##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139175_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6121690 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.90124867479405 28.0 18.0 32.0 18.0 33.0 2 27.768301400430275 29.0 25.0 31.0 18.0 33.0 3 30.62486715269803 31.0 29.0 33.0 27.0 33.0 4 30.10260793996429 31.0 29.0 33.0 25.0 33.0 5 31.711964996594077 33.0 31.0 33.0 29.0 33.0 6 36.073396071999724 38.0 36.0 38.0 33.0 38.0 7 36.411800172828094 38.0 37.0 38.0 34.0 38.0 8 36.63226984705204 38.0 37.0 38.0 34.0 38.0 9 36.93433349287533 38.0 38.0 38.0 35.0 38.0 10-11 37.1144992640921 38.0 38.0 38.0 36.0 38.0 12-13 37.218544797270035 38.0 38.0 38.0 36.0 38.0 14-15 37.13648494124988 38.0 38.0 38.0 36.0 38.0 16-17 37.33007551836176 38.0 38.0 38.0 36.5 38.0 18-19 37.36279736477999 38.0 38.0 38.0 37.0 38.0 20-21 37.40022431456579 38.0 38.0 38.0 37.0 38.0 22-23 37.421415790841564 38.0 38.0 38.0 37.0 38.0 24-25 37.438883378106496 38.0 38.0 38.0 37.0 38.0 26-27 37.40040711152784 38.0 38.0 38.0 37.0 38.0 28-29 37.37464607533599 38.0 38.0 38.0 37.0 38.0 30-31 37.383862693481646 38.0 38.0 38.0 37.0 38.0 32-33 37.370631894422274 38.0 38.0 38.0 37.0 38.0 34-35 37.341367185560955 38.0 38.0 38.0 37.0 38.0 36-37 37.31879482975315 38.0 38.0 38.0 37.0 38.0 38-39 37.32904157494123 38.0 38.0 38.0 37.0 38.0 40-41 37.323858312705894 38.0 38.0 38.0 37.0 38.0 42-43 37.28381959787866 38.0 38.0 38.0 37.0 38.0 44-45 37.19375611920192 38.0 38.0 38.0 37.0 38.0 46-47 37.22347599971831 38.0 38.0 38.0 37.0 38.0 48-49 37.1762154788032 38.0 38.0 38.0 37.0 38.0 50-51 37.13198016605892 38.0 38.0 38.0 36.0 38.0 52-53 37.11592662527243 38.0 38.0 38.0 36.0 38.0 54-55 37.09434651775348 38.0 38.0 38.0 36.0 38.0 56-57 37.060199508494605 38.0 38.0 38.0 36.0 38.0 58-59 37.05452328019007 38.0 38.0 38.0 36.0 38.0 60-61 37.065091403972744 38.0 38.0 38.0 36.0 38.0 62-63 37.079746050806946 38.0 38.0 38.0 36.0 38.0 64-65 37.043427501751864 38.0 38.0 38.0 36.0 38.0 66-67 37.078575355756456 38.0 38.0 38.0 36.0 38.0 68-69 37.074203354226086 38.0 38.0 38.0 36.0 38.0 70-71 37.08230953249928 38.0 38.0 38.0 36.0 38.0 72-73 37.07087933743439 38.0 38.0 38.0 36.0 38.0 74-75 37.066896946302556 38.0 38.0 38.0 36.0 38.0 76-77 37.06015007236651 38.0 38.0 38.0 36.0 38.0 78-79 37.041783857049225 38.0 38.0 38.0 36.0 38.0 80-81 37.01484105423711 38.0 38.0 38.0 36.0 38.0 82-83 36.984931297730824 38.0 38.0 38.0 36.0 38.0 84-85 36.96930820424465 38.0 38.0 38.0 36.0 38.0 86-87 36.96884404213811 38.0 38.0 38.0 36.0 38.0 88-89 36.95533267288396 38.0 38.0 38.0 36.0 38.0 90-91 36.93528311087978 38.0 38.0 38.0 35.0 38.0 92-93 36.91339261107714 38.0 38.0 38.0 35.0 38.0 94-95 36.890109748706756 38.0 38.0 38.0 35.0 38.0 96-97 36.89364518028687 38.0 38.0 38.0 35.0 38.0 98-99 36.90050024504544 38.0 38.0 38.0 35.0 38.0 100 35.55925345854078 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 3.0 19 9.0 20 19.0 21 90.0 22 367.0 23 1089.0 24 2784.0 25 5811.0 26 10432.0 27 17218.0 28 26894.0 29 39421.0 30 52546.0 31 68586.0 32 88921.0 33 122092.0 34 189031.0 35 364533.0 36 1157409.0 37 3974433.