##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139177_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4609030 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.145199098291833 18.0 18.0 30.0 18.0 32.0 2 28.573706181127047 29.0 27.0 32.0 25.0 33.0 3 30.503132546327535 31.0 29.0 33.0 27.0 33.0 4 31.42631594934292 33.0 31.0 33.0 29.0 33.0 5 32.630310065241495 33.0 33.0 33.0 32.0 34.0 6 36.617765994146275 38.0 37.0 38.0 34.0 38.0 7 37.04541237527202 38.0 38.0 38.0 35.0 38.0 8 37.23966691473043 38.0 38.0 38.0 36.0 38.0 9 37.40334690813469 38.0 38.0 38.0 37.0 38.0 10-11 37.454851888575256 38.0 38.0 38.0 37.0 38.0 12-13 37.496383946296724 38.0 38.0 38.0 37.0 38.0 14-15 37.49693623170168 38.0 38.0 38.0 37.0 38.0 16-17 37.51598340648683 38.0 38.0 38.0 37.0 38.0 18-19 37.51775818339217 38.0 38.0 38.0 37.0 38.0 20-21 37.520442656110276 38.0 38.0 38.0 37.0 38.0 22-23 37.530283051140614 38.0 38.0 38.0 37.5 38.0 24-25 37.535054109425076 38.0 38.0 38.0 38.0 38.0 26-27 37.50216785742046 38.0 38.0 38.0 37.5 38.0 28-29 37.47903848410817 38.0 38.0 38.0 37.0 38.0 30-31 37.47768606286081 38.0 38.0 38.0 37.0 38.0 32-33 37.467888495274366 38.0 38.0 38.0 37.0 38.0 34-35 37.44213684884958 38.0 38.0 38.0 37.0 38.0 36-37 37.42263093575876 38.0 38.0 38.0 37.0 38.0 38-39 37.413114920271035 38.0 38.0 38.0 37.0 38.0 40-41 37.404915927244474 38.0 38.0 38.0 37.0 38.0 42-43 37.36925455532514 38.0 38.0 38.0 37.0 38.0 44-45 37.32872693637539 38.0 38.0 38.0 37.0 38.0 46-47 37.30164624904396 38.0 38.0 38.0 37.0 38.0 48-49 37.26172648654811 38.0 38.0 38.0 37.0 38.0 50-51 37.22777151897816 38.0 38.0 38.0 37.0 38.0 52-53 37.19009159258589 38.0 38.0 38.0 37.0 38.0 54-55 37.170695848959625 38.0 38.0 38.0 36.5 38.0 56-57 37.12261688922301 38.0 38.0 38.0 36.0 38.0 58-59 37.091620948511434 38.0 38.0 38.0 36.0 38.0 60-61 37.116238881905545 38.0 38.0 38.0 36.0 38.0 62-63 37.127392514400256 38.0 38.0 38.0 36.0 38.0 64-65 37.13220403383093 38.0 38.0 38.0 36.0 38.0 66-67 37.12322472874568 38.0 38.0 38.0 36.0 38.0 68-69 37.08399924540787 38.0 38.0 38.0 36.0 38.0 70-71 37.07475569614836 38.0 38.0 38.0 36.0 38.0 72-73 37.08256046636458 38.0 38.0 38.0 36.0 38.0 74-75 37.091610925656795 38.0 38.0 38.0 36.0 38.0 76-77 37.07079918502729 38.0 38.0 38.0 36.0 38.0 78-79 37.027504101013065 38.0 38.0 38.0 36.0 38.0 80-81 36.96963436830276 38.0 38.0 38.0 36.0 38.0 82-83 36.9211792534646 38.0 38.0 38.0 35.5 38.0 84-85 36.89681177961363 38.0 38.0 38.0 35.0 38.0 86-87 36.916211654577566 38.0 38.0 38.0 35.0 38.0 88-89 36.865503884811865 38.0 38.0 38.0 35.0 38.0 90-91 36.87874290951818 38.0 38.0 38.0 35.0 38.0 92-93 36.86437206671769 38.0 38.0 38.0 35.0 38.0 94-95 36.86697518003993 38.0 38.0 38.0 35.0 38.0 96-97 36.85521253497906 38.0 38.0 38.0 35.0 38.0 98-99 36.83241262751184 38.0 38.0 38.0 35.0 38.0 100 35.281976248990574 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 6.0 20 20.0 21 47.0 22 178.0 23 585.0 24 1540.0 25 3261.0 26 6058.0 27 10221.0 28 16435.0 29 24262.0 30 32344.0 31 42662.0 32 55544.0 33 77413.0 34 121370.0 35 239056.0 36 893547.0 37 3084478.