##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139187_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 31839222 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.749081306069602 31.0 31.0 34.0 30.0 34.0 2 31.910664745514197 31.0 31.0 34.0 30.0 34.0 3 31.96530917118515 31.0 31.0 34.0 30.0 34.0 4 35.69082130838498 37.0 35.0 37.0 33.0 37.0 5 35.54304065595573 37.0 35.0 37.0 33.0 37.0 6 35.54282940707534 37.0 35.0 37.0 33.0 37.0 7 35.42110557852199 37.0 35.0 37.0 33.0 37.0 8 35.414806178367044 37.0 35.0 37.0 33.0 37.0 9 37.004623071505954 39.0 37.0 39.0 33.0 39.0 10-11 36.8658410371962 39.0 37.0 39.0 33.0 39.0 12-13 36.818796985680116 39.0 37.0 39.0 32.0 39.0 14-15 37.94064363444559 40.0 37.0 41.0 33.0 41.0 16-17 37.9353956261871 40.0 37.0 41.0 33.0 41.0 18-19 37.95843898132938 40.0 37.0 41.0 33.0 41.0 20-21 37.93882989058162 40.0 37.0 41.0 33.0 41.0 22-23 37.83569077597928 40.0 37.0 41.0 32.0 41.0 24-25 37.73230835100379 39.5 37.0 41.0 32.0 41.0 26-27 37.5510697598818 39.0 36.5 41.0 32.0 41.0 28-29 37.40498743355312 39.0 36.0 41.0 32.0 41.0 30-31 37.25690912630221 39.0 36.0 40.0 31.0 41.0 32-33 37.417806622213334 39.0 36.0 40.5 32.0 41.0 34-35 37.37137120059862 39.0 36.0 41.0 31.0 41.0 36-37 37.224508464410974 39.0 36.0 40.5 31.0 41.0 38-39 37.04339049140399 39.0 36.0 40.0 31.0 41.0 40-41 36.962050226097446 39.0 35.0 40.0 31.0 41.0 42-43 36.83462108365997 39.0 35.0 40.0 30.0 41.0 44-45 36.8994708576788 39.0 35.0 40.0 30.5 41.0 46-47 37.066855426359666 39.0 36.0 40.0 31.0 41.0 48-49 36.98085179713914 39.0 35.0 40.0 31.0 41.0 50-51 36.82531791623305 39.0 35.0 40.0 30.0 41.0 52-53 36.66543174579836 39.0 35.0 40.0 30.0 41.0 54-55 36.51448988421504 38.0 35.0 40.0 30.0 41.0 56-57 36.342312878335086 38.0 35.0 40.0 30.0 41.0 58-59 36.182599392337394 38.0 34.0 40.0 29.5 41.0 60-61 35.93394266222123 38.0 34.0 40.0 29.0 41.0 62-63 35.651364790288504 37.0 34.0 40.0 28.5 41.0 64-65 35.40733147251076 37.0 34.0 39.5 28.0 41.0 66-67 35.128180803948204 36.0 33.5 39.0 28.0 41.0 68-69 34.8370834266439 36.0 33.0 39.0 28.0 40.0 70-71 34.521607547374316 35.5 33.0 38.5 28.0 40.0 72-73 34.196429993568046 35.0 33.0 38.0 28.0 40.0 74-75 33.8659536618042 35.0 32.0 37.0 27.0 39.5 76-77 32.777546712113484 34.0 31.0 36.0 26.0 39.0 78-79 33.18497115381961 34.5 32.0 36.0 26.0 39.0 80-81 33.08407692034521 34.5 32.0 36.0 26.0 38.0 82-83 32.85824038570077 34.0 32.0 35.5 26.0 37.0 84-85 32.65706049259809 34.0 31.0 35.0 26.0 37.0 86-87 32.45951513133171 34.0 31.0 35.0 26.0 36.0 88-89 32.24312070106396 34.0 31.0 35.0 26.0 36.0 90-91 32.11626588895213 34.0 31.0 35.0 26.0 36.0 92-93 32.04189585144198 34.0 31.0 35.0 26.0 35.0 94-95 32.02092900108812 34.0 31.0 35.0 26.0 35.0 96-97 31.942355422116723 34.0 31.0 35.0 26.0 35.0 98-99 32.135805299125096 34.0 31.0 35.0 26.5 35.0 100-101 31.38819193709703 33.0 30.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 0.0 14 0.0 15 2.0 16 0.0 17 2.0 18 7.0 19 61.0 20 314.0 21 2101.0 22 9533.0 23 31729.0 24 80595.0 25 166554.0 26 292170.0 27 448495.0 28 624808.0 29 811213.0 30 1006550.0 31 1227962.0 32 1497223.0 33 1864299.0 34 2410610.0 35 3240897.0 36 4604696.0 37 6183425.0 38 5255461.0 39 2029480.0 40 51033.