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.03043603972106 20.70343320226931 13.272691037932335 23.9934397200773 2 15.393799798254534 20.900487211216067 41.56969407382904 22.13601891670036 3 18.195884759679675 27.177712529106245 29.98308594996878 24.643316761245295 4 12.831017714228867 17.9162156065099 38.86595676454652 30.386809914714714 5 13.428497686096485 37.56292788429339 35.56468883592603 13.443885593684096 6 29.622462004599402 38.14972143185952 18.91079579369132 13.317020769849758 7 26.117085314676174 32.70337112790749 24.035225566796097 17.144317990620237 8 23.960050247562357 37.32549345033806 21.48767742241113 17.22677887968845 9 26.008210151118398 16.672275139708155 21.462373952290953 35.857140756882494 10-11 24.3000175278424 26.729102050104146 29.141761366838466 19.829119055214992 12-13 25.130584854835835 24.476427261099467 29.175652475051823 21.217335409012872 14-15 22.41675909756946 25.530784799622324 26.748912473516302 25.303543629291912 16-17 21.814507105064123 28.512673787793897 27.497267911312072 22.17555119582991 18-19 21.87745540855548 27.686431361274423 29.232769055603924 21.203344174566176 20-21 22.757576175863317 26.916150989265052 29.024164355943476 21.302108478928155 22-23 22.555091842539778 26.78334864144429 28.854578935739834 21.8069805802761 24-25 22.19921728766512 26.964105849055663 28.967438392504807 21.86923847077441 26-27 22.099681939153278 27.066950280588582 28.982177515106134 21.851190265152002 28-29 22.105244750987683 27.001114318887392 29.047630370693046 21.846010559431882 30-31 22.339086544798935 26.968698002681496 28.858665094010988 21.83355035850858 32-33 22.11877754335377 27.170804685870326 28.79305596061742 21.917361810158482 34-35 22.25293459891339 27.08606772690427 28.84185408255594 21.8191435916264 36-37 22.27127212677811 26.95224125398025 28.786663422766644 21.98982319647499 38-39 22.106363844007497 27.192278991045622 28.86617335003973 21.835183814907147 40-41 22.31853774968591 27.033241110682717 28.77057594835598 21.877645191275395 42-43 22.213190363104676 27.168424204840562 28.511024815752023 22.107360616302742 44-45 22.24952306855686 27.255830471660637 28.3952724435941 22.0993740161884 46-47 22.378910145372263 27.207991067145688 28.19115034716251 22.22194844031954 48-49 22.314954418244 27.322057863536546 28.126733893787815 22.236253824431635 50-51 22.304752807742087 27.459127592934575 27.996375205117275 22.239744394206067 52-53 22.501394409628418 27.353040297400238 27.865926995216796 22.279638297754552 54-55 22.499743379026523 27.27562729353635 27.874017777238368 22.350611550198764 56-57 22.407069753635938 27.397847843883554 27.91637468557485 22.27870771690566 58-59 22.397433921870306 27.342608508382217 27.969372844019535 22.290584725727943 60-61 22.399284518689374 27.40534563135157 27.9649481171786 22.230421732780457 62-63 22.388761958134406 27.455571242280875 28.00019398851157 22.155472811073153 64-65 22.378948971332083 27.385407144667155 27.960038360653332 22.275605523347426 66-67 22.42640504442366 27.550725537760112 27.745325651741876 22.277543766074352 68-69 22.350719516000186 27.512921340441082 27.856267191265342 22.280091952293386 70-71 22.396681331624347 27.188261627016896 28.017006806522016 