##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139179_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5062889 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.300557843555328 18.0 18.0 30.0 18.0 33.0 2 28.678113424963495 29.0 27.0 32.0 25.0 33.0 3 30.639201056945947 31.0 29.0 33.0 27.0 33.0 4 31.46434910976717 33.0 31.0 33.0 29.0 33.0 5 32.65700255328529 33.0 33.0 33.0 32.0 34.0 6 36.68942554340022 38.0 37.0 38.0 34.0 38.0 7 37.058486172618046 38.0 38.0 38.0 35.0 38.0 8 37.25054983429421 38.0 38.0 38.0 36.0 38.0 9 37.405599451222415 38.0 38.0 38.0 37.0 38.0 10-11 37.44819331413349 38.0 38.0 38.0 37.0 38.0 12-13 37.491380316653206 38.0 38.0 38.0 37.0 38.0 14-15 37.49298868689399 38.0 38.0 38.0 37.0 38.0 16-17 37.51549668578552 38.0 38.0 38.0 37.0 38.0 18-19 37.51287229484984 38.0 38.0 38.0 37.0 38.0 20-21 37.51390412516085 38.0 38.0 38.0 37.0 38.0 22-23 37.52217041795579 38.0 38.0 38.0 37.5 38.0 24-25 37.52982412840244 38.0 38.0 38.0 38.0 38.0 26-27 37.49283728012571 38.0 38.0 38.0 37.0 38.0 28-29 37.46834342426376 38.0 38.0 38.0 37.0 38.0 30-31 37.465867904508926 38.0 38.0 38.0 37.0 38.0 32-33 37.454117355302785 38.0 38.0 38.0 37.0 38.0 34-35 37.42224005875288 38.0 38.0 38.0 37.0 38.0 36-37 37.39512259708631 38.0 38.0 38.0 37.0 38.0 38-39 37.3801776342269 38.0 38.0 38.0 37.0 38.0 40-41 37.37677468611325 38.0 38.0 38.0 37.0 38.0 42-43 37.335587822384355 38.0 38.0 38.0 37.0 38.0 44-45 37.289964293737384 38.0 38.0 38.0 37.0 38.0 46-47 37.25503042167246 38.0 38.0 38.0 37.0 38.0 48-49 37.20910351129049 38.0 38.0 38.0 37.0 38.0 50-51 37.1728479329908 38.0 38.0 38.0 37.0 38.0 52-53 37.132622681663356 38.0 38.0 38.0 36.5 38.0 54-55 37.11560522004794 38.0 38.0 38.0 36.0 38.0 56-57 37.07063158816203 38.0 38.0 38.0 36.0 38.0 58-59 37.03869436480882 38.0 38.0 38.0 36.0 38.0 60-61 37.0628382756958 38.0 38.0 38.0 36.0 38.0 62-63 37.076076889189 38.0 38.0 38.0 36.0 38.0 64-65 37.0838501459089 38.0 38.0 38.0 36.0 38.0 66-67 37.072551863164776 38.0 38.0 38.0 36.0 38.0 68-69 37.034803648314366 38.0 38.0 38.0 36.0 38.0 70-71 37.03047419319594 38.0 38.0 38.0 36.0 38.0 72-73 37.04126335005253 38.0 38.0 38.0 36.0 38.0 74-75 37.0551331558959 38.0 38.0 38.0 36.0 38.0 76-77 37.03935603558392 38.0 38.0 38.0 36.0 38.0 78-79 36.996211965570296 38.0 38.0 38.0 36.0 38.0 80-81 36.94515604373374 38.0 38.0 38.0 36.0 38.0 82-83 36.90053439488676 38.0 38.0 38.0 35.5 38.0 84-85 36.87553295950032 38.0 38.0 38.0 35.0 38.0 86-87 36.89687781865254 38.0 38.0 38.0 35.0 38.0 88-89 36.85438900914677 38.0 38.0 38.0 35.0 38.0 90-91 36.86878775846903 38.0 38.0 38.0 35.0 38.0 92-93 36.85447055681644 38.0 38.0 38.0 35.0 38.0 94-95 36.86896605683749 38.0 38.0 38.0 35.0 38.0 96-97 36.860454873166574 38.0 38.0 38.0 35.0 38.0 98-99 36.8407079678167 38.0 38.0 38.0 35.0 38.0 100 35.19819573998513 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 10.0 20 20.0 21 71.0 22 239.0 23 752.0 24 1909.0 25 4069.0 26 7406.0 27 12876.0 28 20325.0 29 29728.0 30 39048.0 31 50078.0 32 64924.0 33 87742.0 34 135540.0 35 262342.0 36 943846.0 37 3401961.