##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139182_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11587102 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.863019588504528 31.0 30.0 31.0 26.0 34.0 2 30.37118565107997 31.0 30.0 31.0 27.0 34.0 3 30.125689926609777 31.0 30.0 32.0 26.0 34.0 4 33.98658586072687 35.0 35.0 37.0 30.0 37.0 5 33.715050406909334 35.0 33.0 37.0 28.0 37.0 6 33.71127664190753 35.0 33.0 37.0 28.0 37.0 7 33.66884195892985 35.0 33.0 37.0 28.0 37.0 8 33.54937170657512 35.0 33.0 37.0 28.0 37.0 9 34.83305221616242 37.0 33.0 39.0 28.0 39.0 10-11 34.86345960361788 37.0 33.0 39.0 28.0 39.0 12-13 34.7587086054822 37.0 33.0 39.0 27.0 39.0 14-15 35.54402813576682 38.0 33.0 40.0 27.0 41.0 16-17 35.4367415597101 38.0 33.0 40.0 27.0 41.0 18-19 35.63497102208991 38.0 33.5 40.0 27.0 41.0 20-21 35.61541774751193 38.0 34.0 40.0 27.0 41.0 22-23 35.54688621128123 38.0 34.0 40.0 27.0 41.0 24-25 35.53435330345201 38.0 34.0 40.0 27.0 41.0 26-27 35.25294887125921 38.0 33.0 40.0 27.0 41.0 28-29 34.98199445011264 37.5 33.0 40.0 26.0 41.0 30-31 34.97411495198517 37.0 33.0 40.0 26.0 41.0 32-33 34.93726081509328 37.0 33.0 40.0 25.5 41.0 34-35 34.71830497127553 37.0 33.0 40.0 25.0 41.0 36-37 34.57562851329076 37.0 33.0 40.0 25.0 41.0 38-39 34.5655423369917 37.0 33.0 40.0 25.0 41.0 40-41 34.51308184209036 37.0 33.0 40.0 25.0 41.0 42-43 34.51129409692777 37.0 33.0 40.0 25.0 41.0 44-45 34.60459053565901 37.0 33.0 40.0 25.0 41.0 46-47 34.412675251909064 37.0 32.5 40.0 24.0 41.0 48-49 34.36770994131375 37.0 32.0 40.0 24.0 41.0 50-51 34.30670792788341 37.0 32.0 40.0 24.0 41.0 52-53 34.36823677135834 37.0 32.0 40.0 24.0 41.0 54-55 34.4736821716494 37.0 32.0 40.0 25.0 41.0 56-57 34.43192131084409 37.0 32.0 40.0 25.5 41.0 58-59 34.115531949825666 36.0 31.5 39.0 24.5 41.0 60-61 33.75336006378197 36.0 31.0 39.0 23.5 40.5 62-63 33.686994371375334 36.0 31.0 39.0 23.5 40.0 64-65 33.550745353149544 35.5 31.0 39.0 24.0 40.0 66-67 33.30291839964498 35.0 31.0 39.0 23.0 40.0 68-69 33.13349151269962 35.0 31.0 38.0 23.5 40.0 70-71 33.120624289804766 35.0 31.0 38.0 24.5 40.0 72-73 32.91469119010145 35.0 31.0 37.5 24.5 40.0 74-75 32.52739501012086 34.0 30.0 37.0 23.5 39.5 76-77 31.780731171285424 34.0 29.5 36.0 22.5 39.0 78-79 32.05562575082266 34.0 30.0 36.0 24.0 39.0 80-81 32.039251066996805 34.0 30.0 36.0 24.5 38.5 82-83 32.08823977738891 34.0 30.0 35.5 25.0 37.0 84-85 31.78220333058193 34.0 30.0 35.0 25.0 37.0 86-87 31.61436600243711 34.0 30.0 35.0 25.0 36.5 88-89 31.59989600393031 34.0 30.0 35.0 25.0 36.0 90-91 31.452528034498293 34.0 30.0 35.0 25.0 36.0 92-93 31.366292593094308 34.0 30.0 35.0 25.0 36.0 94-95 31.56263090636201 34.0 30.0 35.0 25.0 35.0 96-97 31.784739989956226 34.0 30.5 35.0 25.5 35.0 98-99 32.262807760776134 34.0 31.0 35.0 26.5 35.0 100 31.895168794744766 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 29.0 19 185.0 20 1323.0 21 6252.0 22 21978.0 23 58169.0 24 119533.0 25 206278.0 26 309917.0 27 416437.0 28 522141.0 29 619466.0 30 707392.0 31 788648.0 32 871668.0 33 950146.0 34 1029319.0 35 1100746.0 36 1169504.0 37 1214748.0 38 1050543.0 39 411374.0 40 11300.