##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139188_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25757582 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.269155777122247 31.0 30.0 31.0 26.0 31.0 2 29.569962040691554 31.0 30.0 31.0 26.0 31.0 3 28.95050517552463 31.0 28.0 31.0 25.0 33.0 4 32.582009600124735 35.0 32.0 35.0 26.0 37.0 5 32.21733177438783 35.0 32.0 35.0 25.0 37.0 6 31.60961498637566 35.0 30.0 35.0 23.0 37.0 7 32.05316923770251 35.0 31.0 35.0 25.0 37.0 8 31.620563568428125 35.0 30.0 35.0 23.0 37.0 9 32.82064644111392 35.0 30.0 37.0 25.0 39.0 10-11 32.841515306056294 35.0 30.5 37.0 25.0 39.0 12-13 32.82376637682839 35.0 30.5 37.0 24.0 39.0 14-15 33.58839653504743 36.0 31.5 38.0 25.0 40.0 16-17 33.54588483887967 36.0 31.0 38.0 25.0 40.0 18-19 33.68676623061901 36.0 31.5 38.5 25.0 40.0 20-21 33.77682953858802 36.0 31.5 39.0 25.0 40.0 22-23 33.705218608049016 36.0 31.5 39.0 25.0 40.0 24-25 33.590010213800156 36.0 31.0 38.5 25.0 40.0 26-27 33.17585264692188 36.0 31.0 38.0 24.0 40.0 28-29 32.938307034178344 36.0 30.0 38.0 23.0 40.0 30-31 32.769019992002725 35.0 30.0 38.0 23.0 40.0 32-33 32.51459258421144 35.0 30.0 38.0 21.0 40.0 34-35 32.40335962280497 35.0 30.0 38.0 21.0 40.0 36-37 32.290050496844245 35.0 30.0 38.0 21.0 40.0 38-39 32.05343963892092 35.0 30.0 38.0 19.0 40.0 40-41 31.933421535157553 35.0 30.0 38.0 19.0 40.0 42-43 31.888899852610237 34.0 30.0 38.0 19.0 40.0 44-45 31.778051139217794 34.0 29.0 38.0 19.0 40.0 46-47 31.77068620892103 34.0 29.0 38.0 19.0 40.0 48-49 31.88865591156619 34.0 29.0 38.0 20.5 40.0 50-51 31.75063889293277 34.0 29.0 38.0 19.5 40.0 52-53 31.647170158609832 34.0 28.5 38.0 19.5 40.0 54-55 31.917627597227543 34.0 29.0 38.0 21.0 40.0 56-57 31.879121621366437 34.0 28.5 38.0 21.0 40.0 58-59 31.811960494969064 34.0 28.0 38.0 21.5 40.0 60-61 31.672011608061148 34.0 28.0 38.0 21.0 40.0 62-63 31.546467312158157 34.0 28.0 37.0 21.5 39.5 64-65 31.233765795104176 33.5 28.0 37.0 20.0 39.0 66-67 31.07326105151187 33.0 28.0 37.0 20.0 39.0 68-69 30.94113460256183 33.0 28.0 36.5 20.0 39.0 70-71 30.77415151786841 32.5 28.0 36.0 20.0 39.0 72-73 30.551806301425387 32.0 28.0 36.0 20.0 39.0 74-75 30.281458429958377 32.0 27.5 35.5 20.0 38.0 76-77 28.845347800380864 30.5 26.0 34.0 19.5 36.0 78-79 29.990879060841237 31.5 27.5 35.0 20.5 37.0 80-81 30.255155770969132 32.0 28.0 35.0 21.0 37.0 82-83 30.19332442970046 32.0 28.0 34.5 21.0 36.0 84-85 30.14289320301046 32.0 28.0 34.0 21.0 36.0 86-87 30.028336538335132 32.0 28.0 34.0 21.0 36.0 88-89 29.865099898566292 32.0 27.5 34.0 20.5 35.0 90-91 29.842645282596813 32.0 28.0 34.0 21.0 35.0 92-93 29.899102809620874 32.0 28.5 34.0 21.5 35.0 94-95 30.088774783486443 32.0 29.0 34.0 23.0 35.0 96-97 30.40454601973215 32.0 29.0 34.0 24.0 35.0 98-99 30.791643417320294 32.0 29.0 34.0 25.0 35.0 100 29.96183794409614 31.0 27.0 34.0 23.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 10.0 18 139.0 19 1548.0 20 9333.0 21 42678.0 22 134177.0 23 321632.0 24 613349.0 25 979969.0 26 1355330.0 27 1687895.0 28 1944327.0 29 2107964.0 30 2206422.0 31 2260034.0 32 2274003.0 33 2249561.0 34 2162084.0 35 1987705.0 36 1670104.0 37 1149735.0 38 516126.0 39 83088.0 40 367.