##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139186_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7235382 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.805531345822516 31.0 31.0 34.0 30.0 34.0 2 31.958743159656255 31.0 31.0 34.0 30.0 34.0 3 32.01900922439202 33.0 31.0 34.0 30.0 34.0 4 35.729498456335826 37.0 35.0 37.0 33.0 37.0 5 35.58292374887739 37.0 35.0 37.0 33.0 37.0 6 35.58258610257206 37.0 35.0 37.0 33.0 37.0 7 35.46299836000366 37.0 35.0 37.0 33.0 37.0 8 35.45466666445531 37.0 35.0 37.0 33.0 37.0 9 37.05311661499006 39.0 37.0 39.0 33.0 39.0 10-11 36.92157615174983 39.0 37.0 39.0 33.0 39.0 12-13 36.878284380838494 39.0 37.0 39.0 33.0 39.0 14-15 38.01847967391355 40.0 37.0 41.0 33.0 41.0 16-17 38.01165646817265 40.0 37.0 41.0 33.0 41.0 18-19 38.034597551311045 40.0 37.0 41.0 33.0 41.0 20-21 38.01819469859279 40.0 37.0 41.0 33.0 41.0 22-23 37.9212765219455 40.0 37.0 41.0 33.0 41.0 24-25 37.816922353986044 40.0 37.0 41.0 32.0 41.0 26-27 37.643840126787154 39.5 37.0 41.0 32.0 41.0 28-29 37.503381992906874 39.0 36.5 41.0 32.0 41.0 30-31 37.36276825939396 39.0 36.0 40.5 31.5 41.0 32-33 37.52188205010237 39.0 36.0 41.0 32.0 41.0 34-35 37.48309223141716 39.0 36.0 41.0 32.0 41.0 36-37 37.33961916843933 39.0 36.0 41.0 31.0 41.0 38-39 37.17089175458224 39.0 36.0 40.0 31.0 41.0 40-41 37.09638167992906 39.0 36.0 40.0 31.0 41.0 42-43 36.97504251668167 39.0 35.0 40.0 31.0 41.0 44-45 37.040947485476266 39.0 35.5 40.0 31.0 41.0 46-47 37.19928656658071 39.0 36.0 41.0 31.0 41.0 48-49 37.119539062150395 39.0 36.0 41.0 31.0 41.0 50-51 36.97023884577534 39.0 35.0 40.5 31.0 41.0 52-53 36.81620627899916 39.0 35.0 40.0 30.0 41.0 54-55 36.67189091394593 39.0 35.0 40.0 30.0 41.0 56-57 36.5018266349868 38.0 35.0 40.0 30.0 41.0 58-59 36.34639759324702 38.0 35.0 40.0 30.0 41.0 60-61 36.10918800539869 38.0 34.0 40.0 29.0 41.0 62-63 35.82547353291816 37.5 34.0 40.0 29.0 41.0 64-65 35.589000920882846 37.0 34.0 40.0 29.0 41.0 66-67 35.318171670291036 36.5 34.0 39.0 28.5 41.0 68-69 35.02530829406387 36.0 33.5 39.0 28.0 40.5 70-71 34.713454334035774 36.0 33.0 39.0 28.0 40.0 72-73 34.38397266824539 35.0 33.0 38.0 28.0 40.0 74-75 34.05160300450442 35.0 32.5 37.5 28.0 39.5 76-77 32.954905087430745 34.0 31.0 36.0 26.0 39.0 78-79 33.35635003233649 35.0 32.0 36.0 27.0 39.0 80-81 33.241279651392276 35.0 32.0 36.0 27.0 38.5 82-83 33.00966311611154 34.5 32.0 35.5 27.0 37.0 84-85 32.81376719267877 34.0 32.0 35.0 27.0 37.0 86-87 32.61877120079386 34.0 31.5 35.0 26.0 36.5 88-89 32.39985899338652 34.0 31.0 35.0 26.0 36.0 90-91 32.2679717675457 34.0 31.0 35.0 26.0 36.0 92-93 32.20227123417243 34.0 31.0 35.0 26.0 35.0 94-95 32.167591723139225 34.0 31.0 35.0 26.0 35.0 96-97 32.08589863996525 34.0 31.0 35.0 26.0 35.0 98-99 32.26473358728017 34.0 31.0 35.0 27.0 35.0 100-101 31.520466577124015 33.0 30.0 34.5 25.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 12.0 20 61.0 21 406.0 22 1967.0 23 6749.0 24 17029.0 25 35746.0 26 62265.0 27 97332.0 28 135512.0 29 176766.0 30 220445.0 31 267860.0 32 327523.0 33 407249.0 34 527759.0 35 708272.0 36 1014895.0 37 1418815.0 38 1285371.0 39 508072.0 40 15275.