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.50027560346795 22.469006937418257 15.6081106504424 24.422606808671393 2 14.483521696644235 23.213064370677085 39.572894704243346 22.730519228435334 3 17.123750699687324 27.456616245208505 31.519005081217124 23.90062797388705 4 12.500252047615987 19.704850200171347 38.33915288507992 29.455744867132744 5 12.904467326494348 38.189997230459966 35.98444396662707 12.921091476418614 6 29.495953136040825 39.16189283770816 18.460714900634194 12.881439125616826 7 25.71974277512183 32.70349068202734 24.072968868397602 17.503797674453224 8 24.40680868395591 37.11668896934731 21.042307503619277 17.43419484307751 9 25.44693774238579 15.851850902638262 21.21549640880044 37.485714946175506 10-11 24.180250070180733 26.954069417902232 29.12060005737577 19.74508045454126 12-13 24.884023548062824 24.580729390938007 29.070762156185854 21.464484904813315 14-15 22.019545578092327 25.704651325965187 26.586273056546418 25.689530039396065 16-17 21.7371187650251 28.761216275950463 27.179781591396925 22.321883367627514 18-19 21.905422949862093 27.97041639889528 28.67905243893819 21.445108212304437 20-21 22.797916150162905 27.108726040311215 28.51188713285201 21.581470676673874 22-23 22.521143435961257 27.11225923776004 28.351843022023704 22.014754304255 24-25 22.320826157809293 27.2591662746793 28.48025629610696 21.93975127140445 26-27 22.239388323150205 27.268621694905537 28.42133662020397 22.07065336174029 28-29 22.307007281261466 27.324711250301025 28.37950035484379 21.98878111359372 30-31 22.60768222278721 27.014332728943995 28.336059242311624 22.041925805957167 32-33 22.462203606634855 27.1698228505367 28.21065736274483 22.15731618008362 34-35 22.537316683760793 27.24711436334779 28.226408707641465 21.98916024524995 36-37 22.62704111774291 27.12467926991132 28.10045235997253 22.147827252373244 38-39 22.298257977374696 27.385915349432675 28.185545094053822 22.130281579138806 40-41 22.43654939766738 27.16651642423925 28.18288566374063 22.214048514352744 42-43 22.28354324702514 27.39786349363042 27.871031229099746 22.44756203024469 44-45 22.325559767283558 27.36542902161696 27.77994657518446 22.52906463591502 46-47 22.474881824903708 27.318683217173113 27.66578260080686 22.54065235711632 48-49 22.582506724067457 27.57695368025664 27.416876354545238 22.42366324113066 50-51 22.547835079461596 27.532334804589087 27.403878966579136 22.51595114937018 52-53 22.701728442716938 27.434152479163142 27.333308270285663 22.53081080783426 54-55 22.681220714200823 27.361532952601348 27.345429976614106 22.611816356583724 56-57 22.683553315042612 27.565929093305392 27.165935218711745 22.58458237294025 58-59 22.54058186783459 27.514440963255478 27.387579279828326 22.557397889081606 60-61 22.65600947237214 27.512638006035207 27.234555951971164 22.596796569621496 62-63 22.59515588811687 27.533482985925527 27.394391590949578 22.476969535008017 64-65 22.667355011886237 27.45201692009738 27.309266495495084 22.571361572521305 66-67 22.713950341848932 27.608126773513526 27.016934193682363 22.66098869095518 68-69 22.659463026989616 27.51249239024549 27.090384879349788 22.737659703415105 70-71 22.661030981693273 27.372823860834718 27.13526821073448 22.830876946737526 72-73 22.61037812527157 27.434894139729458 27.023223619278276 22.931504115720696 74-75 22.528790248463302 27.419807123127484 27.055843289123672 22.995559339285546 76-77 22.693283433505687 27.486576531477102 