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.0324436602008 23.39721355693598 15.392347456680714 25.177995326182508 2 14.24188939970449 24.041720117589442 39.36882077553857 22.34756970716749 3 16.77306122156918 28.313883876397146 31.788363101556822 23.124691800476853 4 12.172977330156224 21.140423324730946 39.242469347231044 27.444129997881795 5 11.893226087631934 39.64020332956478 36.46562125121903 12.000949331584263 6 27.239867787213672 41.18830121033955 19.327027976593584 12.244803025853194 7 23.742539225298888 34.100634835236185 25.11624780003212 17.040578139432803 8 22.84030122458575 38.1308372015712 21.93087624498343 17.097985328859625 9 24.065257003073732 17.09414627367338 22.594320201428193 36.2462765218247 10-11 22.671204702068547 28.05163761620286 30.354371546134495 18.922786135594095 12-13 23.437918712266 25.507878964672496 30.2593712794617 20.7948310435998 14-15 20.67990339603466 27.077646334691796 27.649769545482556 24.592680723790988 16-17 20.235448051516258 29.87563885163841 28.49665699340892 21.392256103436413 18-19 20.30996115232531 29.3318636842322 29.9251124793568 20.43306268408568 20-21 21.048354695872774 28.366482657165292 29.79908376141224 20.786078885549696 22-23 20.71415461878678 28.41874471844113 29.723578217196568 21.143522445575524 24-25 20.635039536720406 28.4946696426018 29.748296574348227 21.121994246329567 26-27 20.80368648927282 28.62330936446461 29.5213505710841 21.05165357517847 28-29 20.758962609750064 28.5630598992689 29.646915515885592 21.03106197509545 30-31 21.11504831506476 28.57405214395633 29.462022387265357 20.848877153713552 32-33 20.94184021265676 28.61207697696043 29.479931959786636 20.96615085059617 34-35 20.916625782853554 28.62903033982643 29.536701181901176 20.917642695418845 36-37 20.976532986673966 28.558929316311538 29.447645767803564 21.01689192921093 38-39 20.952667992480364 28.62230785669167 29.408149411476366 21.0168747393516 40-41 21.117588112066493 28.582127415850017 29.310975333428345 20.98930913865514 42-43 21.007910165199295 28.69091795019658 29.18027085442748 21.120901030176643 44-45 21.107276107375736 28.861487160571592 28.89129031190659 21.13994642014608 46-47 21.088427632893893 28.741794876965315 28.724083595971766 21.44569389416902 48-49 21.122525666670004 28.844060088487794 28.74097349069193 21.29244075415027 50-51 21.06395602051737 28.930600446485577 28.65113330927272 21.35431022372434 52-53 21.13716026214207 28.926675158740373 28.584080829288478 21.352083749829077 54-55 21.147199812600494 28.860004416331375 28.63508259175965 21.357713179308472 56-57 21.257344045953957 28.90768502962352 28.561749917024088 21.273221007398433 58-59 21.08647248046071 28.96106515824718 28.702112212270702 21.250350149021404 60-61 21.19941969592047 28.904832606739618 28.57773800343648 21.318009693903434 62-63 21.1511155539903 29.03164145310926 28.519520600691216 21.297722392209224 64-65 21.04142712857913 28.995986045964052 28.678637064943274 21.283949760513547 66-67 21.11721673397685 28.995554882052836 28.550832617736692 21.336395766233622 68-69 21.046626415120365 28.93280458425009 28.652480953135846 21.3680880474937 70-71 21.10530254045223 28.74846083260888 28.752193703442767 21.39404292349612 72-73 21.13394528135458 28.80987297169491 28.70126341988804 21.354918327062464 74-75 20.982378342287024 28.910689637689437 28.728409516704968 21.378522503318575 76-77 