##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139183_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12527743 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.830176991976927 31.0 30.0 31.0 26.0 34.0 2 30.350295899269327 31.0 30.0 31.0 27.0 34.0 3 30.161860200995502 31.0 30.0 32.0 27.0 34.0 4 34.01136645283991 35.0 35.0 37.0 30.0 37.0 5 33.730390222724075 35.0 33.0 37.0 28.0 37.0 6 33.728362163879 35.0 33.0 37.0 28.0 37.0 7 33.68043126363624 35.0 33.0 37.0 28.0 37.0 8 33.569596055730074 35.0 33.0 37.0 28.0 37.0 9 34.857113368305846 37.0 33.0 39.0 28.0 39.0 10-11 34.869243526148324 37.0 33.0 39.0 28.0 39.0 12-13 34.75113749539722 37.0 33.0 39.0 27.0 39.0 14-15 35.54854669352652 38.0 33.0 40.0 27.0 41.0 16-17 35.43175007660997 38.0 33.0 40.0 27.0 41.0 18-19 35.623619034969025 38.0 33.5 40.0 27.0 41.0 20-21 35.613431378845235 38.0 34.0 40.0 27.0 41.0 22-23 35.52191306977387 38.0 34.0 40.0 27.0 41.0 24-25 35.526964473023455 38.0 34.0 40.0 27.0 41.0 26-27 35.23799258942013 38.0 33.0 40.0 27.0 41.0 28-29 34.96173722889521 37.5 33.0 40.0 26.0 41.0 30-31 34.9274909072763 37.0 33.0 40.0 26.0 41.0 32-33 34.911806951594144 37.0 33.0 40.0 25.5 41.0 34-35 34.668902341274006 37.0 33.0 40.0 25.0 41.0 36-37 34.544770751702664 37.0 33.0 40.0 25.0 41.0 38-39 34.54164378480597 37.0 33.0 40.0 25.0 41.0 40-41 34.487267207951575 37.0 33.0 40.0 25.0 41.0 42-43 34.47787582048865 37.0 33.0 40.0 24.5 41.0 44-45 34.5699929208772 37.0 33.0 40.0 25.0 41.0 46-47 34.374417826642 37.0 32.5 40.0 24.0 41.0 48-49 34.313179944172326 37.0 32.0 40.0 24.0 41.0 50-51 34.24326158083957 37.0 32.0 40.0 24.0 41.0 52-53 34.32041282148447 37.0 32.0 40.0 24.0 41.0 54-55 34.40539630719871 37.0 32.0 40.0 24.5 41.0 56-57 34.35003799994166 37.0 32.0 40.0 25.5 41.0 58-59 34.01306982646777 36.0 31.0 39.0 24.0 41.0 60-61 33.631363838757416 36.0 31.0 39.0 23.0 40.0 62-63 33.54379288112206 36.0 31.0 39.0 23.5 40.0 64-65 33.41678256252301 35.5 31.0 39.0 23.5 40.0 66-67 33.14410667635372 35.0 31.0 38.5 23.0 40.0 68-69 32.980168179982556 35.0 30.5 38.0 23.0 40.0 70-71 33.01040460381175 35.0 31.0 38.0 24.0 40.0 72-73 32.81453883106667 34.5 30.5 37.5 24.0 40.0 74-75 32.42435301981096 34.0 30.0 37.0 23.0 39.0 76-77 31.69702156259632 34.0 29.0 36.0 22.5 39.0 78-79 31.95413055585805 34.0 30.0 36.0 23.5 39.0 80-81 31.936300945002024 34.0 30.0 36.0 24.5 38.5 82-83 31.976066132095962 34.0 30.0 35.5 25.0 37.0 84-85 31.685135526062446 34.0 30.0 35.0 25.0 37.0 86-87 31.492759071885445 34.0 30.0 35.0 24.5 36.5 88-89 31.49809834177435 34.0 30.0 35.0 25.0 36.0 90-91 31.359861099937312 34.0 30.0 35.0 25.0 36.0 92-93 31.268344885639657 34.0 30.0 35.0 25.0 35.5 94-95 31.496904621337475 34.0 30.0 35.0 25.0 35.0 96-97 31.736247285421562 34.0 30.5 35.0 25.5 35.0 98-99 32.24842285813459 34.0 31.0 35.0 26.5 35.0 100 31.89448634308921 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 16.0 19 223.0 20 1409.0 21 7155.0 22 25150.0 23 65793.0 24 135300.0 25 231443.0 26 345010.0 27 463947.0 28 575464.0 29 675531.0 30 768688.0 31 854034.0 32 941151.0 33 1025758.0 34 1109000.0 35 1185990.0 36 1257452.0 37 1307111.0 38 1115111.0 39 426162.0 40 10845.