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.3231092111053 26.086027795621497 17.279222871153046 22.311640122120156 2 15.559382650059868 26.016696148559376 37.86212152417146 20.561799677209297 3 17.815261116600954 29.257157663708956 32.64790875643472 20.279672463255373 4 13.547888478359981 22.057505701612797 38.18008880122727 26.21451701879995 5 11.612922812899239 39.902640702168426 36.849954970538576 11.634481514393762 6 26.99157087027812 41.84442080005802 19.190528055001437 11.973480274662428 7 23.418366677431134 34.24897569966001 25.311669395054242 17.020988227854616 8 22.837574582893687 38.8831257530307 21.93330491969316 16.34599474438245 9 24.12023296369102 16.43372317552719 22.333953469726048 37.112090391055744 10-11 22.87804801508432 28.215008888646796 30.235713542891695 18.67122955337718 12-13 23.57638899673561 25.8346579067521 30.207743843160156 20.381209253352132 14-15 20.789531653873926 27.19480491446904 27.699613713620703 24.316049718036332 16-17 20.31831404154677 30.16040675141062 28.41317927339403 21.10809993364858 18-19 20.380854911103384 29.392909319480914 30.08201558037341 20.14422018904229 20-21 21.157438287854777 28.541275463535715 29.923276170461417 20.37801007814809 22-23 20.910612683599755 28.54008495965603 29.79593087062976 20.753371486114457 24-25 20.899181335666974 28.61969787662521 29.798654162370745 20.682466625337067 26-27 20.975324290875797 28.679640213555164 29.646575355614107 20.69846013995493 28-29 21.031511878285198 28.67308907379237 29.64308922436948 20.652309823552958 30-31 21.197772123710383 28.574386342441354 29.570221553720643 20.657619980127624 32-33 21.154926739474902 28.71452432534294 29.419662429244852 20.71088650593731 34-35 21.210399746213728 28.697765322308605 29.49513376532753 20.596701166150137 36-37 21.194600612200908 28.713976358850168 29.324862027762844 20.766561001186084 38-39 21.15585382339338 28.739529078270515 29.317479420224103 20.787137678112007 40-41 21.283150191833304 28.658320854627828 29.231709512884123 20.826819440654738 42-43 21.180109979226444 28.82379499269692 28.99861038334374 20.997484644732896 44-45 21.20593209017789 28.929873543823355 28.803668606109344 21.06052575988941 46-47 21.271156280385302 28.87604958949511 28.68947505813278 21.163319071986813 48-49 21.223355380586995 29.00577631984565 28.613607854758538 21.157260444808816 50-51 21.190778983984814 29.05564429554109 28.499471000681027 21.25410571979307 52-53 21.16025537935061 29.035658200748536 28.501106682250484 21.30297973765037 54-55 21.160783848346437 28.9494282411581 28.608290438383303 21.28149747211216 56-57 21.161349061970252 28.88786732204109 28.59910224356162 21.351681372427038 58-59 21.087086951640284 28.962777912600746 28.568895072755918 21.381240063003055 60-61 21.167231877226666 29.01248796286672 28.571774767125458 21.248505392781155 62-63 21.100808867299982 29.11611075922981 28.555197292906207 21.227883080564002 64-65 21.045625248092673 29.144707570809388 28.431027123632408 21.37864005746553 66-67 21.061999381726 29.225845125520916 28.25774835855317 21.45440713419991 68-69 21.054563946131 29.237381023086893 28.29151358251903 21.416541448263075 70-71 21.093478578637903 29.043561743400133 28.348483189533937 21.514476488428034 