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.14750609780305 27.641076073364435 13.607527243832523 21.603890584999988 2 13.823455048966741 21.698310361038356 42.45679114766662 22.02144344232828 3 17.24561840815693 28.044064195796626 31.35391553355142 23.356401862495026 4 11.99017074780257 18.884137719350395 40.45401727526034 28.671674257586687 5 12.564980192139311 38.331711400348695 36.14924206317776 12.954066344334233 6 27.79889110742898 39.71325462596553 19.779023399485947 12.708830867119545 7 24.888497456689255 33.55110096231618 24.769138726920538 16.791262854074027 8 23.182811236825458 37.85297287773838 22.118399198560347 16.845816686875814 9 25.459574563060734 17.05459076823529 22.064793441057073 35.4210412276469 10-11 23.30890525152734 27.39620600017105 29.930569285639088 19.364319462662525 12-13 24.491253906613398 25.0917707261605 29.967642980124587 20.449332387101514 14-15 21.68264996526687 26.16280941573082 27.65054695056518 24.503993668437133 16-17 20.954449129736005 29.347157324602613 28.213358025427777 21.485035520233605 18-19 20.95952528289678 28.437933361762425 30.1244901873219 20.478051168018894 20-21 21.938278438833713 27.59528661659244 29.905512098747387 20.56092284582646 22-23 21.58778490248317 27.583967684509158 29.726350408758368 21.10189700424931 24-25 21.30792662961912 27.723493987387187 29.88430897152413 21.08427041146956 26-27 21.24438420900818 27.862838379807254 29.806168776004522 21.086608635180042 28-29 21.21128575738414 27.886616718511124 29.827742798126383 21.07435472597835 30-31 21.427079973408436 27.780934726531907 29.784619602841666 21.007365697217985 32-33 21.214896196744824 27.968187972701287 29.691721011767324 21.125194818786568 34-35 21.40415906122071 27.94180239233252 29.70543129187466 20.94860725457211 36-37 21.36697601549456 27.889146945479464 29.589578342710322 21.154298696315653 38-39 21.19775410826639 27.957790359238793 29.7467946988869 21.097660833607918 40-41 21.38852112081108 27.79086176429828 29.691085244597424 21.12953187029321 42-43 21.38127078578457 27.865790440177324 29.458633653578975 21.294305120459132 44-45 21.354412753367797 28.087764565807866 29.28685251134336 21.270970169480975 46-47 21.48280563069152 28.00301241459301 29.024653843905867 21.4895281108096 48-49 21.470903561296158 28.045657856762567 29.006377430086346 21.477061151854933 50-51 21.37881435548274 28.258077846604017 28.861959551412973 21.501148246500268 52-53 21.566048414872782 28.14422151831434 28.840639143087 21.44909092372588 54-55 21.533592781536505 28.148081768856404 28.78687695626292 21.531448493344172 56-57 21.589510111287456 28.244763783164718 28.66872879220466 21.49699731334317 58-59 21.432869406389525 