21.03569437230587 28.89462336144565 28.71510827878217 21.35457398746631 78-79 20.990238598354864 28.856492658852908 28.700198732923653 21.45307000986858 80-81 21.045037525150057 28.85814990085783 28.71518937870358 21.381623195288533 82-83 21.087564304657093 28.84476122822925 28.806020935007354 21.261653532106305 84-85 21.098982303386666 28.93959970599876 28.76663651269294 21.194781477921637 86-87 20.967464395362637 28.94301699976733 28.78229688165026 21.307221723219776 88-89 21.04110961959873 28.904262128438546 28.71772934873399 21.336898903228732 90-91 20.9506806318541 28.961451359643238 28.826889150201485 21.260978858301176 92-93 20.924353928375606 28.945738460122943 28.871413469328406 21.258494142173046 94-95 20.725985589054357 29.088420045692626 28.889204683251425 21.296389682001596 96-97 20.68697555385866 29.24846992730866 28.99781261547757 21.066741903355112 98-99 21.715691756102114 31.21275534946889 29.112287424844386 17.959265469584608 100 20.95055212641244 32.14703488842462 22.94025359266856 23.96215939249438 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1709.0 1 1594.0 2 2926.5 3 4583.0 4 5678.5 5 8789.0 6 12036.5 7 14491.5 8 16149.5 9 16116.0 10 14662.5 11 12814.5 12 13184.5 13 16860.5 14 26885.5 15 41760.5 16 54210.5 17 61251.0 18 64133.5 19 65201.0 20 66094.0 21 67838.0 22 72285.5 23 82315.0 24 99507.5 25 124397.0 26 154254.5 27 183867.0 28 213427.5 29 245542.5 30 275566.5 31 304374.0 32 335179.0 33 362891.0 34 388367.0 35 411138.5 36 432378.0 37 452671.5 38 465162.0 39 471837.0 40 478303.5 41 481500.0 42 481669.0 43 481921.0 44 480949.0 45 479157.0 46 473232.0 47 464052.5 48 452974.5 49 434718.5 50 415174.5 51 395067.0 52 369394.5 53 340101.5 54 310552.5 55 282165.0 56 253859.0 57 225680.0 58 196972.0 59 168468.0 60 139316.5 61 111142.0 62 87622.0 63 67769.5 64 50795.5 65 37719.5 66 27847.5 67 21122.0 68 16365.0 69 12215.5 70 9015.5 71 6755.0 72 5073.0 73 3739.5 74 2700.5 75 1909.5 76 1326.5 77 970.5 78 728.5 79 562.0 80 427.5 81 314.0 82 237.5 83 157.5 84 112.0 85 89.0 86 69.0 87 50.5 88 29.0 89 16.0 90 10.5 91 10.0 92 9.0 93 5.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.014740527873147228 3 1.099489760252391 4 0.3010502539806761 5 1.7260571280031884E-5 6 1.9849656972036666E-4 7 8.630285640015942E-6 8 0.0 9 0.015810683292509203 10-11 0.09130842207136866 12-13 0.0020453776966837785 14-15 0.0 16-17 2.1575714100039855E-5 18-19 0.04486885504244288 20-21 0.02416863457615789 22-23 5.655793583394245E-4 24-25 1.425585290240741E-4 26-27 0.0014659599557686584 28-29 8.399527963847046E-4 30-31 6.462844736921664E-4 32-33 0.0014003427186592753 34-35 0.019147458953725768 36-37 4.383506111418468E-6 38-39 1.7635579358101065E-5 40-41 0.0015445968382546572 42-43 1.1622721454864323E-4 44-45 5.499870617797762E-4 46-47 0.0013018145519652735 48-49 0.004956989274480992 50-51 0.006386300060910843 52-53 0.005640190869292665 54-55 0.015447703233315504 56-57 0.007733356162429015 58-59 0.00919394423618234 60-61 0.010178800311159664 62-63 0.008641939341433215 64-65 0.02373357655334747 66-67 0.0035778551810499953 68-69 0.002636981824197087 70-71 0.0019819251506969114 72-73 6.603150940439475E-4 74-75 1.210917250864042E-4 76-77 4.7988682349154774E-5 78-79 0.0 80-81 5.48140463624878E-6 82-83 