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.90107970765364 23.403864526914386 15.43972445794905 25.25533130748292 2 14.3079649069725 24.041126812061343 39.29532134213785 22.3555869388283 3 16.902773711242112 28.201943633062033 31.77478620406939 23.120496451626472 4 12.220728573616983 21.325217581720302 38.966540652737955 27.487513191924755 5 11.966252151626486 39.58160982370951 36.36346147890137 12.088676545762633 6 27.191582051561227 41.10508482477401 19.321555068173684 12.381778055491075 7 23.748980462720258 34.057861344845705 24.934357683930592 17.258800508503448 8 22.888105223742215 38.025636381589244 21.86903099784215 17.217227396826388 9 24.051547772804806 17.045132123480773 22.569694204040992 36.33362589967343 10-11 22.74930956764967 27.92447459757766 30.2769374465215 19.049278388251174 12-13 23.532895627251023 25.39975925779655 30.11890592610654 20.948439188845892 14-15 20.80137742294751 26.951839088327368 27.52127927278199 24.725504215943136 16-17 20.32407044878569 29.76442117767619 28.346088627804267 21.565419745733845 18-19 20.345708056986936 29.157569131749604 29.943106652428426 20.553616158835034 20-21 21.068609738662918 28.227031454252575 29.735253725295436 20.969105081789074 22-23 20.686577842894764 28.305217289070967 29.765301701898316 21.24290316613596 24-25 20.6860038026471 28.38137899365761 29.74920184092589 21.18341536276941 26-27 20.877881215090106 28.45453965728626 29.537638974468777 21.12994015315486 28-29 20.682531747714535 28.38354699438091 29.69264111109059 21.241280146813963 30-31 21.00688360844877 28.359493143141272 29.584493942823503 21.049129305586455 32-33 20.887023444845227 28.485745296520076 29.542548419087012 21.084682839547686 34-35 20.939111981137135 28.53387942938412 29.609914699684865 20.917093889793883 36-37 20.987319842040893 28.441642728614312 29.428769514214025 21.142267915130766 38-39 20.99163269926059 28.41134719038231 29.456603322455933 21.140416787901167 40-41 21.159965984446515 28.343117782792444 29.418735762920388 21.078180469840653 42-43 21.06178267541999 28.430665174276037 29.226169464541112 21.281382685762857 44-45 21.068895329109765 28.723025214422304 28.947158501181764 21.26092095528617 46-47 21.168994265317174 28.49370431742117 28.757291022340343 21.58001039492131 48-49 21.161507949961013 28.593988371698813 28.76701444214666 21.477489236193513 50-51 21.049121030006393 28.66114310318324 28.702025527825043 21.587710338985325 52-53 21.060177165461898 28.686364520543062 28.68299130075012 21.570467013244922 54-55 21.133358884125137 28.667208447447084 28.68260391889061 21.516828749537172 56-57 21.254264823926544 28.648444033743548 28.59367178609265 21.50361935623726 58-59 21.018208561183474 28.69210367837377 28.797869447511804 21.491818312930953 60-61 21.150479208058904 28.744481424363094 28.601822354852334 21.503217012725667 62-63 21.024019711909357 28.910279314039784 28.549763973316043 21.515937000734812 64-65 20.915076473364856 28.881695465328615 28.65034922559704 21.55287883570949 66-67 20.986533853162623 28.949045990900522 28.470546100314024 21.593874055622823 68-69 20.9583222970367 28.905803465629486 28.516205930324958 21.61966830700886 70-71 21.02541358502919 28.65948499283298 28.590520819283466 21.724580602854367 72-73 21.067998224915215 28.6830328365425 28.53222402767234 21.716744910869952 74-75 20.993762947603354 28.738181842754074 28.600307363795558 21.667747845847014 