28.307216448099993 28.836699111504853 21.423215034005626 60-61 21.555693395523985 28.384187929588116 28.730314813090494 21.3298038617974 62-63 21.482133952917135 28.3998619975088 28.756059406408284 21.361944643165774 64-65 21.375295358591075 28.333696066616753 28.789804875469304 21.501203699322865 66-67 21.466377691890383 28.484080243537058 28.537352851416053 21.512189213156503 68-69 21.483717162691253 28.27398019715666 28.68488215868882 21.557420481463268 70-71 21.488857391502314 28.064102587640864 28.73332005302332 21.713719967833498 72-73 21.548391377882435 28.134062844655645 28.718794870126125 21.5987509073358 74-75 21.41742421332414 28.298208870205393 28.643402809332464 21.640964107138004 76-77 21.584701068612766 28.096819461307565 28.628276683103525 21.690202786976144 78-79 21.593539390123244 28.16037535287269 28.4949504986917 21.751134758312364 80-81 21.644063867396913 28.178325460990855 28.448255044577742 21.729355627034494 82-83 21.71561810612076 28.10630025239985 28.559999697183674 21.618081944295717 84-85 21.802147232643836 28.1325977016257 28.427457121755236 21.637797943975233 86-87 21.593402269504537 28.251822561662276 28.54939432230391 21.605380846529275 88-89 21.749802580619836 28.168562177919533 28.455581520237438 21.6260537212232 90-91 21.824785853292852 28.194970375836647 28.463769620862372 21.516474150008126 92-93 21.81200678429703 28.182939627713438 28.428910952432023 21.576142635557506 94-95 21.683063791027656 28.262626515271723 28.467750150918157 21.586559542782467 96-97 21.743354386663203 28.374544613458006 28.56506198761571 21.317039012263084 98-99 22.71512924648262 30.29774460721534 28.75591556916165 18.23121057714039 100 21.705270867892796 31.139929236674053 22.817889845812086 24.336910049621068 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1376.0 1 1370.0 2 1776.5 3 2279.5 4 2822.0 5 3849.0 6 4744.0 7 6053.0 8 7236.0 9 7454.5 10 7155.5 11 6893.0 12 7543.5 13 9558.5 14 13738.0 15 18441.5 16 21597.0 17 22917.0 18 22083.5 19 20141.5 20 18653.0 21 18268.5 22 19877.0 23 23890.5 24 29878.0 25 38545.0 26 50594.5 27 64012.5 28 77216.0 29 91398.5 30 104973.5 31 117350.5 32 131214.0 33 144951.0 34 157127.0 35 169060.0 36 181428.0 37 192047.0 38 197661.0 39 201014.5 40 204229.5 41 205386.0 42 205784.5 43 208242.0 44 209709.5 45 208785.5 46 205485.5 47 200867.5 48 196561.0 49 190703.5 50 184189.0 51 176871.5 52 167814.5 53 156671.5 54 144750.0 55 132641.5 56 119849.0 57 106698.0 58 93976.0 59 81088.5 60 67522.5 61 54347.0 62 42078.0 63 32159.5 64 24496.0 65 18258.5 66 13233.0 67 9611.5 68 7096.0 69 5072.5 70 3710.0 71 2706.0 72 1811.5 73 1178.0 74 775.0 75 503.5 76 323.0 77 178.5 78 110.0 79 68.0 80 42.0 81 32.5 82 25.5 83 20.5 84 17.0 85 11.0 86 5.0 87 1.