3.895732608934841E-5 84-85 6.784639485742418E-5 86-87 5.1743169901573E-5 88-89 3.514953314390078E-5 90-91 1.7971977373999365E-5 92-93 0.002301695434995272 94-95 6.30747330251544E-5 96-97 1.2437604140386774E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1117.0 20-21 3578.0 22-23 6001.0 24-25 10923.0 26-27 13011.0 28-29 18159.0 30-31 28946.0 32-33 35528.0 34-35 49571.0 36-37 61286.0 38-39 74857.0 40-41 77936.0 42-43 89730.0 44-45 104803.0 46-47 103469.0 48-49 96730.0 50-51 89516.0 52-53 88536.0 54-55 95157.0 56-57 103115.0 58-59 107063.0 60-61 107866.0 62-63 104256.0 64-65 109011.0 66-67 117310.0 68-69 120830.0 70-71 122746.0 72-73 119212.0 74-75 121278.0 76-77 117557.0 78-79 132805.0 80-81 136151.0 82-83 140378.0 84-85 144980.0 86-87 154510.0 88-89 185795.0 90-91 195964.0 92-93 211002.0 94-95 256193.0 96-97 508470.0 98-99 917946.0 100-101 6303810.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.67881583571362 #Duplication Level Percentage of deduplicated Percentage of total 1 92.92892970424631 83.33756372757082 2 4.97026913324094 8.914557005076924 3 1.2105111082319637 3.2567160822665966 4 0.4324508124338335 1.5512670706503398 5 0.1974692806246942 0.8854405625176403 6 0.0981373274540361 0.5280503589215775 7 0.052185554067359585 0.3275957084743991 8 0.034775378170971705 0.24948917876894938 9 0.019045034971316734 0.1537142565399695 >10 0.05560734317577971 0.7452247581757891 >50 5.486342842682406E-4 0.031509297053958406 >100 5.7431584179459993E-5 0.012416168248671134 >500 1.325751429742916E-5 0.0064558257343334 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.5890856920047827E-5 0.0 8.630285640015942E-6 0.0 3 0.0 2.5890856920047827E-5 0.0 8.630285640015942E-6 0.0 4 0.0 6.041199948011159E-5 0.0 8.630285640015942E-6 0.0 5 0.0 6.904228512012753E-5 0.0 1.7260571280031884E-5 0.0 6 0.0 6.904228512012753E-5 0.0 1.7260571280031884E-5 0.0 7 0.0 7.767257076014348E-5 0.0 2.5890856920047827E-5 0.0 8 0.0 8.630285640015942E-5 0.0 2.5890856920047827E-5 8.630285640015942E-6 9 0.0 1.46714855880271E-4 0.0 4.315142820007971E-5 1.7260571280031884E-5 10-11 0.0 1.5102999870027898E-4 0.0 6.041199948011159E-5 1.7260571280031884E-5 12-13 0.0 1.5534514152028696E-4 0.0 8.630285640015942E-5 1.7260571280031884E-5 14-15 0.0 1.8123599844033477E-4 0.0 9.493314204017536E-5 3.0205999740055795E-5 16-17 0.0 1.8986628408035073E-4 0.0 9.493314204017536E-5 3.452114256006377E-5 18-19 0.0 2.243874266404145E-4 0.0 9.924828486018334E-5 3.452114256006377E-5 20-21 0.0 2.4164799792044636E-4 0.0 1.1219371332020724E-4 3.452114256006377E-5 22-23 0.0 2.8048428330051814E-4 0.0 1.1219371332020724E-4 3.452114256006377E-5 24-25 0.0 3.02059997400558E-4 0.0 1.4239971306026305E-4 4.315142820007971E-5 26-27 0.0 3.236357115005978E-4 0.0 1.7692085562032682E-4 4.315142820007971E-5 28-29 0.0 3.2795085432060577E-4 0.0 4.056234250807493E-4 4.746657102008768E-5 30-31 0.0 3.5384171124065364E-4 0.0 0.0011909794183222 5.1781713840095654E-5 32-33 0.0 3.6247199688066954E-4 0.0 0.0028221034042852132 5.1781713840095654E-5 34-35 0.0 4.3582942482080504E-4 0.0 0.005018511099669271 5.1781713840095654E-5 36-37 0.0 5.091868527609405E-4 0.0 0.008949606208696531 5.1781713840095654E-5 38-39 4.315142820007971E-6 5.135019955809486E-4 0.0 0.01567259872226895 5.1781713840095654E-5 