##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10000332 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.87755026533119 31.0 30.0 31.0 26.0 34.0 2 30.38427394210512 31.0 30.0 31.0 27.0 34.0 3 30.007987934800564 31.0 30.0 31.0 26.0 34.0 4 33.87241223591377 35.0 35.0 37.0 30.0 37.0 5 33.635599898083385 35.0 33.0 37.0 28.0 37.0 6 33.629826389763856 35.0 33.0 37.0 28.0 37.0 7 33.59235353386268 35.0 33.0 37.0 28.0 37.0 8 33.49689460309918 35.0 33.0 37.0 28.0 37.0 9 34.762505684811266 37.0 33.0 39.0 28.0 39.0 10-11 34.759204344415764 37.0 33.0 39.0 28.0 39.0 12-13 34.64089717221388 37.0 33.0 39.0 27.0 39.0 14-15 35.459137256643075 38.0 33.0 40.0 27.0 41.0 16-17 35.35260774342292 37.0 33.0 40.0 27.0 41.0 18-19 35.520616965516744 37.5 33.5 40.0 27.0 41.0 20-21 35.52515419837499 38.0 34.0 40.0 27.0 41.0 22-23 35.47470686794653 38.0 33.5 40.0 27.0 41.0 24-25 35.46652508746861 38.0 33.5 40.0 27.0 41.0 26-27 35.15794039869917 38.0 33.0 40.0 27.0 41.0 28-29 34.898155421640354 37.0 33.0 40.0 26.0 41.0 30-31 34.8500605161755 37.0 33.0 40.0 25.5 41.0 32-33 34.810318038673316 37.0 33.0 40.0 25.5 41.0 34-35 34.57786598184228 37.0 33.0 40.0 25.0 41.0 36-37 34.47578459659843 37.0 32.5 40.0 25.0 41.0 38-39 34.43214109245134 37.0 32.5 40.0 25.0 41.0 40-41 34.35181789268956 37.0 32.0 40.0 24.0 41.0 42-43 34.33930827599143 37.0 32.0 40.0 24.5 41.0 44-45 34.41282826017423 37.0 32.0 40.0 24.5 41.0 46-47 34.2330457561273 37.0 32.0 40.0 24.0 41.0 48-49 34.20830384395144 37.0 32.0 40.0 24.0 41.0 50-51 34.14790719756422 37.0 32.0 40.0 24.0 41.0 52-53 34.2102215730415 37.0 32.0 40.0 24.0 41.0 54-55 34.30230712850664 37.0 32.0 40.0 24.5 41.0 56-57 34.25510883296704 36.5 32.0 39.5 25.0 41.0 58-59 33.97015617923773 36.0 31.0 39.0 24.0 40.0 60-61 33.63133443216344 36.0 31.0 39.0 23.5 40.0 62-63 33.541164196167244 36.0 31.0 39.0 23.5 40.0 64-65 33.38211242258045 35.0 31.0 39.0 23.5 40.0 66-67 33.13145383778553 35.0 31.0 38.5 23.0 40.0 68-69 32.95964241110076 35.0 30.5 38.0 23.0 40.0 70-71 32.95269568356333 35.0 31.0 38.0 24.0 40.0 72-73 32.74214912773547 34.0 30.0 37.5 24.0 40.0 74-75 32.35805694917204 34.0 30.0 37.0 23.0 39.0 76-77 31.444344548499238 33.5 28.5 36.0 22.5 39.0 78-79 31.832761282995264 34.0 30.0 36.0 23.5 39.0 80-81 31.83232543406239 34.0 30.0 36.0 24.0 38.0 82-83 31.853066239428475 34.0 30.0 35.0 25.0 37.0 84-85 31.604286097460367 34.0 30.0 35.0 24.5 37.0 86-87 31.419059709426143 34.0 30.0 35.0 24.0 36.0 88-89 31.385778675919084 34.0 30.0 35.0 25.0 36.0 90-91 31.278454923742032 33.0 30.0 35.0 24.5 36.0 92-93 31.21736483278578 33.0 30.0 35.0 25.0 35.5 94-95 31.406888390559736 33.0 30.0 35.0 25.0 35.0 96-97 31.644963697276367 34.0 30.0 35.0 25.5 35.0 98-99 32.12870679517383 34.0 31.0 35.0 26.5 35.0 100 31.708945417630364 33.0 30.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 1.0 18 11.0 19 125.0 20 1022.0 21 5328.0 22 19115.0 23 51850.0 24 108392.0 25 187535.0 26 281337.0 27 379380.0 28 473510.0 29 557031.0 30 630296.0 31 699519.0 32 764868.0 33 829461.0 34 895665.0 35 950480.0 36 999607.0 37 1019864.0 38 835134.0 39 302468.0 40 8332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.47215912431707 22.949318082639657 15.234154226079694 25.344368566963578 2 14.17745001493256 23.595374247145962 39.45849318573204 22.768682552189446 3 16.622452134852104 28.150682961839475 31.901092090637235 23.32577281267119 