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.65017520844097 22.34568955723416 15.451209072306066 24.552926162018814 2 14.325294733754848 22.944658967427735 39.84712738076514 22.88291891805228 3 17.016544530751798 27.327928228253878 31.431415784266814 24.22411145672751 4 12.361005956561796 19.491673003581568 38.61613664627521 29.531184393581434 5 12.8599568067035 38.1954815930935 36.04641745245794 12.898144147745066 6 29.453938990367064 39.08352040016685 18.631207032330842 12.83133357713525 7 25.64833480803087 32.69505328122275 24.193567112282395 17.463044798463994 8 24.269084894204617 37.05098086044386 21.26360432662712 17.4163299187244 9 25.360402532996872 16.042594572062676 21.344761064446907 37.25224183049354 10-11 24.05473546524565 26.90676870965486 29.31505896993414 19.723436855165353 12-13 24.760835018800666 24.554674514766464 29.212638669250634 21.471851797182236 14-15 21.92798528121943 25.734729693608436 26.66982890467981 25.667456120492325 16-17 21.717153289211268 28.720992201932116 27.281897486545976 22.27995702231064 18-19 21.846563967983133 28.056208846716757 28.699057484731092 21.398169700569017 20-21 22.670359719499192 27.21568829631538 28.516379513563905 21.59757247062152 22-23 22.385042318825434 27.185058022543824 28.366873420772354 22.063026237858388 24-25 22.203201800665457 27.331573744609543 28.489103902617163 21.976120552107837 26-27 22.163199607789622 27.338558885542618 28.399561834383107 22.098679672284653 28-29 22.22226451618038 27.390124045487845 28.37734577190953 22.010265666422246 30-31 22.47590566599237 27.178810635978166 28.282810785642106 22.062472912387356 32-33 22.28921071855139 27.340420042779705 28.20110447221594 22.16926476645297 34-35 22.389677111981854 27.388083794234593 28.22631868374889 21.995920410034664 36-37 22.483648081604006 27.244150060687605 28.1339573007307 22.13824455697769 38-39 22.206939857055357 27.514376035793127 28.165496795902012 22.11318731124951 40-41 22.364454052165804 27.281988197209195 28.15645120085018 22.197106549774823 42-43 22.213338853712337 27.53116277741689 27.875812887705496 22.379685481165275 44-45 22.229239893760884 27.50714976794398 27.8260845770958 22.437525761199336 46-47 22.388440470106787 27.456705178506663 27.657095516048933 22.49775883533761 48-49 22.41201413531361 27.688492879467958 27.467657979460906 22.431835005757524 50-51 22.38859580366193 27.680925618119524 27.423312042189448 22.5071665360291 52-53 22.557706083115182 27.594177801852872 27.337013572739277 22.511102542292676 54-55 22.56262446663616 27.4934175501047 27.350734997531017 22.593222985728126 56-57 22.549963329492023 27.623785301304586 27.27193852585699 22.554312843346402 58-59 22.422618465016573 27.628143345980604 27.407478203127848 22.54175998587497 60-61 22.442846766339656 27.491501508568177 27.429194946686753 22.63645677840542 62-63 22.65010915815913 27.529249709722293 27.47286115243001 22.347779979688564 64-65 22.443810108767455 27.468895966599323 27.437759581658288 22.649534342974935 66-67 22.47808759216142 27.588282199725583 27.218032149638937 22.71559805847406 68-69 22.44070051308885 27.712849618637513 27.24706849657744 22.599381371696197 70-71 22.43632232958786 27.548903458835284 27.293886652248784 22.720887559328077 