26.96488007809495 22.855259956922264 78-79 22.55437588529645 27.502165596718047 26.99723687561256 22.946221642372937 80-81 22.618225904349277 27.40851312708784 27.053800332510843 22.919460636052044 82-83 22.751150923705605 27.271244830268536 27.25412434880081 22.72347989722504 84-85 22.667195180712437 27.34493508463544 27.194889313266195 22.79298042138593 86-87 22.49757571945019 27.540928394412607 27.1381647913019 22.8233310948353 88-89 22.707113776449123 27.35198507581755 27.067145771533426 22.87375537619991 90-91 22.680139665445925 27.386055982092376 27.148589731112306 22.785214621349393 92-93 22.7088469634953 27.324815037126115 27.273278466001333 22.69305953337725 94-95 22.34953140513653 27.447883804311168 27.406822496369887 22.795762294182413 96-97 22.228637262647663 27.48947317097311 27.51396572771506 22.767923838664164 98-99 22.44645040238982 28.11307689810057 27.59907272269613 21.841399976813484 100-101 22.826047446150625 30.929192504936303 24.853872490749396 21.390887558163676 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8754.0 1 7619.0 2 9548.0 3 13196.5 4 16791.0 5 24609.0 6 31306.5 7 38000.0 8 43769.5 9 44662.5 10 41516.5 11 37694.0 12 41128.0 13 54925.0 14 88104.0 15 134318.0 16 168861.0 17 182357.5 18 181898.5 19 173836.0 20 161495.5 21 150761.5 22 148515.5 23 162354.0 24 193020.5 25 239539.5 26 298185.5 27 359779.5 28 423181.5 29 486624.5 30 545010.5 31 604184.0 32 667750.0 33 731249.5 34 792294.0 35 854477.0 36 923552.5 37 979468.0 38 1021662.5 39 1065117.5 40 1107955.0 41 1147476.5 42 1172514.0 43 1197111.5 44 1227121.5 45 1265714.5 46 1312010.0 47 1355211.0 48 1377567.0 49 1371699.0 50 1344533.0 51 1321792.5 52 1263984.0 53 1170445.5 54 1103038.5 55 1040319.5 56 968589.0 57 882752.0 58 788336.5 59 683476.0 60 579404.0 61 491050.0 62 404234.5 63 327111.0 64 265597.0 65 211978.5 66 168696.5 67 121651.5 68 80752.5 69 60565.5 70 43868.0 71 29048.5 72 19980.5 73 14372.5 74 11155.5 75 8359.0 76 5428.5 77 3067.5 78 2288.5 79 1894.5 80 1324.0 81 865.5 82 659.5 83 423.0 84 261.5 85 179.5 86 126.5 87 96.5 88 65.0 89 43.0 90 28.0 91 19.0 92 14.0 93 8.0 94 4.5 95 3.0 96 3.0 97 3.0 98 2.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0023555851961458104 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 8.951223745354079E-5 20-21 0.0019411212689128582 22-23 3.518422238941709E-4 24-25 3.9279900131011036E-5 26-27 2.687981595720117E-4 28-29 0.003518351213488298 30-31 3.369779652313064E-4 32-33 4.7345931485986626E-5 34-35 0.0019089841924711944 36-37 0.05314667807508204 38-39 0.028552793472020006 40-41 0.04125211846464436 42-43 8.177103338370581E-4 44-45 0.002293047623636676 46-47 0.0014167998271140505 48-49 4.808457515783553E-4 50-51 1.011118188189452E-5 52-53 8.735732797795523E-4 54-55 0.002096992157711902 56-57 9.78257923820048E-4 58-59 0.003599315540338827 60-61 0.001304464913692635 62-63 8.729726923986829E-5 64-65 6.338180955390388E-4 66-67 3.151384993629284E-4 68-69 8.483194340189777E-5 70-71 8.146471159829167E-4 72-73 0.0015240723440223185 74-75 3.4529187810199196E-4 76-77 5.832473966898261E-4 78-79 8.476681074198933E-5 80-81 0.0020077641822316434 82-83 0.002420444317505587 84-85 0.003571062268889705 86-87 0.0036759310919079035 88-89 0.06816665425774032 90-91 5.795666875128421E-4 92-93 5.37749246495673E-5 94-95 4.609225909546615E-5 96-97 