4 12.077348825271041 20.609422655392354 39.24308902039844 28.07013949893816 5 12.011836011778813 39.612090723424274 36.23994132992438 12.136131934872536 6 27.57454140194584 40.798454848672264 19.17788589659426 12.449117852787637 7 24.040051870277907 34.045739681442576 24.80772638348407 17.106482064795447 8 23.364944283849777 37.658819727185055 21.751387853923248 17.224848135041917 9 24.47576584409403 16.758310148667572 22.323920143999803 36.44200386323859 10-11 22.967574325753816 27.74934775885065 30.108950329547362 19.174127585848172 12-13 23.64507110788866 25.261184259309307 30.060788618537803 21.03295601426423 14-15 20.965974977929484 26.738213628218226 27.378897389551536 24.916914004300757 16-17 20.488489001985187 29.612170201425904 28.202621364150325 21.696719432438588 18-19 20.6017848428544 29.029907579893617 29.716646916129474 20.65166066112251 20-21 21.32610693147356 28.10149141450039 29.496194309546166 21.076207344479887 22-23 20.996679592342208 28.158770845346986 29.435961926445763 21.408587635865047 24-25 20.939161077763018 28.260783376937926 29.43008300558136 21.36997253971769 26-27 21.088056208647764 28.330400620633476 29.237398970766442 21.344144199952318 28-29 21.012601079665245 28.27363517327695 29.353205067692745 21.360558679365056 30-31 21.280899847008268 28.23247261175494 29.26843886739156 21.21818867384523 32-33 21.155560373023246 28.405188244650613 29.17434513598913 21.26490624633701 34-35 21.207204244219728 28.269741718888753 29.280628031178924 21.242426005712595 36-37 21.151665022941614 28.277895231872947 29.275028590959185 21.295411154226258 38-39 21.17934681716043 28.24997227102618 29.199683882042045 21.370997029771345 40-41 21.384303399578634 28.136774622207604 29.18027808525217 21.29864389296159 42-43 21.104056833408197 28.259090586558788 29.09855296129039 21.538299618742624 44-45 21.218767437978343 28.44623350591909 28.830175295460187 21.504823760642385 46-47 21.163972285889525 28.241891625061715 28.781790724011096 21.812345365037658 48-49 21.151292703372373 28.39906812177882 28.718381853231822 21.731257321616983 50-51 21.01442374181638 28.460729418341806 28.625189226840646 21.899657613001168 52-53 21.00789754090357 28.42700064927786 28.55185354517216 22.013248264646407 54-55 21.051073603186747 28.24670554077923 28.854631862783663 21.847588993250355 56-57 21.116176926341907 28.013463055233423 28.80898227384488 22.061377744579787 58-59 20.85287841875853 27.934511700048443 28.9486023074443 22.26400757374873 60-61 21.047947495621084 28.09673587811031 29.00217936475394 21.85313726151467 62-63 20.72400478799768 28.366605627720677 28.870349081036185 22.03904050324546 64-65 20.47362767285142 28.57001829208709 28.79355791400457 22.162796121056914 66-67 20.612992741336917 29.021406991658587 28.35469081706296 22.010909449941536 68-69 20.63966107825594 29.01382583804018 28.188646932993073 22.157866150710806 70-71 20.742341593992347 28.533178850007378 28.120608476260443 22.60387107973983 72-73 20.93646703212616 28.296317218652494 28.06145789328799 22.705757855933356 74-75 20.976257749567736 28.232504797166936 28.298521730981413 22.492715722283915 76-77 21.23767230320756 28.191251986767725 27.88404346338073 22.687032246643987 78-79 21.392029313630566 28.245747081583144 27.5223306594217 22.839892945364586 80-81 21.353502291994207 28.490572756278077 27.670990026627628 22.484934925100085 