##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139173_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7421227 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.57713097847566 28.0 18.0 32.0 18.0 33.0 2 27.74870031599896 29.0 25.0 31.0 18.0 33.0 3 30.582366905095345 31.0 29.0 33.0 27.0 33.0 4 30.15040935953044 31.0 29.0 33.0 27.0 33.0 5 31.723375932308766 33.0 31.0 33.0 29.0 33.0 6 36.100580672171866 38.0 36.0 38.0 33.0 38.0 7 36.47332550264262 38.0 37.0 38.0 34.0 38.0 8 36.671100749242676 38.0 37.0 38.0 34.0 38.0 9 36.98255584959199 38.0 38.0 38.0 35.0 38.0 10-11 37.14507344944441 38.0 38.0 38.0 36.0 38.0 12-13 37.243046331826264 38.0 38.0 38.0 36.0 38.0 14-15 37.15757630106181 38.0 38.0 38.0 36.0 38.0 16-17 37.33977919015279 38.0 38.0 38.0 36.5 38.0 18-19 37.373253506461936 38.0 38.0 38.0 37.0 38.0 20-21 37.40863738202395 38.0 38.0 38.0 37.0 38.0 22-23 37.4300470239165 38.0 38.0 38.0 37.0 38.0 24-25 37.44833831124983 38.0 38.0 38.0 37.0 38.0 26-27 37.410190855513456 38.0 38.0 38.0 37.0 38.0 28-29 37.38783602539746 38.0 38.0 38.0 37.0 38.0 30-31 37.39524419965408 38.0 38.0 38.0 37.0 38.0 32-33 37.38685595401627 38.0 38.0 38.0 37.0 38.0 34-35 37.36252475610855 38.0 38.0 38.0 37.0 38.0 36-37 37.345108520518956 38.0 38.0 38.0 37.0 38.0 38-39 37.35652405328486 38.0 38.0 38.0 37.0 38.0 40-41 37.35476339609761 38.0 38.0 38.0 37.0 38.0 42-43 37.32144500383841 38.0 38.0 38.0 37.0 38.0 44-45 37.243977055375304 38.0 38.0 38.0 37.0 38.0 46-47 37.285618858399985 38.0 38.0 38.0 37.0 38.0 48-49 37.24805576456024 38.0 38.0 38.0 37.0 38.0 50-51 37.20784262889 38.0 38.0 38.0 37.0 38.0 52-53 37.191623502547905 38.0 38.0 38.0 37.0 38.0 54-55 37.17279118430405 38.0 38.0 38.0 36.0 38.0 56-57 37.13872838474357 38.0 38.0 38.0 36.0 38.0 58-59 37.131701949071854 38.0 38.0 38.0 36.0 38.0 60-61 37.14187050006358 38.0 38.0 38.0 36.0 38.0 62-63 37.15011256663417 38.0 38.0 38.0 36.0 38.0 64-65 37.112891321152816 38.0 38.0 38.0 36.0 38.0 66-67 37.143370604966066 38.0 38.0 38.0 36.0 38.0 68-69 37.13353891817815 38.0 38.0 38.0 36.0 38.0 70-71 37.13676844112753 38.0 38.0 38.0 36.0 38.0 72-73 37.12308398263008 38.0 38.0 38.0 36.0 38.0 74-75 37.11831469024989 38.0 38.0 38.0 36.0 38.0 76-77 37.10776708023795 38.0 38.0 38.0 36.0 38.0 78-79 37.08959018222423 38.0 38.0 38.0 36.0 38.0 80-81 37.06012110794238 38.0 38.0 38.0 36.0 38.0 82-83 37.0343887014126 38.0 38.0 38.0 36.0 38.0 84-85 37.01417261648905 38.0 38.0 38.0 36.0 38.0 86-87 37.009271715353094 38.0 38.0 38.0 36.0 38.0 88-89 36.994825657871516 38.0 38.0 38.0 36.0 38.0 90-91 36.974516307649935 38.0 38.0 38.0 36.0 38.0 92-93 36.95206265600992 38.0 38.0 38.0 35.5 38.0 94-95 36.9272437164912 38.0 38.0 38.0 35.0 38.0 96-97 36.93401729406955 38.0 38.0 38.0 35.0 38.0 98-99 36.93819962817986 38.0 38.0 38.0 35.0 38.0 100 35.627793892777085 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 4.0 20 20.0 21 94.0 22 464.0 23 1322.0 24 3248.0 25 6544.0 26 11614.0 27 19217.0 28 29344.0 29 41856.0 30 57300.0 31 75884.0 32 101491.0 33 141971.0 34 223612.0 35 441968.0 36 1422477.0 37 4842795.