22.39805023483674 72-73 22.518816672852203 27.347882297815175 27.685889240040236 22.44741178929239 74-75 22.268564613032652 27.52652575795203 27.72685019582469 22.478059433190634 76-77 22.56644303280496 27.287661278106828 27.670261170348414 22.475634518739803 78-79 22.47836547754262 27.32363234231643 27.597685613055887 22.600316567085066 80-81 22.52286649961667 27.403509029762823 27.500300053152273 22.57332441746824 82-83 22.62262856467842 27.284816620167106 27.582464660550915 22.510090154603553 84-85 22.62584974889527 27.351811362453926 27.478405073440975 22.54393381520983 86-87 22.539059812804254 27.373978739160172 27.63864665487757 22.44831479315801 88-89 22.67155374795512 27.376128129279824 27.487766015827543 22.464552106937514 90-91 22.685445049176657 27.419959005911466 27.458214358943888 22.436381585967986 92-93 22.793178500131578 27.41300060844889 27.408810189088484 22.385010702331044 94-95 22.611510095473413 27.39960527700187 27.512721161972188 22.476163465552528 96-97 22.780751177658324 27.41675289202773 27.575431283186518 22.227064647127428 98-99 23.791654786331815 29.374671650868006 27.7530686248957 19.08060493790448 100 30.4517719922767 40.45724805645961 29.09097995126369 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1413.0 1 1256.0 2 1704.5 3 2537.5 4 3223.0 5 4633.5 6 5919.0 7 7182.0 8 8539.0 9 8977.0 10 8476.5 11 8001.0 12 8790.0 13 10926.5 14 14958.0 15 19634.0 16 23022.5 17 24874.5 18 24887.0 19 23031.5 20 20704.5 21 19216.5 22 19562.0 23 22693.5 24 28577.0 25 37142.0 26 48171.5 27 60194.0 28 70859.0 29 82629.5 30 95028.5 31 106865.0 32 122250.5 33 139885.0 34 154507.5 35 168453.0 36 184959.0 37 197833.0 38 207381.0 39 215488.5 40 223278.0 41 228164.5 42 230682.5 43 235923.5 44 241086.5 45 244929.5 46 246492.0 47 247184.0 48 247784.0 49 247843.0 50 245826.0 51 241400.5 52 234497.5 53 224449.5 54 212033.5 55 197790.0 56 180990.0 57 163010.5 58 145403.0 59 124762.5 60 103753.0 61 84328.5 62 66447.5 63 50895.0 64 37344.5 65 27209.5 66 19935.5 67 14955.0 68 11355.0 69 8436.0 70 6166.0 71 4277.0 72 2900.0 73 1965.5 74 1247.5 75 777.0 76 483.0 77 289.5 78 178.0 79 107.0 80 74.5 81 59.5 82 43.5 83 27.0 84 16.0 85 9.5 86 5.0 87 2.0 88 1.5 89 2.0 90 1.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018785662129248623 3 0.00248297447273547 4 1.6335358373259672E-5 5 0.0 6 4.5739003445127084E-4 7 0.0 8 0.0 9 0.0 10-11 1.6335358373259672E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.613739103260419E-4 24-25 0.0012415812419292113 26-27 0.003006186699551735 28-29 0.0018630195281216669 30-31 0.0025021869604659364 32-33 0.0034969914408063355 34-35 0.0012063053828546585 36-37 8.230462835962348E-6 38-39 4.960002949548421E-5 40-41 3.3230382838102323E-5 42-43 6.34657122314294E-4 44-45 0.0 46-47 0.0 48-49 2.0477129051901246E-4 50-51 0.006093093182387334 52-53 0.0 54-55 0.0032299679736922157 56-57 0.04924521645451274 58-59 0.061361271310120126 60-61 0.039711401973722596 62-63 0.008638927149418057 64-65 0.0 66-67 0.0 68-69 5.163346143349241E-4 70-71 0.002989148274325591 72-73 0.010993563264006802 74-75 0.0050595926031224234 76-77 0.004112674236224147 78-79 