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00531317198540201 3 5.9254706156899745E-5 4 8.295658861965965E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 9.87637153171461E-6 24-25 3.950823702295162E-5 26-27 5.828139621283536E-4 28-29 0.0013241333078124755 30-31 6.528164728147933E-4 32-33 7.730254551336026E-4 34-35 0.0011922176798728618 36-37 0.0 38-39 2.1057446820671474E-4 40-41 7.97380554411634E-4 42-43 3.759015796197136E-4 44-45 0.0 46-47 0.0 48-49 0.0016565832148112295 50-51 0.0038149062153124656 52-53 0.0 54-55 0.0038403686753928374 56-57 0.03919663455072604 58-59 0.05682001747207406 60-61 0.030124115951813225 62-63 0.007040898127253529 64-65 0.0 66-67 0.0 68-69 6.81071325194531E-5 70-71 0.003821003101667713 72-73 0.008143172280641556 74-75 0.005925423509691581 76-77 0.00711648527904188 78-79 0.010449529191983886 80-81 0.011469122105103036 82-83 0.0428643177134474 84-85 0.025434557364728348 86-87 0.001220255949930657 88-89 0.0017741006222060274 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 179.0 22-23 365.0 24-25 442.0 26-27 1267.0 28-29 3296.0 30-31 9551.0 32-33 11608.0 34-35 15775.0 36-37 26121.0 38-39 32521.0 40-41 32056.0 42-43 34778.0 44-45 41801.0 46-47 43494.0 48-49 41997.0 50-51 38306.0 52-53 33470.0 54-55 35885.0 56-57 37957.0 58-59 40369.0 60-61 41082.0 62-63 39201.0 64-65 40776.0 66-67 44262.0 68-69 46258.0 70-71 49037.0 72-73 41407.0 74-75 39646.0 76-77 42041.0 78-79 44935.0 80-81 45487.0 82-83 42020.0 84-85 39881.0 86-87 40835.0 88-89 44100.0 90-91 45887.0 92-93 44937.0 94-95 49499.0 96-97 148665.0 98-99 331292.0 100-101 3320364.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.4608063661859 #Duplication Level Percentage of deduplicated Percentage of total 1 90.45653265398003 78.2094475435234 2 6.83943070809285 11.826853882147233 3 1.5487149836066192 4.017094389420681 4 0.554648417598413 1.918213977411512 5 0.24294503768280823 1.0502611930359511 6 0.12197142052620356 0.6327448423394831 7 0.07210578023391889 0.43640267318813314 8 0.04368985293874024 0.30219679320828463 9 0.030092332531821336 0.2341626602526613 >10 0.08765486014588215 1.1371298656660134 >50 0.001553876544209675 0.09163668277007324 >100 5.912395272391704E-4 0.10850259397646521 >500 6.883659124711378E-5 0.03535290306012751 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.975156871896658E-5 0.0 2 0.0 0.0 0.0 1.975156871896658E-5 0.0 3 0.0 0.0 0.0 1.975156871896658E-5 0.0 4 0.0 3.950313743793316E-5 0.0 9.875784359483291E-5 0.0 5 0.0 5.9254706156899745E-5 0.0 9.875784359483291E-5 0.0 6 0.0 5.9254706156899745E-5 0.0 9.875784359483291E-5 0.0 7 0.0 5.9254706156899745E-5 0.0 9.875784359483291E-5 0.0 8 0.0 7.900627487586633E-5 0.0 9.875784359483291E-5 0.0 9 0.0 1.7776411847069925E-4 0.0 9.875784359483291E-5 0.0 10-11 0.0 1.7776411847069925E-4 0.0 1.0863362795431619E-4 0.0 12-13 0.0 1.7776411847069925E-4 0.0 1.5801254975173265E-4 0.0 14-15 0.0 2.567703933465656E-4 0.0 1.6788833411121595E-4 0.0 16-17 0.0 2.567703933465656E-4 0.0 1.8763990283018255E-4 0.0 