82-83 21.29283726114272 28.350398709404306 27.741077600973195 22.615686428479776 84-85 21.336066559359082 28.713408136259076 27.73782948627317 22.212695818108674 86-87 21.534104091617905 28.695406803862806 27.81709264634849 21.953396458170793 88-89 21.448906142341386 28.703597260287395 28.042305139816655 21.805191457554567 90-91 21.249412852453535 28.44026523118488 28.202965493874967 22.107356422486625 92-93 21.24153662047634 28.086969854584332 28.388846156669867 22.282647368269465 94-95 20.624131938132184 28.49984365796726 28.86127007904362 22.014754324856927 96-97 20.594725564038058 28.537461590965375 28.995574283494786 21.872238561501785 98-99 21.79955237592257 30.419069970005154 29.220026896584127 18.561350757488146 100 21.073039745600255 31.449687834921413 22.85260238983039 24.624670029647937 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1569.0 1 1504.5 2 2729.0 3 4200.0 4 5170.0 5 8058.0 6 11069.0 7 13172.0 8 14525.0 9 14383.0 10 13195.5 11 11763.0 12 12081.5 13 14914.5 14 22742.0 15 34828.0 16 45131.5 17 50766.5 18 52899.5 19 53457.0 20 53249.5 21 53538.0 22 55882.0 23 62569.0 24 74557.5 25 91971.5 26 114437.5 27 138719.5 28 162786.0 29 189536.5 30 214389.0 31 235792.0 32 259238.0 33 280388.0 34 301619.5 35 323977.5 36 345312.0 37 364870.5 38 377331.0 39 384213.0 40 391856.5 41 398482.0 42 402428.0 43 406635.0 44 409698.0 45 412756.5 46 414222.0 47 411199.5 48 404553.5 49 391672.0 50 376437.0 51 360138.0 52 339396.0 53 316406.0 54 291836.0 55 265656.0 56 239626.5 57 212875.5 58 186373.0 59 160353.5 60 131684.5 61 104444.5 62 82241.5 63 63502.0 64 47113.0 65 34854.5 66 26206.5 67 20134.0 68 15827.0 69 12066.0 70 9070.0 71 6898.0 72 5156.0 73 3701.5 74 2640.5 75 1900.0 76 1355.5 77 962.5 78 705.5 79 531.0 80 400.0 81 296.5 82 233.0 83 171.0 84 119.0 85 88.0 86 67.0 87 50.0 88 31.0 89 19.5 90 15.0 91 11.0 92 8.0 93 4.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02045932075055108 3 1.5929371144877988 4 0.4211860166242481 5 3.9998672044088137E-5 6 1.6999435618737457E-4 7 0.0 8 0.0 9 0.019849341001878736 10-11 0.12844573560157804 12-13 0.0035148833058742447 14-15 4.999834005511017E-6 16-17 4.499850604959915E-5 18-19 0.06510783841976446 20-21 0.023918333019706296 22-23 6.553426131181381E-4 24-25 1.1513522055978645E-4 26-27 0.003808898157430481 28-29 0.0011341841755512347 30-31 8.24610935738824E-4 32-33 0.0020871523221409707 34-35 0.02573293983737814 36-37 0.0 38-39 3.0625640490608466E-5 40-41 0.0013752130874719166 42-43 8.77925084999932E-5 44-45 5.618095886851549E-4 46-47 0.0013009573997302822 48-49 0.004659174016764882 50-51 0.00703963554618406 52-53 0.004702829840915947 54-55 0.017132255702108867 56-57 0.006415283012470513 58-59 0.007349625236615 60-61 0.008444114209967856 62-63 0.007023181345813407 64-65 0.021126645635080727 66-67 0.0031350279663101776 68-69 0.002485623382916282 70-71 0.001813577869297471 72-73 6.641040868554113E-4 74-75 1.7288132299280462E-4 76-77 7.862093556978044E-5 78-79 0.0 80-81 0.0 82-83 1.2685730994634252E-5 84-85 3.87252049773506E-5 86-87 4.602115553073043E-5 88-89 1.3421935106151734E-5 90-91 2.7501048477473205E-5 92-93 0.0022236260479367186 94-95 7.998888299960638E-5 96-97 1.5889063466821137E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1050.0 20-21 3279.0 22-23 5649.0 24-25 10722.0 26-27 12661.0 28-29 16795.0 30-31 25234.0 32-33 30918.0 34-35 42447.0 36-37 49053.0 38-39 42731.0 40-41 61964.0 42-43 67242.0 44-45 78314.0 46-47 79216.0 48-49 73231.0 50-51 47626.0 52-53 26688.0 54-55 27659.0 56-57 30748.0 58-59 63377.0 60-61 102229.0 62-63 98590.0 64-65 107035.0 66-67 115852.0 68-69 119793.0 70-71 122762.0 72-73 120253.0 74-75 122055.0 76-77 114349.0 78-79 129768.0 80-81 134438.0 82-83 135818.0 84-85 139959.0 86-87 148470.0 88-89 174974.0 90-91 185197.0 92-93 200852.0 94-95 238377.0 96-97 469847.0 98-99 832853.0 100-101 5390257.