76-77 21.06350696674136 28.69744021968561 28.542258167260947 21.696794646312078 78-79 21.012552237420497 28.682743717417093 28.501582663937803 21.803121381224617 80-81 21.04420478695286 28.663244793251046 28.522284682916165 21.770265736879924 82-83 21.116619640936662 28.665062354509764 28.59158938458283 21.626728619970752 84-85 21.202159669796686 28.80486518199139 28.538185413336258 21.45478973487566 86-87 21.011631244326313 28.82464417812732 28.573763234730958 21.589961342815407 88-89 21.019310500588833 28.778125520942567 28.597356434951415 21.60520754351719 90-91 20.89169851330408 28.668183937193252 28.801377369933018 21.638740179569655 92-93 20.86838800510892 28.715731310993885 28.878821443620833 21.537059240276356 94-95 20.623649007908824 28.85321023302774 28.996931686330175 21.526209072733266 96-97 20.62419498161797 29.03206382350556 29.05554816322867 21.288193031647793 98-99 21.652911747405383 31.05430155907139 29.1193519797168 18.173434713806426 100 21.03200822471128 31.857652827683232 22.85437259521522 24.25596635239027 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2713.0 1 2492.0 2 3787.5 3 5505.5 4 6723.0 5 10427.0 6 14237.5 7 17134.5 8 19244.0 9 19102.5 10 17250.0 11 15065.0 12 15405.5 13 19649.0 14 31116.5 15 48175.0 16 62224.0 17 69920.0 18 73481.0 19 74921.0 20 75413.5 21 76723.5 22 80347.0 23 89827.0 24 107105.0 25 131429.0 26 161014.5 27 191309.5 28 221323.5 29 254153.0 30 285131.0 31 313794.0 32 344712.0 33 372513.0 34 399272.0 35 425641.0 36 451328.5 37 475705.0 38 490394.0 39 497386.0 40 505270.5 41 511472.0 42 512919.5 43 514838.0 44 516381.5 45 517246.0 46 513104.5 47 505143.0 48 494479.0 49 474049.0 50 453350.0 51 433722.0 52 408472.5 53 379096.0 54 347433.0 55 314328.5 56 281884.0 57 249896.5 58 217770.0 59 186155.5 60 152506.0 61 120948.5 62 95085.5 63 73334.5 64 55281.0 65 41909.5 66 31874.0 67 24391.0 68 18796.0 69 14117.5 70 10697.0 71 8068.0 72 5962.5 73 4485.0 74 3321.5 75 2399.5 76 1727.5 77 1221.0 78 881.0 79 671.5 80 528.5 81 399.5 82 294.5 83 198.0 84 131.5 85 93.5 86 71.5 87 55.0 88 36.5 89 24.5 90 15.5 91 12.0 92 12.5 93 9.0 94 4.5 95 2.0 96 1.0 97 1.5 98 2.0 99 2.0 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.012835512350468876 3 0.9270704228207747 4 0.26626504071802876 5 8.780512180047116E-5 6 2.7937993300149915E-4 7 7.982283800042832E-6 8 0.0 9 0.014439951394277483 10-11 0.07872128283602242 12-13 0.0018718455511100443 14-15 3.991141900021416E-6 16-17 3.192913520017133E-5 18-19 0.03721340707579969 20-21 0.027591750354058205 22-23 4.7122978434208855E-4 24-25 1.1189180062879195E-4 26-27 0.0014842072547010465 28-29 7.651175613147588E-4 30-31 4.976667656247599E-4 32-33 0.0013681726975182634 34-35 0.016987229455557074 36-37 4.0558074234497784E-6 38-39 5.300608734139203E-5 40-41 0.001554864714257096 42-43 7.43496143568114E-5 44-45 6.203334737895993E-4 46-47 0.0015627426031863817 48-49 0.005046868714587964 50-51 0.006301366550663138 52-53 0.006139399386903314 54-55 0.015536049375003275 56-57 0.008504365450570057 58-59 0.00969179732245715 60-61 0.010914415901957056 62-63 0.009185433510464724 64-65 0.025909765667068905 66-67 0.003823703140357355 68-69 0.0027973325157563704 70-71 0.001976551138507574 72-73 6.148226008025484E-4 74-75 9.170707851704249E-5 76-77 