0.004098132743460572 80-81 0.016574882763561942 82-83 0.056762199366355175 84-85 0.03676403982447348 86-87 0.009801929209840084 88-89 0.008806281445891179 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 109.0 22-23 257.0 24-25 409.0 26-27 1155.0 28-29 2969.0 30-31 8942.0 32-33 11447.0 34-35 15508.0 36-37 25342.0 38-39 29406.0 40-41 30502.0 42-43 35261.0 44-45 43915.0 46-47 45278.0 48-49 42960.0 50-51 39029.0 52-53 36433.0 54-55 39787.0 56-57 42315.0 58-59 45991.0 60-61 45698.0 62-63 44710.0 64-65 47163.0 66-67 51084.0 68-69 52954.0 70-71 53620.0 72-73 49986.0 74-75 50571.0 76-77 53836.0 78-79 56691.0 80-81 56516.0 82-83 53294.0 84-85 52413.0 86-87 53533.0 88-89 57223.0 90-91 58196.0 92-93 57792.0 94-95 65414.0 96-97 193019.0 98-99 1443211.0 100-101 3027722.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.32400375192348 #Duplication Level Percentage of deduplicated Percentage of total 1 91.08967981724088 79.54315542122251 2 6.486142054921011 11.327917862788622 3 1.4016592827480445 3.671955013968258 4 0.4860315806915205 1.6976889430343853 5 0.2134106937044061 0.9317938108872076 6 0.10330869120662792 0.5412797123120329 7 0.06534970634604105 0.39946186015041507 8 0.038999337191206046 0.27244626137659245 9 0.023809711812549463 0.18712434272861578 >10 0.08882008146008381 1.196174739489428 >50 0.00235470722565402 0.14200895610970637 >100 3.7805504069353255E-4 0.057883470273991204 >500 5.628041124288969E-5 0.031109605658234247 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6335358373259672E-5 0.0 0.0 0.0 3 0.0 1.6335358373259672E-5 0.0 0.0 0.0 4 0.0 4.9006075119779014E-5 0.0 0.0 0.0 5 0.0 4.9006075119779014E-5 0.0 0.0 0.0 6 3.2670716746519345E-5 4.9006075119779014E-5 0.0 0.0 0.0 7 3.2670716746519345E-5 4.9006075119779014E-5 0.0 0.0 0.0 8 3.2670716746519345E-5 6.534143349303869E-5 0.0 1.6335358373259672E-5 0.0 9 3.2670716746519345E-5 2.286950172256354E-4 0.0 1.6335358373259672E-5 0.0 10-11 6.534143349303869E-5 2.286950172256354E-4 0.0 3.2670716746519345E-5 0.0 12-13 6.534143349303869E-5 2.286950172256354E-4 0.0 3.2670716746519345E-5 0.0 14-15 6.534143349303869E-5 3.5937788421171277E-4 0.0 3.2670716746519345E-5 0.0 16-17 9.801215023955803E-5 3.5937788421171277E-4 0.0 3.2670716746519345E-5 0.0 18-19 9.801215023955803E-5 3.920486009582321E-4 0.0 4.9006075119779014E-5 2.4503037559889507E-5 20-21 9.801215023955803E-5 4.2471931770475145E-4 0.0 4.9006075119779014E-5 4.9006075119779014E-5 22-23 1.143475086128177E-4 4.9822843038442E-4 0.0 4.9006075119779014E-5 4.9006075119779014E-5 24-25 1.388505461727072E-4 5.47234505504199E-4 0.0 6.534143349303869E-5 4.9006075119779014E-5 26-27 1.6335358373259672E-4 5.880729014373482E-4 0.0 1.3068286698607738E-4 4.9006075119779014E-5 28-29 1.6335358373259672E-4 5.880729014373482E-4 0.0 4.8189307201116033E-4 4.9006075119779014E-5 30-31 1.6335358373259672E-4 6.697496933036466E-4 0.0 0.001388505461727072 5.7173754306408855E-5 32-33 1.8785662129248623E-4 6.697496933036466E-4 0.0 0.0030138736198664093 7.350911267966852E-5 34-35 2.1235965885237572E-4 7.759295227298344E-4 0.0 0.005153805566763427 8.167679186629836E-5 36-37 2.286950172256354E-4 8.821093521560223E-4 0.0 