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.40936813168931 27.438701852667478 12.858584127245862 22.293345888397344 2 14.618815671821364 21.184289122976942 41.11315574724652 23.083739457955172 3 17.943303819486257 26.800755821786957 30.689974860181863 24.56596549854492 4 12.827245464419413 17.784414066212165 38.98496898026948 30.40337148909894 5 13.33757862283387 37.683243545822 35.527648984710446 13.451528846633673 6 29.77016856041293 38.43244674042043 18.66659579130533 13.130788907861307 7 26.067437183094928 32.72259021963407 24.091468269896268 17.11850432737474 8 23.948965400528962 37.50368298752666 21.48456399719681 17.06278761474757 9 25.89080565758956 16.499523760964887 21.543773852632768 36.06589672881279 10-11 24.272222137846793 26.804056384966035 29.214823943432783 19.708897533754392 12-13 24.903190042156375 24.538482066725535 29.28691069487506 21.27141719624303 14-15 22.232389461556988 25.684753624949288 26.70237555407537 25.38048135941836 16-17 21.81622814344884 28.645691175800547 27.4799903667366 22.058090314014013 18-19 21.84429261688468 27.941486603471883 29.022581757983783 21.191639021659654 20-21 22.690640343961853 27.232406946453345 28.73507580115815 21.341876908426656 22-23 22.427216390430267 27.05724129124954 28.650359973221285 21.86518234509891 24-25 22.14462401055409 27.225363664768782 28.76202089987502 21.86799142480211 26-27 22.06973005606164 27.344014138453197 28.733847611466835 21.852408194018327 28-29 22.05021904661941 27.352698325897904 28.783434581090233 21.813648046392448 30-31 22.27090370130171 27.290517442417713 28.64129989474281 21.797278961537767 32-33 22.073567665070144 27.516574392435682 28.557031618857714 21.85282632363646 34-35 22.217261950296837 27.42303030091086 28.57651026983928 21.783197478953024 36-37 22.243265230838144 27.223047474125334 28.57681924128792 21.9568680537486 38-39 22.013037882850483 27.524749695726737 28.6773408041833 21.784871617239485 40-41 22.25616524342004 27.35256532865675 28.61282384882019 21.77844557910302 42-43 22.143442826574507 27.509233350668588 28.324917491175448 22.02240633158145 44-45 22.197181492703976 27.57473722692798 28.2526919789682 21.975389301399844 46-47 22.316063613275734 27.50471332992761 28.06350452415702 22.11571853263964 48-49 22.214357812491166 27.630347976479687 28.069862724324597 22.08543148670455 50-51 22.10557713404276 27.76271379503001 27.96729175239277 22.16441731853446 52-53 22.367575721771303 27.664441145926684 27.78425188231229 22.183731249989723 54-55 22.384226643237607 27.545476701561565 27.8700539801573 22.200242675043526 56-57 22.30435753474045 27.646894422114542 27.883677462481458 22.16507058066355 58-59 22.186640180683483 27.590305908528684 27.832288416168478 22.39076549461935 60-61 22.420779806995768 27.577800508902143 28.054146994334612 21.947272689767473 62-63 22.17411060097411 27.6060058821 28.044327321334002 22.17555619559189 64-65 22.10013801725395 27.56583895480408 28.03922119135643 22.294801836585542 66-67 22.145499103082926 27.797732174827424 27.98489965736356 22.071869064726087 68-69 22.139735249829126 27.84862475654224 27.927849976334752 22.083790017293886 70-71 22.245935155397927 27.539901073418687 