3.422197704076894E-5 78-79 0.0 80-81 0.0 82-83 4.084382734640258E-5 84-85 5.1882187174536554E-5 86-87 4.2215398689349074E-5 88-89 1.61324122586329E-5 90-91 5.500675620483086E-5 92-93 0.0023960882759513414 94-95 6.373966772742994E-5 96-97 2.1655594241536873E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1381.0 20-21 4332.0 22-23 7275.0 24-25 12834.0 26-27 15339.0 28-29 20818.0 30-31 31450.0 32-33 39087.0 34-35 53100.0 36-37 63030.0 38-39 71663.0 40-41 80840.0 42-43 91584.0 44-45 105285.0 46-47 105645.0 48-49 97249.0 50-51 85463.0 52-53 79598.0 54-55 85456.0 56-57 96260.0 58-59 108944.0 60-61 111443.0 62-63 112697.0 64-65 122123.0 66-67 131140.0 68-69 134994.0 70-71 135392.0 72-73 131482.0 74-75 133363.0 76-77 128790.0 78-79 146643.0 80-81 151040.0 82-83 155876.0 84-85 160426.0 86-87 169339.0 88-89 204272.0 90-91 216880.0 92-93 231076.0 94-95 281526.0 96-97 556901.0 98-99 1017777.0 100-101 6837930.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.94451106092613 #Duplication Level Percentage of deduplicated Percentage of total 1 92.43721582795659 81.29345749822944 2 4.941055139930325 8.690773568124968 3 1.3764268599152416 3.6314756161911537 4 0.5453786831590305 1.9185224653389072 5 0.2855037082640519 1.255424201468167 6 0.14691869043448885 0.7752415437583612 7 0.08758973005040832 0.5392125188269168 8 0.0463782588878483 0.32629706413990966 9 0.034603680502599064 0.273888338643862 >10 0.0980394359256603 1.231643136255499 >50 7.424860295958915E-4 0.039252868132985744 >100 1.4749894418011222E-4 0.024811180889813773 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 7.982283800042832E-6 0.0 0.0 7.982283800042832E-6 2 0.0 1.5964567600085664E-5 0.0 1.5964567600085664E-5 7.982283800042832E-6 3 0.0 1.5964567600085664E-5 0.0 3.991141900021417E-5 7.982283800042832E-6 4 0.0 2.39468514001285E-5 0.0 4.7893702800257E-5 7.982283800042832E-6 5 0.0 4.7893702800257E-5 0.0 5.587598660029983E-5 7.982283800042832E-6 6 0.0 4.7893702800257E-5 0.0 5.587598660029983E-5 7.982283800042832E-6 7 0.0 5.587598660029983E-5 0.0 5.587598660029983E-5 7.982283800042832E-6 8 0.0 7.18405542003855E-5 0.0 5.587598660029983E-5 7.982283800042832E-6 9 0.0 1.1973425700064249E-4 0.0 6.385827040034266E-5 7.982283800042832E-6 10-11 0.0 1.1973425700064249E-4 0.0 8.780512180047117E-5 7.982283800042832E-6 12-13 0.0 1.1973425700064249E-4 0.0 9.97785475005354E-5 7.982283800042832E-6 14-15 0.0 1.7161910170092093E-4 0.0 1.1973425700064249E-4 7.982283800042832E-6 16-17 0.0 1.8359252740098516E-4 0.0 1.3968996650074957E-4 1.5964567600085664E-5 18-19 3.991141900021416E-6 2.2749508830122075E-4 0.0 1.5964567600085667E-4 1.9955709500107084E-5 20-21 7.982283800042832E-6 2.8337107490152057E-4 0.0 1.7561024360094232E-4 2.39468514001285E-5 22-23 7.982283800042832E-6 3.1929135200171334E-4 0.0 2.514419397013492E-4 2.39468514001285E-5 24-25 7.982283800042832E-6 3.5122048720188465E-4 0.0 3.153002101016919E-4 2.39468514001285E-5 26-27 7.982283800042832E-6 3.592027710019275E-4 0.0 5.148573051027628E-4 2.39468514001285E-5 28-29 7.982283800042832E-6 3.592027710019275E-4 0.0 0.0015525541991083312 2.39468514001285E-5 30-31 7.982283800042832E-6 3.951230481021202E-4 0.0 0.005427952984029126 2.39468514001285E-5 32-33 7.982283800042832E-6 4.0709647380218446E-4 0.0 0.01406079291377545 