18-19 0.0 2.6664617770604887E-4 0.0 1.9751568718966582E-4 0.0 20-21 0.0 2.7652196206553217E-4 0.0 2.468946089870823E-4 0.0 22-23 0.0 3.160250995034653E-4 0.0 2.7652196206553217E-4 0.0 24-25 0.0 3.160250995034653E-4 0.0 3.259008838629486E-4 0.0 26-27 0.0 3.160250995034653E-4 0.0 4.147829430982982E-4 0.0 28-29 0.0 3.259008838629486E-4 0.0 9.184479454319461E-4 0.0 30-31 0.0 3.7527980566036504E-4 0.0 0.002617082855263072 0.0 32-33 0.0 3.7527980566036504E-4 0.0 0.005767458065938242 0.0 34-35 0.0 4.147829430982982E-4 0.0 0.008917833276613413 0.0 36-37 0.0 4.5428608053623136E-4 0.0 0.014724794479989587 0.0 38-39 0.0 4.5428608053623136E-4 0.0 0.03190865926549051 0.0 40-41 0.0 5.135407866931311E-4 0.0 0.050820786313901016 0.0 42-43 0.0 5.332923554120977E-4 0.0 0.06261247283912406 0.0 44-45 0.0 6.12298630287964E-4 0.0 0.07628055839264894 0.0 46-47 0.0 6.715533364448638E-4 0.0 0.09079796140108938 0.0 48-49 0.0 6.715533364448638E-4 0.0 0.10513760029105912 0.0 50-51 0.0 7.505596113207302E-4 0.0 0.12013891673311423 0.0 52-53 0.0 7.703111800396967E-4 0.0 0.1569755923939869 0.0 54-55 0.0 7.703111800396967E-4 0.0 0.19998463327953664 0.0 56-57 0.0 7.703111800396967E-4 0.0 0.2607997133652348 0.0 58-59 0.0 7.703111800396967E-4 0.0 0.3021594982627508 0.0 60-61 0.0 7.8018696439918E-4 0.0 0.3231159126735743 0.0 62-63 0.0 7.900627487586633E-4 0.0 0.34022077118419936 0.0 64-65 0.0 8.49317454915563E-4 0.0 0.34593885032834015 0.0 66-67 0.0 8.690690236345296E-4 0.0 0.3524963711430371 0.0 68-69 0.0 8.789448079940129E-4 0.0 0.3587279910738711 0.0 70-71 0.0 8.986963767129794E-4 0.0 0.3634584917820636 0.0 72-73 0.0 9.085721610724627E-4 0.0 0.36791247052819054 0.0 74-75 0.0 9.381995141509126E-4 0.0 0.37121098250425794 0.0 76-77 0.0 9.678268672293625E-4 0.0 0.3740058294779917 0.0 78-79 0.0 9.875784359483291E-4 0.0 0.37581309801577717 0.0 80-81 1.975156871896658E-5 9.875784359483291E-4 0.0 0.3764747755678626 0.0 82-83 3.950313743793316E-5 9.875784359483291E-4 0.0 0.37716608047302635 0.0 84-85 3.950313743793316E-5 9.875784359483291E-4 0.0 0.37744260243509187 0.0 86-87 3.950313743793316E-5 9.875784359483291E-4 0.0 0.3775512360630462 0.0 88 3.950313743793316E-5 0.001086336279543162 0.0 0.37757098763176516 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6320 0.0 51.56794 1 GTATCAA 12425 0.0 36.413593 1 TCAACGC 15540 0.0 31.14132 4 ATCAACG 15665 0.0 30.865631 3 CAACGCA 15855 0.0 30.52262 5 AACGCAG 16360 0.0 29.658564 6 TATCAAC 16465 0.0 29.600544 2 ACGCAGA 18735 0.0 25.853329 7 CGCAGAG 19140 0.0 25.306274 8 GCAGAGT 22170 0.0 21.943712 9 GGACCGA 665 0.0 21.139854 6 TACATGG 17400 0.0 21.105392 2 ACATGGG 17440 0.0 20.347368 3 GAGTACT 12920 0.0 19.7668 12-13 GTACATG 17355 0.0 19.269943 1 CAGAGTA 22325 0.0 18.890932 10-11 AGAGTAC 20935 0.0 18.425749 10-11 CATGGGG 11320 0.0 18.138872 4 GTACTTT 14795 0.0 17.00274 14-15 ACCGAAC 555 0.0 16.88649 8 >>END_MODULE