72-73 22.423746355249932 27.612029416740473 26.98001565708334 22.984208570926256 74-75 22.337630808080384 27.571936568634285 27.035700094674937 23.054732528610394 76-77 22.488694989396617 27.359415277944123 27.207393604193925 22.944496128465335 78-79 22.351745854869783 27.40907052632996 27.164743359385923 23.074440259414335 80-81 22.694522664994636 27.352713415344727 26.9747371523732 22.97802676728743 82-83 22.70660253568429 27.48081602079543 27.151406157617426 22.661175285902857 84-85 22.474167511846453 27.314468986775957 27.09208100816607 23.119282493211514 86-87 22.3410056101692 27.640866088883175 27.080731458791956 22.937396842155668 88-89 22.721278147578328 27.22535894003912 27.037390001037664 23.015972911344893 90-91 22.71876985593719 27.483229898160864 27.095939111850708 22.702061134051238 92-93 22.461869476065345 27.40163930258852 27.19982588569701 22.93666533564912 94-95 22.426269766380383 27.24422108412568 27.36872620264712 22.960782946846813 96-97 22.32433956840888 27.54610725280065 27.459731521599508 22.669821657190965 98-99 22.594679417353344 27.99796335613136 27.59524016975575 21.812117056759547 100-101 22.775108561014303 30.917872356378247 24.895136694307357 21.41188238830009 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1874.0 1 1631.5 2 2057.5 3 2814.0 4 3579.0 5 5403.5 6 6951.0 7 8317.0 8 9443.5 9 9599.0 10 8988.0 11 8276.5 12 8987.0 13 11794.0 14 18481.5 15 27915.0 16 35293.5 17 38378.0 18 38528.5 19 37351.5 20 35381.0 21 33708.0 22 34041.0 23 37717.0 24 45204.0 25 56317.0 26 69887.5 27 84141.0 28 98559.0 29 113359.0 30 126695.0 31 140140.0 32 154924.0 33 169127.0 34 183307.0 35 197614.5 36 212246.0 37 224964.0 38 235591.0 39 245719.5 40 254346.5 41 262917.0 42 269344.0 43 275341.5 44 282106.5 45 289842.0 46 298267.5 47 305063.0 48 308702.5 49 307316.0 50 302036.0 51 295544.0 52 282154.5 53 263505.5 54 248570.5 55 233270.5 56 217205.0 57 199389.0 58 178165.5 59 153759.0 60 129578.5 61 108972.5 62 89127.0 63 71355.0 64 56662.0 65 45055.5 66 36109.5 67 26145.0 68 17794.5 69 13469.0 70 9751.5 71 6406.5 72 4434.0 73 3197.5 74 2416.5 75 1743.5 76 1133.5 77 689.0 78 511.5 79 414.0 80 286.0 81 182.0 82 132.5 83 84.5 84 50.5 85 32.5 86 22.5 87 19.0 88 20.0 89 19.5 90 16.0 91 11.0 92 7.5 93 4.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002874761830128665 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 1.1747824786583486E-4 20-21 0.0021216312538536635 22-23 3.870619832074541E-4 24-25 2.7654886376442462E-5 26-27 2.9050486910369355E-4 28-29 0.003667905103682335 30-31 3.810872627471957E-4 32-33 7.638979071280703E-5 34-35 0.0018597067848372187 36-37 0.055288849965339545 38-39 0.02821989414548063 40-41 0.040976535388938744 42-43 0.0010707517033875015 44-45 0.0025418510738816737 46-47 0.0014762706581534575 48-49 5.874991921886107E-4 50-51 0.0 52-53 0.001083965378594345 54-55 0.0024568650612837107 56-57 0.0010949705190593686 58-59 0.003922611406002102 60-61 0.0015373608427703984 62-63 1.7177321095272839E-4 64-65 8.28508193669866E-4 66-67 4.0707704236339035E-4 68-69 9.695852421369464E-5 70-71 9.903944020616573E-4 72-73 0.00152587890625 74-75 4.36830085361639E-4 76-77 7.405670905264104E-4 78-79 