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.0860189292148 20.60525840268732 13.112454315169176 24.1962683529287 2 15.729835775042005 20.577647440723418 40.967532984660906 22.724983799573675 3 18.470692914088236 26.71455854928857 29.643697275617463 25.17105126100573 4 13.336797270855616 17.508371594077367 37.97275032821392 31.182080806853097 5 13.991284729600645 37.34971319432756 35.111134587312854 13.547867488758936 6 30.78036935041828 37.329897586519465 18.423538755436965 13.466194307625285 7 26.98109086273739 32.267938980979835 23.410966946570966 17.340003209711817 8 24.65850997415926 37.12224407096023 20.85230649864234 17.366939456238168 9 26.292687179626768 16.615742922295734 21.02560668202172 36.06596321605578 10-11 24.975160773648504 26.259598229429898 28.61223527030677 20.15300572661483 12-13 25.568332568185824 23.989078894905113 28.736562026737626 21.70602651017143 14-15 22.902149469353247 25.12481426588892 25.93166197449559 26.041374290262244 16-17 22.567380030283402 28.077365104180213 26.764219717305508 22.59103514823088 18-19 22.684510256861838 27.443292059385865 28.162054603638992 21.710143080113305 20-21 23.33015594405585 26.67850843807062 27.974992410243804 22.016343207629724 22-23 23.305737693486204 26.516682736966974 27.788701299865064 22.38887826968176 24-25 22.94870230462204 26.715118686313488 27.857110563197455 22.479068445867018 26-27 22.825489860471134 26.778389939581963 27.91013979840889 22.48598040153801 28-29 22.880609916289384 26.73745769712761 27.905889185347515 22.476043201235495 30-31 23.04582958538221 26.73090575618502 27.7273407133985 22.495923945034264 32-33 22.879574930101594 26.90631917258352 27.721251886117887 22.492854011196993 34-35 23.03857548346666 26.77003553335851 27.748898684085965 22.442490299088867 36-37 22.995982296285227 26.73711732904151 27.712021423037452 22.554878951635814 38-39 22.928012616958895 26.88867626571392 27.803392107151137 22.379919010176046 40-41 23.065596322320975 26.693828046706436 27.732537864410634 22.508037766561955 42-43 22.892458409703632 26.86274698506224 27.542846239161 22.701948366073122 44-45 22.948802209706656 26.87763526242184 27.475939419952 22.697623107919497 46-47 23.108289396587807 26.908104482908634 27.261014117018195 22.72259200348536 48-49 23.016496381499277 27.012154691118607 27.157515812329162 22.81383311505295 50-51 23.003743268381545 27.124962181718015 27.133424614199917 22.737869935700523 52-53 23.163072594913974 26.94330841521348 27.090828408139895 22.802790581732648 54-55 23.162263861837744 26.845694893671173 27.06096580840279 22.931075436088292 56-57 23.036441104943393 27.050661145677473 27.158270959212345 22.754626790166792 58-59 23.091235888285937 27.052425001129738 27.06481516213094 22.791523948453385 60-61 23.12309127358062 27.03251154508564 27.140655950936406 22.703741230397338 62-63 23.207003806596223 27.06750897199371 27.11222530603539 22.613261915374675 64-65 23.193807695558615 27.06731530983486 26.991470956323525 