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.56044308343743 #Duplication Level Percentage of deduplicated Percentage of total 1 92.53309906667272 81.94772253228147 2 5.093621345810365 9.021867265684417 3 1.3033805321346925 3.4628387229652455 4 0.5017892690575956 1.7775472000901948 5 0.22751030537551312 1.0074206725051797 6 0.11694569116199463 0.6214057335603046 7 0.06943125741562452 0.4304204044397536 8 0.04360043536307311 0.3089019099507624 9 0.027521874696520756 0.2193614475849651 >10 0.08163898787921572 1.0730705244353553 >50 0.0011749606178272853 0.071004509061077 >100 2.537408409696396E-4 0.042592975404678365 >500 3.2532973899389234E-5 0.015846102036570185 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.999668011022034E-6 2 0.0 1.9999336022044068E-5 0.0 9.999668011022034E-6 9.999668011022034E-6 3 0.0 1.9999336022044068E-5 0.0 1.9999336022044068E-5 9.999668011022034E-6 4 0.0 7.999734408817627E-5 0.0 4.999834005511017E-5 9.999668011022034E-6 5 0.0 7.999734408817627E-5 0.0 4.999834005511017E-5 9.999668011022034E-6 6 0.0 7.999734408817627E-5 0.0 4.999834005511017E-5 2.9999004033066102E-5 7 0.0 7.999734408817627E-5 0.0 5.9998008066132205E-5 2.9999004033066102E-5 8 0.0 8.999701209919831E-5 0.0 6.999767607715424E-5 2.9999004033066102E-5 9 0.0 1.6999435618737457E-4 0.0 9.999668011022033E-5 4.999834005511017E-5 10-11 0.0 1.6999435618737457E-4 0.0 1.2999568414328645E-4 4.999834005511017E-5 12-13 0.0 1.6999435618737457E-4 0.0 1.449951861598195E-4 4.999834005511017E-5 14-15 0.0 2.299923642535068E-4 0.0 1.799940241983966E-4 9.499684610470932E-5 16-17 0.0 2.299923642535068E-4 0.0 1.9999336022044067E-4 1.0999634812124237E-4 18-19 9.999668011022034E-6 2.649912022920839E-4 0.0 1.9999336022044067E-4 1.2999568414328645E-4 20-21 9.999668011022034E-6 3.04989874336172E-4 0.0 1.9999336022044067E-4 1.2999568414328645E-4 22-23 9.999668011022034E-6 3.4498854638026017E-4 0.0 2.9499020632515E-4 1.499950201653305E-4 24-25 9.999668011022034E-6 4.049865544463924E-4 0.0 4.4998506049599154E-4 1.6999435618737457E-4 26-27 9.999668011022034E-6 4.3498555847945846E-4 9.999668011022034E-6 8.199727769038068E-4 1.6999435618737457E-4 28-29 9.999668011022034E-6 4.4998506049599154E-4 9.999668011022034E-6 0.0037948740101828617 1.7999402419839662E-4 30-31 9.999668011022034E-6 4.699843965180356E-4 9.999668011022034E-6 0.014899505336422831 1.7999402419839662E-4 32-33 9.999668011022034E-6 4.699843965180356E-4 9.999668011022034E-6 0.038088735453982926 1.7999402419839662E-4 34-35 9.999668011022034E-6 5.499817406062118E-4 9.999668011022034E-6 0.06638779592517528 2.049931942259517E-4 36-37 1.9999336022044068E-5 6.299790846943881E-4 9.999668011022034E-6 0.11905104750522283 2.0999302823146272E-4 38-39 1.9999336022044068E-5 6.599780887274543E-4 9.999668011022034E-6 0.28260061765949374 2.1999269624248474E-4 40-41 1.9999336022044068E-5 6.899770927605203E-4 