72-73 21.167421961832687 29.02079845620684 28.34202800258721 21.469751579373263 74-75 21.16920367590796 29.16624519786824 28.229175582352788 21.435375543871018 76-77 21.18246330205988 29.062864156541995 28.430084024006153 21.32458851739197 78-79 21.125011738245387 29.018908561735014 28.417497337065313 21.438582362954286 80-81 21.120380886567823 29.039552414185366 28.417092488134532 21.422974211112276 82-83 21.198800282714352 29.044003415248802 28.53811709204443 21.219079209992415 84-85 21.253387837505993 29.145165812339386 28.497425212722987 21.10402113743163 86-87 21.09127547570184 29.187661531459707 28.601665739902344 21.11939725293611 88-89 21.141635015843825 29.113309185567665 28.63998185926106 21.10507393932745 90-91 21.16642542584484 29.16858786482222 28.779785116447083 20.885201592885856 92-93 21.137759396232433 29.06765599173316 28.831949861201245 20.962634750833164 94-95 20.7537564220324 29.12124224870154 29.107189767834836 21.01781156143123 96-97 20.720824578155607 29.321111844530602 29.27296560196569 20.685097975348107 98-99 21.74046316236652 31.312716770987443 29.514153954413757 17.432666112232276 100 21.370158752596215 32.07881533550044 23.359817978967563 23.191207932935786 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6657.0 1 6316.0 2 9649.5 3 13742.5 4 16244.5 5 22850.5 6 30005.5 7 37222.0 8 43866.5 9 46387.0 10 45100.5 11 42474.0 12 44989.5 13 56279.0 14 84464.5 15 126321.0 16 160448.0 17 175880.0 18 181720.5 19 187533.0 20 191609.0 21 195397.5 22 203080.5 23 222508.0 24 258250.0 25 308892.0 26 370473.0 27 433982.5 28 497244.5 29 563385.5 30 626041.5 31 688322.0 32 752420.5 33 805193.5 34 855445.0 35 908468.5 36 960017.0 37 1005229.0 38 1035044.5 39 1053286.5 40 1069190.5 41 1078284.0 42 1078628.5 43 1078633.0 44 1074624.0 45 1069753.0 46 1060837.5 47 1044760.5 48 1021112.0 49 984066.5 50 946707.5 51 908261.0 52 859789.0 53 802068.0 54 737239.0 55 671092.0 56 607048.0 57 544558.0 58 480671.0 59 414975.0 60 348992.5 61 287365.5 62 234878.0 63 188886.5 64 147723.5 65 114744.5 66 88658.5 67 69427.5 68 55188.0 69 42900.5 70 33260.5 71 25760.5 72 19680.5 73 14832.5 74 11121.0 75 8482.5 76 6516.5 77 4933.5 78 3732.5 79 2830.5 80 2125.0 81 1595.5 82 1249.0 83 879.5 84 602.5 85 448.0 86 349.5 87 280.0 88 198.0 89 129.5 90 85.5 91 61.0 92 45.0 93 21.0 94 5.5 95 3.5 96 3.0 97 2.5 98 1.5 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0349761091704959 3 1.8305406151866273 4 0.8186443898344186 5 3.882352000277045E-6 6 0.0 7 0.0 8 0.0 9 0.05768398602011633 10-11 0.2861099306604168 12-13 0.0033465874242388123 14-15 3.105881600221636E-5 16-17 1.222940880087269E-4 18-19 0.12203591160070848 20-21 0.0 22-23 0.0013081071192398532 24-25 1.1483674827329324E-4 26-27 0.0030432709825633448 28-29 6.257710917613129E-4 30-31 8.120074642707398E-4 32-33 0.0026638514763998116 34-35 1.2461431621879656E-4 36-37 0.0 38-39 0.0 40-41 1.8156954525140766E-5 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0063963379766433315 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 4.604166987519554E-6 66-67 0.0 68-69 8.5649171950943E-5 70-71 2.422897936151309E-6 72-73 0.0 74-75 0.0 76-77 2.311187356326001E-5 78-79 0.0 80-81 8.008009076811355E-6 82-83 