5.178065919885999E-5 80-81 0.002137888554673433 82-83 0.002527627907539727 84-85 0.00371536842714262 86-87 0.0038782490789847704 88-89 0.06896456845858809 90-91 6.878328764817424E-4 92-93 4.88865166978253E-5 94-95 6.02686777654785E-5 96-97 0.007719150430928605 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 220.0 20-21 840.0 22-23 1538.0 24-25 3076.0 26-27 3755.0 28-29 6229.0 30-31 15286.0 32-33 19757.0 34-35 27350.0 36-37 42271.0 38-39 46755.0 40-41 50292.0 42-43 57915.0 44-45 67215.0 46-47 68193.0 48-49 63980.0 50-51 58915.0 52-53 53238.0 54-55 57698.0 56-57 61197.0 58-59 40100.0 60-61 69181.0 62-63 66404.0 64-65 70865.0 66-67 75464.0 68-69 78543.0 70-71 80678.0 72-73 77057.0 74-75 78511.0 76-77 77955.0 78-79 86242.0 80-81 88925.0 82-83 86950.0 84-85 88846.0 86-87 95761.0 88-89 105517.0 90-91 117863.0 92-93 129530.0 94-95 168632.0 96-97 213089.0 98-99 673631.0 100-101 3959918.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.15928479397988 #Duplication Level Percentage of deduplicated Percentage of total 1 91.48891585372719 79.7410847238747 2 6.0623348299122135 10.567775359135645 3 1.3505685714610538 3.531437722613177 4 0.4826747326206442 1.682783379333633 5 0.22506389555029968 0.9808204084555556 6 0.1224715642875768 0.6404720370543073 7 0.07069426210492459 0.4313162926872367 8 0.045172021184871035 0.3149728847337494 9 0.031340203290993046 0.24584307337267997 >10 0.11749787737150043 1.6331329993147081 >50 0.00283789804835164 0.1687602189864009 >100 4.282904403331439E-4 0.0616009004382762 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3820970337157043E-5 0.0 0.0 0.0 3 0.0 1.3820970337157043E-5 0.0 0.0 0.0 4 0.0 9.67467923600993E-5 0.0 1.3820970337157043E-5 1.3820970337157043E-5 5 0.0 1.1056776269725634E-4 0.0 1.3820970337157043E-5 1.3820970337157043E-5 6 0.0 1.1056776269725634E-4 0.0 1.3820970337157043E-5 2.7641940674314086E-5 7 0.0 1.1056776269725634E-4 0.0 1.3820970337157043E-5 2.7641940674314086E-5 8 0.0 1.3820970337157044E-4 0.0 1.3820970337157043E-5 4.1462911011471126E-5 9 0.0 2.3495649573166972E-4 0.0 1.3820970337157043E-5 4.1462911011471126E-5 10-11 0.0 2.3495649573166972E-4 0.0 4.837339618004965E-5 4.1462911011471126E-5 12-13 0.0 2.556879512374053E-4 0.0 6.910485168578522E-5 4.1462911011471126E-5 14-15 0.0 3.17882317754612E-4 0.0 8.983630719152077E-5 4.1462911011471126E-5 16-17 0.0 3.17882317754612E-4 0.0 1.1056776269725634E-4 4.1462911011471126E-5 18-19 0.0 3.3861377326034755E-4 0.0 1.4512018854014895E-4 4.1462911011471126E-5 20-21 0.0 3.593452287660831E-4 0.0 1.7967261438304154E-4 4.1462911011471126E-5 22-23 0.0 4.2845008045186834E-4 0.0 2.625984364059838E-4 4.837339618004965E-5 24-25 0.0 5.04465417306232E-4 0.0 6.49585605846381E-4 5.528388134862817E-5 26-27 0.0 5.390178431491247E-4 0.0 0.00214916088742792 5.528388134862817E-5 28-29 1.3820970337157043E-5 5.390178431491247E-4 0.0 0.014235599447271754 5.528388134862817E-5 30-31 1.3820970337157043E-5 6.35764635509224E-4 0.0 0.02158144518147072 5.528388134862817E-5 32-33 2.7641940674314086E-5 6.35764635509224E-4 0.0 0.02630821703677843 5.528388134862817E-5 34-35 5.528388134862817E-5 7.048694871950092E-4 0.0 0.033204881235019794 5.528388134862817E-5 36-37 