9.999668011022034E-6 0.4655595434231583 2.299923642535068E-4 42-43 1.9999336022044068E-5 7.049765947770534E-4 9.999668011022034E-6 0.5776958204987594 2.299923642535068E-4 44-45 2.9999004033066102E-5 7.599747688376746E-4 9.999668011022034E-6 0.7253259191794832 2.299923642535068E-4 46-47 2.9999004033066102E-5 8.149729428982958E-4 9.999668011022034E-6 0.8789208198287817 2.3499219825901782E-4 48-49 2.9999004033066102E-5 8.199727769038068E-4 9.999668011022034E-6 1.0231010330457029 2.599913682865729E-4 50-51 3.9998672044088137E-5 8.79970784969939E-4 9.999668011022034E-6 1.171721098859518 2.599913682865729E-4 52-53 3.9998672044088137E-5 8.89970452980961E-4 9.999668011022034E-6 1.61887625330839 2.79990704308617E-4 54-55 3.9998672044088137E-5 9.049699549974941E-4 9.999668011022034E-6 2.180527606483465 3.04989874336172E-4 56-57 3.9998672044088137E-5 9.099697890030051E-4 9.999668011022034E-6 2.7854925216482815 3.0998970834168304E-4 58-59 3.9998672044088137E-5 9.099697890030051E-4 9.999668011022034E-6 3.4228013629947487 3.199893763527051E-4 60-61 3.9998672044088137E-5 9.099697890030051E-4 9.999668011022034E-6 3.6299894843491196 3.2998904436372714E-4 62-63 3.9998672044088137E-5 9.349689590305601E-4 9.999668011022034E-6 3.6566685986025265 3.3998871237474914E-4 64-65 3.9998672044088137E-5 0.0010449653071518026 9.999668011022034E-6 3.675237982098994 3.3998871237474914E-4 66-67 3.9998672044088137E-5 0.0010749643111848685 9.999668011022034E-6 3.6823927445608806 3.5498821439128216E-4 68-69 3.9998672044088137E-5 0.0011149629832289567 9.999668011022034E-6 3.689667503038899 3.6998771640781524E-4 70-71 3.9998672044088137E-5 0.0011249626512399788 9.999668011022034E-6 3.6955623073313966 3.7498755041332626E-4 72-73 3.9998672044088137E-5 0.0011299624852454898 9.999668011022034E-6 3.7012071199236187 3.9998672044088134E-4 74-75 3.9998672044088137E-5 0.001144961987262023 9.999668011022034E-6 3.7054669784963137 3.9998672044088134E-4 76-77 3.9998672044088137E-5 0.0011899604933116221 9.999668011022034E-6 3.709381848522629 4.0498655444639236E-4 78-79 3.9998672044088137E-5 0.0012099598293336662 9.999668011022034E-6 3.7116867719991697 4.099863884519034E-4 80-81 3.9998672044088137E-5 0.0012099598293336662 9.999668011022034E-6 3.7126717392982553 4.2998572447394744E-4 82-83 3.9998672044088137E-5 0.001219959497344688 9.999668011022034E-6 3.7134467135691094 4.4998506049599154E-4 84-85 3.9998672044088137E-5 0.001219959497344688 9.999668011022034E-6 3.7137967019494953 4.4998506049599154E-4 86-87 3.9998672044088137E-5 0.0012299591653557101 9.999668011022034E-6 3.7139966953097154 4.4998506049599154E-4 88 3.9998672044088137E-5 0.0012299591653557101 9.999668011022034E-6 3.714016694645738 4.4998506049599154E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9745 0.0 48.289173 1 GTATCAA 17720 0.0 34.085045 1 ATCTCGT 10080 0.0 27.061266 94 ATCAACG 22180 0.0 26.36111 3 TCAACGC 22705 0.0 25.84807 4 CAACGCA 23115 0.0 25.481056 5 TATCAAC 24020 0.0 24.841574 2 AACGCAG 23650 0.0 24.621456 6 TATCTCG 11500 0.0 21.273046 94 ACGCAGA 27865 0.0 20.836607 7 CGCAGAG 27875 0.0 20.541939 8 GTACATG 24410 0.0 20.332489 1 TACATGG 24150 0.0 19.89417 2 ACATGGG 24710 0.0 18.974783 3 GCCGTCT 5990 0.0 18.311768 90-91 AGAGTAC 30035 0.0 17.601757 10-11 GCAGAGT 32180 0.0 17.243942 9 CATGGGG 17535 0.0 16.228895 4 CAGAGTA 32465 0.0 16.171097 9 ATGCCGT 6625 0.0 16.142628 88-89 >>END_MODULE