2.7308007977761448E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.06798551591766E-6 92-93 1.0543122569390919E-4 94-95 8.386529650005294E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 6723.0 20-21 19441.0 22-23 31386.0 24-25 54789.0 26-27 60232.0 28-29 70440.0 30-31 93098.0 32-33 108640.0 34-35 148555.0 36-37 157014.0 38-39 173622.0 40-41 201553.0 42-43 229772.0 44-45 260822.0 46-47 268223.0 48-49 244894.0 50-51 223777.0 52-53 210840.0 54-55 223781.0 56-57 263251.0 58-59 286862.0 60-61 297159.0 62-63 321073.0 64-65 336583.0 66-67 356632.0 68-69 374759.0 70-71 390174.0 72-73 389043.0 74-75 404422.0 76-77 332261.0 78-79 383591.0 80-81 418163.0 82-83 431008.0 84-85 455996.0 86-87 505077.0 88-89 572880.0 90-91 628782.0 92-93 711453.0 94-95 862479.0 96-97 1367511.0 98-99 1675083.0 100-101 1.1205738E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.44344518210697 #Duplication Level Percentage of deduplicated Percentage of total 1 93.17696185134452 82.40891517734661 2 4.407499566320235 7.79628892568008 3 1.2076889994212272 3.204365274520348 4 0.5094878439678516 1.8024344079568222 5 0.24872795822075505 1.0999178769077371 6 0.15311383279065063 0.8125148926225323 7 0.09060570976222705 0.5609436787178996 8 0.05359068880991644 0.3791796118424958 9 0.031854152369373986 0.25355618810128905 >10 0.11874511403933283 1.5490240445194878 >50 0.0014695846799692865 0.08502469441724103 >100 2.2662755975758723E-4 0.03074802167866578 >500 2.8070714169672216E-5 0.017087205688759724 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.552940800110818E-5 0.0 0.0 0.0 3 0.0 1.552940800110818E-5 0.0 0.0 0.0 4 0.0 6.211763200443272E-5 0.0 0.0 0.0 5 3.882352000277045E-6 6.211763200443272E-5 0.0 0.0 0.0 6 3.882352000277045E-6 6.211763200443272E-5 0.0 0.0 3.882352000277045E-6 7 3.882352000277045E-6 6.599998400470976E-5 0.0 0.0 3.882352000277045E-6 8 3.882352000277045E-6 8.152939200581794E-5 0.0 3.882352000277045E-6 3.882352000277045E-6 9 3.882352000277045E-6 1.902352480135752E-4 0.0 3.882352000277045E-6 3.882352000277045E-6 10-11 3.882352000277045E-6 1.902352480135752E-4 0.0 7.76470400055409E-6 3.882352000277045E-6 12-13 3.882352000277045E-6 1.9605877601399076E-4 0.0 7.76470400055409E-6 5.823528000415567E-6 14-15 3.882352000277045E-6 2.5429405601814646E-4 0.0 7.76470400055409E-6 1.1647056000831134E-5 16-17 3.882352000277045E-6 2.7176464001939314E-4 0.0 1.9411760001385224E-5 2.329411200166227E-5 18-19 3.882352000277045E-6 3.2029404002285617E-4 0.0 2.7176464001939314E-5 2.329411200166227E-5 20-21 3.882352000277045E-6 3.785293200270119E-4 0.0 4.658822400332454E-5 2.329411200166227E-5 22-23 3.882352000277045E-6 4.1347048802950525E-4 0.0 1.4170584801011214E-4 3.299999200235488E-5 24-25 3.882352000277045E-6 4.484116560319987E-4 0.0 4.0958813602922826E-4 5.2411752003740105E-5 26-27 7.76470400055409E-6 4.658822400332454E-4 0.0 0.0010928820880779881 5.435292800387863E-5 28-29 7.76470400055409E-6 4.658822400332454E-4 0.0 0.005827410352415845 5.629410400401715E-5 30-31 7.76470400055409E-6 4.891763520349076E-4 0.0 0.014780114065054709 5.823528000415567E-5 32-33 7.76470400055409E-6 4.949998800353231E-4 0.0 0.03277093323433854 6.211763200443272E-5 34-35 7.76470400055409E-6 