792E-4 60-61 4.64733360396306E-6 0.001126978398961042 0.0 0.1568196251321295 1.603330093367256E-4 62-63 4.64733360396306E-6 0.0011432440665749128 0.0 0.16426465356567832 1.7195134334663324E-4 64-65 4.64733360396306E-6 0.0012524564062680447 0.0 0.17063614793671167 1.7195134334663324E-4 66-67 4.64733360396306E-6 0.0012640747402779524 0.0 0.17745146266692352 1.7195134334663324E-4 68-69 4.64733360396306E-6 0.0012942824087037123 0.0 0.18382295703795687 1.7195134334663324E-4 70-71 4.64733360396306E-6 0.001315195409921546 0.0 0.18934631302626698 1.8589334415852242E-4 72-73 4.64733360396306E-6 0.0013175190767235276 0.0 0.1938216952868834 1.998353449704116E-4 74-75 4.64733360396306E-6 0.0013639924127631584 0.0 0.1973699344935092 1.998353449704116E-4 76-77 4.64733360396306E-6 0.0014499680844364748 0.0 0.20069045435354077 1.998353449704116E-4 78-79 4.64733360396306E-6 0.0014801757528622346 0.0 0.20290490881582918 1.998353449704116E-4 80-81 4.64733360396306E-6 0.001482499419664216 0.0 0.20361362719043358 2.021590117723931E-4 82-83 4.64733360396306E-6 0.0014964414204761054 0.0 0.20422010422575074 2.091300121783377E-4 84-85 4.64733360396306E-6 0.0015080597544860131 0.0 0.20449429690838455 2.1145367898031924E-4 86-87 4.64733360396306E-6 0.0015266490889018652 0.0 0.20464533525051334 2.1377734578230078E-4 88 4.64733360396306E-6 0.0015986827597632928 0.0 0.20464533525051334 2.1842467938626382E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28345 0.0 50.62398 1 GTATCAA 51220 0.0 34.535732 1 TCAACGC 63770 0.0 27.082127 4 ATCAACG 64865 0.0 26.669228 3 CAACGCA 65390 0.0 26.42373 5 AACGCAG 66310 0.0 26.09431 6 TATCAAC 67195 0.0 25.946133 2 ACGCAGA 75895 0.0 22.750126 7 CGCAGAG 81820 0.0 21.132668 8 GTACATG 65585 0.0 20.300592 1 TACATGG 66640 0.0 19.510704 2 ACATGGG 65705 0.0 19.44021 3 GCAGAGT 88810 0.0 19.26653 9 GAGTACT 53975 0.0 18.518955 12-13 GTGGTAT 13330 0.0 18.36751 1 AGAGTAC 81450 0.0 18.193987 10-11 CAGAGTA 87785 0.0 17.857933 10-11 CATGGGG 47395 0.0 17.228235 4 TATATAC 28870 0.0 17.197243 3 TGGTATC 12990 0.0 16.950787 2 >>END_MODULE