27.713559804691734 22.500603966491646 72-73 22.291659830702336 27.6940007921537 27.572025657925504 22.44231371921846 74-75 22.064032411215997 27.83521774784552 27.824866021509138 22.275883819429342 76-77 22.26843654546856 27.378812450706185 27.833912453134584 22.518838550690667 78-79 22.24742000179715 27.4293266816536 27.440128273239413 22.883125043309843 80-81 22.531183176976015 27.729649585197265 27.372075462315326 22.367091775511398 82-83 22.636064465055846 27.3613295845951 27.46124486726958 22.541361083079476 84-85 22.419456461222982 27.372762199191502 27.416983944200652 22.790797395384864 86-87 22.244902583071656 27.703643533537754 27.518163402652725 22.533290480737868 88-89 22.649432221664647 27.68857993007387 27.476729734908467 22.185258113353015 90-91 22.710089209030652 27.65745073611889 27.498749262132733 22.133710792717732 92-93 22.53144135065638 27.414703569154714 27.374551776216027 22.67930330397288 94-95 22.603315075047277 27.643416599606564 27.46090235524685 22.292365970099308 96-97 22.95369321598524 27.487274624581232 27.58263640698943 21.976395752444102 98-99 23.62401255441824 29.577678184485045 27.890991508387053 18.907317752709663 100 30.168404361994334 40.600929819698955 29.23066581830671 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1074.0 1 1051.0 2 1309.5 3 1731.5 4 2165.0 5 2874.5 6 3480.5 7 4231.5 8 4985.0 9 5246.5 10 5224.5 11 5143.5 12 5510.0 13 6850.5 14 9771.0 15 13169.0 16 15346.0 17 16177.5 18 15971.5 19 14975.5 20 13970.0 21 13875.5 22 15268.5 23 18293.0 24 23336.5 25 30947.5 26 41223.5 27 51960.5 28 61220.0 29 71070.0 30 80369.0 31 88773.0 32 100310.5 33 113881.0 34 125405.5 35 137269.0 36 150941.0 37 160126.0 38 166389.5 39 171374.5 40 176397.5 41 180461.0 42 181711.0 43 184987.0 44 188809.0 45 190646.5 46 189721.0 47 188993.0 48 189193.5 49 188755.0 50 185994.0 51 180923.5 52 175404.5 53 168828.5 54 159834.5 55 148591.0 56 135898.0 57 122153.0 58 108293.5 59 93655.0 60 79342.0 61 64699.0 62 50625.5 63 39151.0 64 29420.5 65 21579.5 66 15686.5 67 11717.5 68 8836.0 69 6455.5 70 4639.5 71 3317.0 72 2305.5 73 1507.5 74 948.0 75 599.0 76 405.0 77 257.5 78 152.0 79 90.0 80 58.5 81 39.0 82 30.5 83 23.0 84 15.5 85 9.0 86 6.5 87 5.0 88 2.5 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.004838328238262715 3 1.5187577429524217E-4 4 6.075030971809687E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 3.254755224505964E-5 26-27 4.8826381957501735E-4 28-29 0.0010311545435816925 30-31 5.976781616115229E-4 32-33 5.882624644101209E-4 34-35 8.305502614047664E-4 36-37 0.0 38-39 1.6578610299096918E-4 40-41 6.123288972145827E-4 42-43 2.0187662265345064E-4 44-45 0.0 46-47 0.0 48-49 0.0014305714267584923 50-51 0.003202797404779086 52-53 0.0 54-55 0.003919690166847355 56-57 0.040172898803249105 58-59 0.058780787987580796 60-61 0.03078674321381575 62-63 0.0068967257580089605 64-65 0.0 66-67 0.0 68-69 2.5263137684226693E-5 70-71 0.00309159962558429 72-73 0.007672915744151404 74-75 0.005456223854506267 76-77 0.006756820957969407 78-79 0.010012833782820568 80-81 0.011647065277342026 82-83 0.04501274016423087 84-85 0.02677209191954378 86-87 0.0012027672597801063 