5.668233920404485E-4 0.0 0.05501875137192613 6.599998400470976E-5 36-37 7.76470400055409E-6 6.250586720446042E-4 0.0 0.09072086036647384 6.98823360049868E-5 38-39 7.76470400055409E-6 6.54176312046682E-4 0.0 0.16669654783589546 7.76470400055409E-5 40-41 7.76470400055409E-6 7.43470408053054E-4 0.0 0.24868211620174596 8.152939200581794E-5 42-43 7.76470400055409E-6 7.687056960548549E-4 0.0 0.31662909973459463 8.152939200581794E-5 44-45 7.76470400055409E-6 8.638233200616424E-4 0.0 0.4056553134529476 8.735292000623351E-5 46-47 7.76470400055409E-6 9.356468320667677E-4 0.0 0.49352652745121806 9.705880000692612E-5 48-49 7.76470400055409E-6 9.395291840670447E-4 0.0 0.5728449199928782 1.0094115200720317E-4 50-51 7.76470400055409E-6 9.783527040698153E-4 0.0 0.6556865469747898 1.0482350400748021E-4 52-53 7.76470400055409E-6 9.861174080703693E-4 0.0 0.8069856867775864 1.222940880087269E-4 54-55 7.76470400055409E-6 9.899997600706463E-4 0.0 0.9761844104776605 1.4558820001038918E-4 56-57 7.76470400055409E-6 0.0010094115200720317 0.0 1.1500943683300706 1.5141172801080475E-4 58-59 7.76470400055409E-6 0.0010094115200720317 0.0 1.256488283721663 1.5141172801080475E-4 60-61 7.76470400055409E-6 0.0010307644560735552 0.0 1.3372101465114232 1.5141172801080475E-4 62-63 7.76470400055409E-6 0.0010559997440753562 0.0 1.3991530726758437 1.552940800110818E-4 64-65 7.76470400055409E-6 0.0011569408960825592 0.0 1.412642304700806 1.5917643201135884E-4 66-67 7.76470400055409E-6 0.0011647056000831134 0.0 1.4218784201094654 1.6694113601191293E-4 68-69 7.76470400055409E-6 0.0011821761840843602 0.0 1.4307709473660999 1.727646640123285E-4 70-71 7.76470400055409E-6 0.0012015879440857454 0.0 1.438706474854666 1.8635289601329815E-4 72-73 7.76470400055409E-6 0.0012074114720861608 0.0 1.445446237927147 1.902352480135752E-4 74-75 7.76470400055409E-6 0.0012307055840878232 0.0 1.4506699425435197 1.902352480135752E-4 76-77 7.76470400055409E-6 0.0012695291040905935 0.0 1.454946353271825 1.9799995201412929E-4 78-79 7.76470400055409E-6 0.0013005879200928099 0.0 1.4584967641760782 2.0576465601468338E-4 80-81 7.76470400055409E-6 0.0013025290960929485 0.0 1.4598206462081729 2.077058320148219E-4 82-83 7.76470400055409E-6 0.001304470272093087 0.0 1.4612338223362737 2.0964700801496042E-4 84-85 7.76470400055409E-6 0.001304470272093087 0.0 1.4620122339123292 2.0964700801496042E-4 86-87 7.76470400055409E-6 0.001308352624093364 0.0 1.4624179396963581 2.0964700801496042E-4 88 7.76470400055409E-6 0.0013238820320944722 0.0 1.4624470573363602 2.0964700801496042E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 29360 0.0 48.35741 1 GTATCAA 48730 0.0 30.666288 1 ATCAACG 66600 0.0 26.218876 2 TCAACGC 67450 0.0 25.85877 3 TATCAAC 69845 0.0 25.278074 1 CAACGCA 68955 0.0 25.181173 4 AACGCAG 71395 0.0 24.411804 5 ACGCAGA 82470 0.0 20.948965 6 CGCAGAG 84230 0.0 20.698092 7 CAGAGTA 90320 0.0 18.453566 9 GCAGAGT 91160 0.0 18.048859 8 AGAGTAC 83665 0.0 17.676966 10-11 TATACCG 2305 0.0 15.931437 5 GAGTACT 62135 0.0 15.623951 12-13 AGTACTT 68660 0.0 15.611614 12-13 GTACATG 54360 0.0 14.616973 1 TACATGG 54555 0.0 14.247444 2 GTACTTT 70265 0.0 13.873505 14-15 GTGGTAT 13605 0.0 13.84355 1 TATACTG 16170 0.0 13.476223 5 >>END_MODULE