0.007578344912943762 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1230.0 20-21 3873.0 22-23 7551.0 24-25 14213.0 26-27 16902.0 28-29 27237.0 30-31 66724.0 32-33 86491.0 34-35 121567.0 36-37 186841.0 38-39 204666.0 40-41 223711.0 42-43 256500.0 44-45 300174.0 46-47 303237.0 48-49 282202.0 50-51 258549.0 52-53 230802.0 54-55 251309.0 56-57 265620.0 58-59 290635.0 60-61 302767.0 62-63 291430.0 64-65 313635.0 66-67 332940.0 68-69 349062.0 70-71 354532.0 72-73 343640.0 74-75 348917.0 76-77 344760.0 78-79 380749.0 80-81 397003.0 82-83 387801.0 84-85 397192.0 86-87 429843.0 88-89 473608.0 90-91 535169.0 92-93 587120.0 94-95 779084.0 96-97 968039.0 98-99 2878085.0 100-101 1.7243812E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.36676648263273 #Duplication Level Percentage of deduplicated Percentage of total 1 88.50906215700547 72.0169619212589 2 7.580640802544021 12.336244599386339 3 1.9750585780410663 4.821123903269642 4 0.8094590625246587 2.6345226607077885 5 0.40204470264948255 1.6356538718029976 6 0.20928044784288224 1.0217083997407557 7 0.12853647533219512 0.732101816099878 8 0.0886225334884131 0.5768743189960805 9 0.0585350119397009 0.42865241828001854 >10 0.22917780539552113 2.9598850228161226 >50 0.0068824244766767 0.3799515580622871 >100 0.0025978115804558186 0.37338435429691386 >500 5.6169990618219626E-5 0.024780541369158204 >1k 4.601718885935234E-5 0.05815461391314698 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.140780261527747E-6 6.281560523055494E-6 2 0.0 4.397092366138846E-5 0.0 9.422340784583242E-6 6.281560523055494E-6 3 0.0 4.711170392291621E-5 0.0 9.422340784583242E-6 6.281560523055494E-6 4 0.0 1.193496499380544E-4 0.0 1.5703901307638734E-5 6.281560523055494E-6 5 3.140780261527747E-6 1.2563121046110987E-4 0.0 1.5703901307638734E-5 9.422340784583242E-6 6 2.198546183069423E-5 1.2563121046110987E-4 0.0 1.5703901307638734E-5 2.5126242092221978E-5 7 2.198546183069423E-5 1.2877199072263763E-4 0.0 1.8844681569166483E-5 2.8267022353749723E-5 8 3.454858287680522E-5 1.4447589203027636E-4 0.0 3.140780261527747E-5 3.7689363138332966E-5 9 3.454858287680522E-5 2.7638866301444177E-4 0.0 3.7689363138332966E-5 3.7689363138332966E-5 10-11 5.0252484184443955E-5 2.7638866301444177E-4 0.0 4.71117039229162E-5 4.083014339986071E-5 12-13 5.0252484184443955E-5 2.8109983340673337E-4 0.0 6.281560523055494E-5 4.240053353062459E-5 14-15 5.0252484184443955E-5 3.5961933994492707E-4 0.0 7.223794601513818E-5 5.6534044707499446E-5 16-17 5.0252484184443955E-5 3.721824609910381E-4 0.0 7.69491164074298E-5 6.281560523055494E-5 18-19 5.810443483826332E-5 4.1772377478319035E-4 0.0 8.32306769304853E-5 6.281560523055494E-5 20-21 7.22379460151382E-5 4.7582820962145374E-4 0.0 1.1777925980729052E-4 6.281560523055494E-5 22-23 8.480106706124918E-5 5.559181062904112E-4 0.0 2.60684761706803E-4 6.595638549208269E-5 24-25 1.0364574863041566E-4 6.140225411286745E-4 0.0 8.32306769304853E-4 7.223794601513818E-5 26-27 1.2563121046110987E-4 6.344376128286049E-4 0.0 0.0024906387473915036 7.223794601513818E-5 28-29 1.2877199072263763E-4 6.360080029593688E-4 0.0 0.013968620213144656 7.223794601513818E-5 30-31 1.3348316111492926E-4 6.972532180591598E-4 0.0 0.02135259460799639 7.223794601513818E-5 32-33 1.49187062422568E-4 7.098163391052708E-4 0.0 0.027488108848890844 