22.747406038282993 66-67 23.143091658863572 27.127711654107955 26.916353530073533 22.812843156954944 68-69 23.096226545872582 27.023603751271054 27.077039187478803 22.803130515377564 70-71 23.139393847725394 26.80593283286228 27.110302418108333 22.944370901303994 72-73 23.290504152165134 26.954154720348072 26.828701150019935 22.926639977466863 74-75 22.953239453278325 27.095692508879054 27.03244500678577 22.918623031056853 76-77 23.302102295894617 26.85750427811435 26.940441905936062 22.899951520054966 78-79 23.0361500930655 26.838490667457766 26.97443742025405 23.15092181922269 80-81 23.163056002062334 26.975113292097646 26.880909564093137 22.980921141746887 82-83 23.174431906838674 26.91096509053657 26.98823693670524 22.926366065919517 84-85 23.18075351315534 26.89313756789052 26.92307756729423 23.003031351659907 86-87 23.137547282311864 26.88394083222283 27.04419648325856 22.934315402206746 88-89 23.149788685459093 26.87653102231903 26.927716546625135 23.04596374559674 90-91 23.201924494376424 26.96463559044611 26.917140921268544 22.916298993908917 92-93 23.281107525244934 26.892572442661717 26.914482124876788 22.91183790721657 94-95 23.075487327418667 26.86339383149271 26.996429958091582 23.06468888299704 96-97 23.29267600686329 26.918806940747846 27.01301052460921 22.775506527779655 98-99 24.408691126419573 28.886718673855665 27.090102260012554 19.614487939712205 100 31.562882174584168 39.97942067273303 28.457697152682798 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 894.0 1 844.5 2 1199.5 3 1798.5 4 2369.0 5 3536.0 6 4533.0 7 5349.5 8 6148.5 9 6450.0 10 6347.5 11 6209.0 12 6887.0 13 8640.0 14 11939.0 15 15927.5 16 18950.0 17 20779.5 18 21161.0 19 20066.5 20 18644.5 21 17846.0 22 18517.0 23 21754.5 24 27368.5 25 35483.5 26 45721.5 27 57594.5 28 71547.5 29 87157.0 30 102419.0 31 118698.5 32 136883.5 33 155854.0 34 170899.5 35 185112.5 36 202937.5 37 220530.0 38 237616.0 39 249995.5 40 260404.5 41 270839.0 42 278249.0 43 285063.0 44 294300.0 45 303737.0 46 308869.5 47 313141.0 48 316125.0 49 316813.5 50 318372.0 51 318095.0 52 312086.0 53 301955.5 54 289762.5 55 274182.5 56 254274.5 57 231781.0 58 207400.5 59 177882.0 60 147910.5 61 120513.0 62 95463.0 63 73729.5 64 54466.0 65 39756.0 66 29349.5 67 22073.5 68 16501.5 69 12110.5 70 8810.5 71 6170.0 72 4333.5 73 2868.0 74 1812.5 75 1161.0 76 746.5 77 452.5 78 287.0 79 168.5 80 104.0 81 73.5 82 48.0 83 33.0 84 22.0 85 12.5 86 5.0 87 3.0 88 3.5 89 3.0 90 2.5 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0016978324473837009 3 0.0027758213028654154 4 0.0 5 0.0 6 4.8509498496677165E-4 7 0.0 8 0.0 9 0.0 10-11 2.0212291040282154E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 6.737596035167287E-5 24-25 0.0010915330656022827 26-27 0.0028233818332831437 28-29 0.0018198801278661257 30-31 0.0024016894401021013 32-33 0.00308907534646819 34-35 9.82566958211224E-4 36-37 6.801482015725299E-6 38-39 5.4713581921757115E-5 40-41 6.881059848362084E-6 42-43 5.608092380374889E-4 44-45 0.0 46-47 0.0 48-49 2.410626381412993E-4 