2.39468514001285E-5 34-35 7.982283800042832E-6 4.509990347024201E-4 0.0 0.024609380955532056 2.39468514001285E-5 36-37 7.982283800042832E-6 4.949015956026557E-4 0.0 0.04515977059874233 2.39468514001285E-5 38-39 7.982283800042832E-6 4.988927375026771E-4 0.0 0.09344460530520142 2.39468514001285E-5 40-41 7.982283800042832E-6 5.268307308028269E-4 0.0 0.14757247175329186 2.39468514001285E-5 42-43 7.982283800042832E-6 5.348130146028698E-4 0.0 0.1868453080495026 2.39468514001285E-5 44-45 7.982283800042832E-6 5.667421498030411E-4 0.0 0.23819933087707817 2.39468514001285E-5 46-47 7.982283800042832E-6 5.906890012031697E-4 0.0 0.2913693232691635 2.39468514001285E-5 48-49 7.982283800042832E-6 5.906890012031697E-4 0.0 0.33903553098111927 2.39468514001285E-5 50-51 7.982283800042832E-6 6.026624269032339E-4 0.0 0.38431104469496224 2.39468514001285E-5 52-53 7.982283800042832E-6 6.186269945033196E-4 0.0 0.47511750520424945 2.39468514001285E-5 54-55 1.1973425700064248E-5 6.824852649036622E-4 0.0 0.5804277753782145 2.39468514001285E-5 56-57 1.5964567600085664E-5 7.024409744037693E-4 0.0 0.6846883752324741 2.39468514001285E-5 58-59 1.5964567600085664E-5 7.104232582038121E-4 0.0 0.7708730934215364 2.39468514001285E-5 60-61 1.5964567600085664E-5 7.223966839038764E-4 0.0 0.8097308509601451 2.39468514001285E-5 62-63 1.5964567600085664E-5 7.423523934039835E-4 0.0 0.8594085941897116 2.39468514001285E-5 64-65 1.5964567600085664E-5 8.461220828045403E-4 0.0 0.8785501107422143 2.39468514001285E-5 66-67 1.5964567600085664E-5 8.700689342046688E-4 0.0 0.8861133246427548 2.39468514001285E-5 68-69 1.5964567600085664E-5 8.980069275048187E-4 0.0 0.8938721044963965 2.39468514001285E-5 70-71 1.5964567600085664E-5 9.2993606270499E-4 0.0 0.9001302149956301 2.39468514001285E-5 72-73 1.5964567600085664E-5 9.339272046050114E-4 0.0 0.9052029563505573 2.39468514001285E-5 74-75 1.5964567600085664E-5 9.419094884050542E-4 0.0 0.9095972035824809 2.39468514001285E-5 76-77 1.5964567600085664E-5 9.698474817052042E-4 0.0 0.9136881240300029 2.39468514001285E-5 78-79 1.5964567600085664E-5 9.898031912053114E-4 0.0 0.9160947825957158 2.39468514001285E-5 80-81 1.5964567600085664E-5 0.0010017766169053755 0.0 0.91688103755002 2.39468514001285E-5 82-83 1.5964567600085664E-5 0.0010057677588053968 0.0 0.9178189558965251 2.39468514001285E-5 84-85 1.5964567600085664E-5 0.0010097589007054182 0.0 0.9183058752083276 2.39468514001285E-5 86-87 1.5964567600085664E-5 0.0010217323264054825 0.0 0.9184735031681286 2.39468514001285E-5 88 1.5964567600085664E-5 0.001045679177805611 0.0 0.9184814854519285 2.39468514001285E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13525 0.0 46.346893 1 GTATCAA 23290 0.0 34.256634 1 ATCAACG 29930 0.0 25.79476 3 TCAACGC 30505 0.0 25.26711 4 CAACGCA 30840 0.0 25.00582 5 TATCAAC 32390 0.0 24.475393 2 AACGCAG 31840 0.0 23.905575 6 ACGCAGA 36670 0.0 20.688301 7 CGCAGAG 37055 0.0 20.22464 8 AGAGTAC 39780 0.0 17.615133 10-11 GTACATG 29255 0.0 17.332434 1 GCAGAGT 42840 0.0 16.985083 9 CAGAGTA 42810 0.0 16.615358 9 TACATGG 29225 0.0 16.495749 2 ACATGGG 29050 0.0 16.158417 3 GAGTACT 27610 0.0 16.066494 12-13 AGTACTT 31410 0.0 15.441773 12-13 GTGGTAT 6520 0.0 14.4114685 1 CATGGGG 20490 0.0 13.917079 4 GTACTTT 32570 0.0 13.7806425 14-15 >>END_MODULE