8.166028679972142E-5 34-35 1.6960213412249835E-4 8.118916976049226E-4 0.0 0.035731086645270416 8.794184732277691E-5 36-37 1.6960213412249835E-4 9.123966659738106E-4 0.0 0.048181139601966405 8.794184732277691E-5 38-39 1.7588369464555386E-4 9.485156389813797E-4 0.0 0.07293205845293582 9.736418810736016E-5 40-41 1.9158759595319256E-4 0.0010113312442119346 0.0 0.1205572799486118 1.0050496836888791E-4 42-43 1.9158759595319256E-4 0.0010537317777425592 0.0 0.14288351643768182 1.0207535849965179E-4 44-45 1.962987663454842E-4 0.001202918840165127 0.0 0.1767426980470817 1.0521613876117953E-4 46-47 2.072914972608313E-4 0.0013097053690570705 0.0 0.21584070113270984 1.1463847954576277E-4 48-49 2.072914972608313E-4 0.001314416539449362 0.0 0.24897593289182757 1.3191277098416538E-4 50-51 2.1043227752235905E-4 0.001451040480825819 0.0 0.2838370234046548 1.3191277098416538E-4 52-53 2.1043227752235905E-4 0.0014604628216104024 0.0 0.32644955960293254 1.4290550189951248E-4 54-55 2.1043227752235905E-4 0.0014730259426565134 0.0 0.4130832719467831 1.554686229456235E-4 56-57 2.2142500843770618E-4 0.0014918706242256798 0.0 0.5026598953956852 1.5860940320715122E-4 58-59 2.386992998761088E-4 0.0014934410143564439 0.0 0.5782945952636657 1.6175018346867897E-4 60-61 2.4498086039916424E-4 0.0015358415478870682 0.0 0.6207343885475594 1.6332057359944285E-4 62-63 2.528328110529836E-4 0.001565678960371582 0.0 0.6439431842901187 1.7588369464555383E-4 64-65 2.544032011837475E-4 0.0017604073365863023 0.0 0.6606222978689618 1.7902447490708158E-4 66-67 2.559735913145114E-4 0.0017886743589400518 0.0 0.669791805842492 1.8687642556090096E-4 68-69 2.5754398144527525E-4 0.0018295045023399127 0.0 0.6787681558299383 1.9158759595319256E-4 70-71 2.60684761706803E-4 0.0018577715246936625 0.0 0.6872985150202477 1.9472837621472032E-4 72-73 2.73247882752914E-4 0.0018703346457397733 0.0 0.6948253949169989 2.0886188739159517E-4 74-75 2.73247882752914E-4 0.001912735179270398 0.0 0.7016691551068679 2.1043227752235905E-4 76-77 2.7638866301444177E-4 0.0019849731252855364 0.0 0.7078297955898545 2.1043227752235905E-4 78-79 2.795294432759695E-4 0.0020038178068547026 0.0 0.7135444452757043 2.1043227752235905E-4 80-81 2.826702235374972E-4 0.0020069585871162303 0.0 0.7179650934938047 2.1671383804541455E-4 82-83 2.842406136682611E-4 0.0020132401476392857 0.0 0.721493760117631 2.2927695909152554E-4 84-85 2.889517840605527E-4 0.002024232878554633 0.0 0.7246188364778512 2.2927695909152554E-4 86-87 2.920925643220805E-4 0.002041507169993036 0.0 0.7251496283420493 2.324177393530533E-4 88-89 2.952333445836082E-4 0.002123167456792757 0.0 0.7252250070683259 2.4184008013763652E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 36145 0.0 52.33948 1 GTATCAA 65045 0.0 35.029377 1 TCAACGC 85070 0.0 26.101812 4 ATCAACG 85590 0.0 25.948135 3 CAACGCA 86920 0.0 25.54626 5 TATCAAC 88825 0.0 25.202372 2 AACGCAG 89335 0.0 24.93556 6 ACGCAGA 103705 0.0 21.451998 7 GTACATG 96630 0.0 19.59526 1 ATACAAC 31705 0.0 19.491873 6 CGCAGAG 114930 0.0 19.397003 8 TATATAC 43055 0.0 19.316767 3 TACATGG 96620 0.0 19.123652 2 ACATGGG 97445 0.0 18.564806 3 AGAGTAC 111245 0.0 18.560154 10-11 TATACAA 38000 0.0 18.450426 5 GCAGAGT 123035 0.0 17.921303 9 CATATAT 41770 0.0 17.459099 1 GAGTACT 68520 0.0 17.416359 12-13 CAGAGTA 119035 0.0 17.021042 10-11 >>END_MODULE