88-89 0.001344388642095299 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 16.0 20-21 82.0 22-23 229.0 24-25 365.0 26-27 1171.0 28-29 3410.0 30-31 10955.0 32-33 13454.0 34-35 18289.0 36-37 29114.0 38-39 32940.0 40-41 32422.0 42-43 35847.0 44-45 42620.0 46-47 43620.0 48-49 41692.0 50-51 37275.0 52-53 34198.0 54-55 37209.0 56-57 39954.0 58-59 21726.0 60-61 41070.0 62-63 38805.0 64-65 40288.0 66-67 42876.0 68-69 44421.0 70-71 44061.0 72-73 40387.0 74-75 41186.0 76-77 42997.0 78-79 44626.0 80-81 44495.0 82-83 41447.0 84-85 40598.0 86-87 41212.0 88-89 43762.0 90-91 44942.0 92-93 43454.0 94-95 48827.0 96-97 159144.0 98-99 1031810.0 100-101 2172034.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.49471461274955 #Duplication Level Percentage of deduplicated Percentage of total 1 92.06410291411447 81.47186513463365 2 5.751473283064554 10.179499735753028 3 1.2676346816004815 3.3653690814437476 4 0.4313861043452925 1.5270156076776984 5 0.19053284521346764 0.8430574880760502 6 0.09586998736686587 0.509039230317522 7 0.058681195777204896 0.36350829714070426 8 0.03746666259778068 0.26524812912662227 9 0.022967044568876053 0.18292158491588872 >10 0.07773556352949512 1.0533260655519023 >50 0.00122137897921879 0.07044168973988642 >100 8.577992946639829E-4 0.1269776644646418 >500 7.053954763487404E-5 0.041730291158637335 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.1696539185034596E-5 0.0 0.0 0.0 3 0.0 2.1696539185034596E-5 0.0 0.0 0.0 4 0.0 6.508961755510379E-5 0.0 0.0 0.0 5 0.0 6.508961755510379E-5 0.0 0.0 0.0 6 0.0 6.508961755510379E-5 0.0 0.0 0.0 7 0.0 6.508961755510379E-5 0.0 0.0 0.0 8 2.1696539185034596E-5 6.508961755510379E-5 0.0 0.0 0.0 9 2.1696539185034596E-5 1.3017923511020758E-4 0.0 2.1696539185034596E-5 0.0 10-11 2.1696539185034596E-5 1.3017923511020758E-4 0.0 3.2544808777551894E-5 1.0848269592517298E-5 12-13 2.1696539185034596E-5 1.3017923511020758E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 14-15 2.1696539185034596E-5 2.9290327899796705E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 16-17 2.1696539185034596E-5 3.0375154859048435E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 18-19 2.1696539185034596E-5 3.2544808777551894E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 20-21 2.1696539185034596E-5 3.6884116614558813E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 22-23 2.1696539185034596E-5 4.122342445156573E-4 0.0 4.339307837006919E-5 2.1696539185034596E-5 24-25 2.1696539185034596E-5 4.339307837006919E-4 0.0 6.508961755510379E-5 8.678615674013838E-5 26-27 2.1696539185034596E-5 4.556273228857265E-4 0.0 1.3017923511020758E-4 8.678615674013838E-5 28-29 2.1696539185034596E-5 4.556273228857265E-4 0.0 5.966548275884514E-4 8.678615674013838E-5 30-31 2.1696539185034596E-5 4.773238620707611E-4 0.0 0.001822509291542906 8.678615674013838E-5 32-33 2.1696539185034596E-5 4.773238620707611E-4 0.0 0.005228865943593337 1.3017923511020758E-4 34-35 2.1696539185034596E-5 5.532617492183822E-4 0.0 0.008700312213198873 1.5187577429524217E-4 36-37 2.1696539185034596E-5 6.291996363660033E-4 0.0 0.015513025517299736 1.5187577429524217E-4 38-39 