6.910485168578522E-5 7.739743388807944E-4 0.0 0.04299703871889556 5.528388134862817E-5 38-39 6.910485168578522E-5 7.9470579438653E-4 0.0 0.06331386511451642 5.528388134862817E-5 40-41 6.910485168578522E-5 8.707211312408937E-4 0.0 0.10435523653070425 6.21943665172067E-5 42-43 8.292582202294225E-5 8.983630719152078E-4 0.0 0.1230964723078892 6.910485168578522E-5 44-45 8.292582202294225E-5 0.001008930834612464 0.0 0.15115995257748657 6.910485168578522E-5 46-47 8.292582202294225E-5 0.0010918566566354064 0.0 0.18386036839520015 6.910485168578522E-5 48-49 9.67467923600993E-5 0.0010918566566354064 0.0 0.2111636952962539 1.1056776269725634E-4 50-51 9.67467923600993E-5 0.0011886034489955058 0.0 0.23879872548539938 1.1056776269725634E-4 52-53 9.67467923600993E-5 0.0011886034489955058 0.0 0.2757836421076316 1.3820970337157044E-4 54-55 1.0365727752867783E-4 0.0012162453896698198 0.0 0.35219287661660437 1.5203067370872747E-4 56-57 1.1056776269725634E-4 0.0012162453896698198 0.0 0.43316994182200746 1.58941158877306E-4 58-59 1.1056776269725634E-4 0.0012162453896698198 0.0 0.5016528498426206 1.658516440458845E-4 60-61 1.2438873303441338E-4 0.0012507978155127124 0.0 0.8903538196048253 1.658516440458845E-4 62-63 1.2438873303441338E-4 0.0012646187858498695 0.0 0.9004984118322985 1.934935847201986E-4 64-65 1.3820970337157044E-4 0.0015064857667501177 0.0 0.9114446203393269 1.934935847201986E-4 66-67 1.5203067370872747E-4 0.0015341277074244317 0.0 0.9204489825139848 1.934935847201986E-4 68-69 1.5203067370872747E-4 0.0015617696480987459 0.0 0.9296883011843742 2.004040698887771E-4 70-71 1.5203067370872747E-4 0.001575590618435903 0.0 0.9384507963781319 2.211355253945127E-4 72-73 1.5203067370872747E-4 0.001575590618435903 0.0 0.9455271331907562 2.3495649573166972E-4 74-75 1.5203067370872747E-4 0.0016239640146159524 0.0 0.95197461585304 2.3495649573166972E-4 76-77 1.5203067370872747E-4 0.0016930688663017379 0.0 0.958055842801389 2.3495649573166972E-4 78-79 1.58941158877306E-4 0.0017276212921446305 0.0 0.9638260979171521 2.3495649573166972E-4 80-81 1.658516440458845E-4 0.001734531777313209 0.0 0.9677305220373991 2.4186698090024824E-4 82-83 1.658516440458845E-4 0.0017414422624817873 0.0 0.9709991815221366 2.4877746606882675E-4 84-85 1.658516440458845E-4 0.0017414422624817873 0.0 0.9739637796594568 2.4877746606882675E-4 86-87 1.658516440458845E-4 0.0017552632328189444 0.0 0.97433694585856 2.4877746606882675E-4 88-89 1.658516440458845E-4 0.0018174575993361512 0.0 0.9743922297399087 2.4877746606882675E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7475 0.0 48.535816 1 GTATCAA 13105 0.0 33.36912 1 TCAACGC 16900 0.0 25.20293 4 ATCAACG 17030 0.0 24.961115 3 CAACGCA 17305 0.0 24.613092 5 ACCGAGG 6090 0.0 24.380709 92-93 GACCGAG 6010 0.0 24.35946 90-91 GAGACCG 5945 0.0 24.179989 88-89 CGAGACC 6185 0.0 23.785675 88-89 TATCAAC 18075 0.0 23.70477 2 AACGCAG 17950 0.0 23.68177 6 AGACCGA 6210 0.0 23.47288 90-91 ACGAGAC 6570 0.0 22.615482 86-87 CACGAGA 6815 0.0 21.583992 86-87 GCCCACG 7095 0.0 20.761198 82-83 ACGCAGA 20910 0.0 20.369658 7 GTACATG 20110 0.0 20.322327 1 TACATGG 19840 0.0 20.23825 2 CCCACGA 7210 0.0 20.205563 84-85 CCACGAG 7420 0.0 20.025597 84-85 >>END_MODULE