40-41 8.630285640015942E-6 5.350777096809884E-4 0.0 0.02324998951420295 5.1781713840095654E-5 42-43 8.630285640015942E-6 5.566534237810283E-4 0.0 0.030279357167995933 5.1781713840095654E-5 44-45 8.630285640015942E-6 6.213805660811478E-4 0.0 0.038327098527310796 5.1781713840095654E-5 46-47 8.630285640015942E-6 6.645319942812276E-4 0.0 0.046586281884806055 5.1781713840095654E-5 48-49 8.630285640015942E-6 6.645319942812276E-4 0.0 0.05450456895952068 5.1781713840095654E-5 50-51 8.630285640015942E-6 7.076834224813073E-4 0.0 0.06181873603943419 5.1781713840095654E-5 52-53 8.630285640015942E-6 7.076834224813073E-4 0.0 0.07104882653143124 5.1781713840095654E-5 54-55 8.630285640015942E-6 7.163137081213232E-4 0.0 0.07992939045500765 5.1781713840095654E-5 56-57 8.630285640015942E-6 7.249439937613391E-4 0.0 0.0888919420921642 6.041199948011159E-5 58-59 8.630285640015942E-6 7.46519707861379E-4 0.0 0.096905162308919 6.904228512012753E-5 60-61 8.630285640015942E-6 7.55149993501395E-4 4.315142820007971E-6 0.10474146167005348 6.904228512012753E-5 62-63 8.630285640015942E-6 7.594651363214029E-4 8.630285640015942E-6 0.11296612388498867 6.904228512012753E-5 64-65 8.630285640015942E-6 7.853559932414507E-4 8.630285640015942E-6 0.12031481210746225 6.904228512012753E-5 66-67 8.630285640015942E-6 7.896711360614587E-4 8.630285640015942E-6 0.12633012119855336 6.904228512012753E-5 68-69 8.630285640015942E-6 8.155619929815065E-4 8.630285640015942E-6 0.13271653257216515 6.904228512012753E-5 70-71 8.630285640015942E-6 8.371377070815464E-4 8.630285640015942E-6 0.13767894681517434 6.904228512012753E-5 72-73 8.630285640015942E-6 8.457679927215623E-4 8.630285640015942E-6 0.14201998049210235 6.904228512012753E-5 74-75 8.630285640015942E-6 8.500831355415703E-4 8.630285640015942E-6 0.14585182731626942 6.904228512012753E-5 76-77 8.630285640015942E-6 8.630285640015942E-4 8.630285640015942E-6 0.14923489928715566 6.904228512012753E-5 78-79 8.630285640015942E-6 8.716588496416101E-4 8.630285640015942E-6 0.15099547755771892 6.904228512012753E-5 80-81 8.630285640015942E-6 8.75973992461618E-4 8.630285640015942E-6 0.15178083355096036 7.33574279401355E-5 82-83 8.630285640015942E-6 8.802891352816261E-4 8.630285640015942E-6 0.15263091668650192 7.767257076014348E-5 84-85 8.630285640015942E-6 8.84604278101634E-4 8.630285640015942E-6 0.15299770382620262 7.767257076014348E-5 86-87 8.630285640015942E-6 8.88919420921642E-4 8.630285640015942E-6 0.15312715811080285 8.198771358015146E-5 88 8.630285640015942E-6 9.407011347617376E-4 8.630285640015942E-6 0.15313578839644287 8.630285640015942E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11725 0.0 46.309956 1 GTATCAA 20525 0.0 33.310368 1 ATCAACG 25335 0.0 26.035166 3 TCAACGC 25545 0.0 25.834513 4 CAACGCA 25825 0.0 25.472225 5 TATCAAC 27375 0.0 24.60471 2 AACGCAG 26720 0.0 24.44803 6 ACGCAGA 30805 0.0 21.138176 7 CGCAGAG 31155 0.0 20.646147 8 AGAGTAC 33370 0.0 17.246943 10-11 GTACATG 25360 0.0 17.21215 1 GCAGAGT 36190 0.0 17.173952 9 TACATGG 24870 0.0 16.735723 2 GAGTACT 23515 0.0 16.145012 12-13 ACATGGG 25225 0.0 16.047695 3 CAGAGTA 36535 0.0 15.629356 9 AGTACTT 26490 0.0 14.851262 12-13 GTGGTAT 5620 0.0 14.13532 1 CATGGGG 16695 0.0 13.894106 4 GTACTTT 27965 0.0 13.843794 14-15 >>END_MODULE