2.1696539185034596E-5 6.400479059585206E-4 0.0 0.03510500040138598 1.6272404388775947E-4 40-41 2.1696539185034596E-5 7.376823322911763E-4 0.0 0.05600961590616681 1.9526885266531136E-4 42-43 2.1696539185034596E-5 7.702271410687282E-4 0.0 0.06702060954257186 2.0611712225782866E-4 44-45 2.1696539185034596E-5 8.570132978088665E-4 0.0 0.08099318077773415 2.1696539185034596E-4 46-47 2.1696539185034596E-5 9.11254645771453E-4 0.0 0.09598548935459306 2.1696539185034596E-4 48-49 2.1696539185034596E-5 9.221029153639703E-4 0.0 0.11042453618223358 2.1696539185034596E-4 50-51 4.339307837006919E-5 0.0010305856112891433 0.0 0.12384384566817747 2.1696539185034596E-4 52-53 4.339307837006919E-5 0.0010414338808816606 0.0 0.16659687613228813 2.1696539185034596E-4 54-55 4.339307837006919E-5 0.0010414338808816606 0.0 0.2230838159005257 2.1696539185034596E-4 56-57 4.339307837006919E-5 0.0010631304200666952 0.0 0.29449797462806704 2.1696539185034596E-4 58-59 4.339307837006919E-5 0.001095675228844247 0.0 0.5491285585036331 2.1696539185034596E-4 60-61 4.339307837006919E-5 0.001128220037621799 0.0 0.7740999733132568 2.1696539185034596E-4 62-63 4.339307837006919E-5 0.0011499165768068336 0.0 0.7829196164919734 2.1696539185034596E-4 64-65 4.339307837006919E-5 0.0012150061943619374 0.0 0.7909256394512512 2.1696539185034596E-4 66-67 4.339307837006919E-5 0.0012150061943619374 0.0 0.7982265248870153 2.1696539185034596E-4 68-69 4.339307837006919E-5 0.0012150061943619374 0.0 0.806568844203661 2.1696539185034596E-4 70-71 6.508961755510379E-5 0.0012150061943619374 0.0 0.812774054410581 2.3866193103538056E-4 72-73 1.0848269592517298E-4 0.0012150061943619374 0.0 0.8173954172569933 2.3866193103538056E-4 74-75 1.0848269592517298E-4 0.0012583992727320066 0.0 0.8212031598839669 2.3866193103538056E-4 76-77 1.0848269592517298E-4 0.0013234888902871104 0.0 0.8253255023291235 2.3866193103538056E-4 78-79 1.0848269592517298E-4 0.0013777302382496969 0.0 0.8278531491441801 2.3866193103538056E-4 80-81 1.0848269592517298E-4 0.0013885785078422141 0.0 0.8285365901285087 2.4951020062789785E-4 82-83 1.0848269592517298E-4 0.0013994267774347314 0.0 0.8291440932256895 2.8205500940544975E-4 84-85 1.0848269592517298E-4 0.0014102750470272487 0.0 0.8294478447742801 2.8205500940544975E-4 86-87 1.0848269592517298E-4 0.0014319715862122833 0.0 0.8296105688181679 2.8205500940544975E-4 88 1.0848269592517298E-4 0.0014970612037673871 0.0 0.8296322653573528 2.8205500940544975E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4645 0.0 50.797485 1 GTATCAA 9100 0.0 35.51353 1 TCAACGC 11260 0.0 30.683239 4 CAACGCA 11490 0.0 30.03237 5 ATCAACG 11505 0.0 30.029837 3 AACGCAG 11810 0.0 29.147272 6 TATCAAC 12125 0.0 28.46047 2 CGAGACC 4020 0.0 27.219526 86-87 AGACCGA 4245 0.0 26.37171 88-89 GAGACCG 4230 0.0 25.047447 88-89 GACCGAG 4340 0.0 24.841305 90-91 ACGCAGA 13945 0.0 24.684784 7 ACCGAGG 4605 0.0 24.484562 90-91 GCCCACG 4310 0.0 24.008213 82-83 CGCAGAG 14395 0.0 24.000921 8 CACGAGA 4530 0.0 23.983015 84-85 CCCACGA 4460 0.0 23.570988 82-83 ACGAGAC 4555 0.0 23.465279 86-87 TCCGAGC 4375 0.0 23.189135 76-77 TCTCCGA 4430 0.0 22.864145 74-75 >>END_MODULE