0.009384663385437681 8.167679186629836E-5 38-39 2.286950172256354E-4 8.98444710529282E-4 0.0 0.022101739879020338 8.167679186629836E-5 40-41 2.286950172256354E-4 0.0010127922191420996 0.0 0.03598679449629105 8.167679186629836E-5 42-43 2.286950172256354E-4 0.0010209598983287294 0.0 0.04400745545756156 8.167679186629836E-5 44-45 2.4503037559889506E-4 0.001143475086128177 0.0 0.05367798761453128 8.167679186629836E-5 46-47 2.6136573397215476E-4 0.0012578225947409948 0.0 0.0644674918200693 8.167679186629836E-5 48-49 2.6136573397215476E-4 0.0012741579531142543 0.0 0.07518348691292764 8.167679186629836E-5 50-51 2.695334131587846E-4 0.001404840820100332 0.0 0.08602199719358543 8.167679186629836E-5 52-53 2.777010923454144E-4 0.0014211761784735915 0.0 0.122858230325286 8.167679186629836E-5 54-55 2.777010923454144E-4 0.0014211761784735915 0.0 0.16809900534002864 8.167679186629836E-5 56-57 2.777010923454144E-4 0.0014211761784735915 0.0 0.23446139873139607 8.167679186629836E-5 58-59 2.8586877153204425E-4 0.0014211761784735915 0.0 0.27480973391334745 8.167679186629836E-5 60-61 3.022041299053039E-4 0.0014783499327800003 0.0 0.289315532148802 8.167679186629836E-5 62-63 3.2670716746519343E-4 0.0014946852911532599 0.0 0.30165689539979973 8.167679186629836E-5 64-65 3.2670716746519343E-4 0.0016335358373259672 0.0 0.3082400448242234 8.167679186629836E-5 66-67 3.2670716746519343E-4 0.001641703516512597 0.0 0.3144719840436219 8.167679186629836E-5 68-69 3.2670716746519343E-4 0.0017315479875655254 0.0 0.321332834560391 8.167679186629836E-5 70-71 3.2670716746519343E-4 0.001747883345938785 0.0 0.32667449674844695 8.167679186629836E-5 72-73 3.2670716746519343E-4 0.0017642187043120446 0.0 0.33075016866257523 8.167679186629836E-5 74-75 3.2670716746519343E-4 0.0018132247794318236 0.0 0.3342214323168929 8.167679186629836E-5 76-77 3.4304252583845313E-4 0.001894901571298122 0.0 0.3375701807834111 8.167679186629836E-5 78-79 3.4304252583845313E-4 0.0019112369296713815 0.0 0.3400939936520797 8.167679186629836E-5 80-81 3.4304252583845313E-4 0.0019194046088580113 0.0 0.34097610300423575 8.167679186629836E-5 82-83 3.4304252583845313E-4 0.001943907646417901 0.0 0.3415968466224196 8.167679186629836E-5 84-85 3.4304252583845313E-4 0.0019602430047911605 0.0 0.3418582123563918 8.167679186629836E-5 86-87 3.4304252583845313E-4 0.00197657836316442 0.0 0.34203790129849765 8.167679186629836E-5 88 3.4304252583845313E-4 0.0020745905134039785 0.0 0.3420624043360575 8.167679186629836E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7440 0.0 55.063473 1 GTATCAA 13850 0.0 38.114677 1 TCAACGC 16885 0.0 30.70289 4 ATCAACG 17245 0.0 30.012585 3 CAACGCA 17460 0.0 29.617912 5 TATCAAC 17955 0.0 29.089386 2 AACGCAG 17915 0.0 28.913673 6 ACGCAGA 21010 0.0 24.633715 7 CGCAGAG 21880 0.0 23.673866 8 GTACATG 19825 0.0 22.680998 1 TACATGG 20255 0.0 21.796253 2 ACATGGG 19865 0.0 21.682995 3 GTGGTAT 3610 0.0 20.957966 1 GCAGAGT 25445 0.0 20.42459 9 TGGTATC 3340 0.0 20.206768 2 GAGTACT 14595 0.0 19.379889 12-13 CATGGGG 13710 0.0 18.781158 4 CAGAGTA 24715 0.0 18.610268 10-11 AGAGTAC 23130 0.0 18.07355 10-11 GTACTTT 16690 0.0 17.011631 14-15 >>END_MODULE