50-51 0.0061820536911005725 52-53 0.0 54-55 0.003025251271784439 56-57 0.04757217667763614 58-59 0.059272220957866245 60-61 0.03875906084249363 62-63 0.008561010529667469 64-65 0.0 66-67 0.0 68-69 6.792267004015928E-4 70-71 0.0029314175376264203 72-73 0.010432377564829549 74-75 0.005142519728160207 76-77 0.00405320859617321 78-79 0.0038845054619066253 80-81 0.016756911324130475 82-83 0.05512113640359942 84-85 0.03634190321902531 86-87 0.00977867376144976 88-89 0.008585773458894285 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 24.0 20-21 103.0 22-23 265.0 24-25 450.0 26-27 1474.0 28-29 4201.0 30-31 13721.0 32-33 17138.0 34-35 23579.0 36-37 38289.0 38-39 44988.0 40-41 43835.0 42-43 48753.0 44-45 58238.0 46-47 59707.0 48-49 56944.0 50-51 52983.0 52-53 50910.0 54-55 56122.0 56-57 59130.0 58-59 59545.0 60-61 58827.0 62-63 55948.0 64-65 58626.0 66-67 63288.0 68-69 64617.0 70-71 64164.0 72-73 59790.0 74-75 60298.0 76-77 62942.0 78-79 66814.0 80-81 65764.0 82-83 61986.0 84-85 61178.0 86-87 63377.0 88-89 66462.0 90-91 67946.0 92-93 66746.0 94-95 77217.0 96-97 235142.0 98-99 1756770.0 100-101 3592926.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.66160116500566 #Duplication Level Percentage of deduplicated Percentage of total 1 88.49375266467122 73.1503528836171 2 7.704142394319452 12.736734918352926 3 2.0596024380369773 5.107501058744577 4 0.7669140806624235 2.5357738345417697 5 0.37807554824292494 1.5626165089548758 6 0.203699631639672 1.0102882624834282 7 0.11460158801617044 0.6631205533028282 8 0.06713776843309142 0.44397723498597674 9 0.044431949437154575 0.3305534475021992 >10 0.16250582565592375 2.073545484917125 >50 0.0037027732088975246 0.2130632495553253 >100 0.0014333376760303639 0.17247256304188044 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.3474860693521435E-5 2 0.0 8.084916416112862E-5 0.0 0.0 1.3474860693521435E-5 3 0.0 8.084916416112862E-5 0.0 0.0 1.3474860693521435E-5 4 0.0 2.0212291040282152E-4 0.0 0.0 1.3474860693521435E-5 5 0.0 2.1559777109634296E-4 0.0 1.3474860693521435E-5 1.3474860693521435E-5 6 0.0 2.1559777109634296E-4 0.0 1.3474860693521435E-5 2.694972138704287E-5 7 0.0 2.1559777109634296E-4 0.0 1.3474860693521435E-5 2.694972138704287E-5 8 0.0 2.5602235317690727E-4 0.0 1.3474860693521435E-5 2.694972138704287E-5 9 0.0 5.120447063538145E-4 0.0 1.3474860693521435E-5 2.694972138704287E-5 10-11 0.0 5.120447063538145E-4 0.0 1.3474860693521435E-5 2.694972138704287E-5 12-13 0.0 5.120447063538145E-4 0.0 1.3474860693521435E-5 3.3687151733803586E-5 14-15 0.0 6.939553257163539E-4 0.0 1.3474860693521435E-5 8.758659450788933E-5 16-17 0.0 7.006927560631146E-4 0.0 1.3474860693521435E-5 1.3474860693521434E-4 18-19 0.0 8.017542112645254E-4 0.0 1.3474860693521435E-5 1.5496089797549653E-4 20-21 0.0 9.29765387852979E-4 0.0 1.3474860693521435E-5 1.886480497093001E-4 22-23 0.0 0.0010173519823608683 0.0 1.3474860693521435E-5 2.2233520144310367E-4 24-25 0.0 0.00121947489276369 0.0 1.3474860693521435E-5 2.5602235317690727E-4 26-27 0.0 0.0013474860693521436 0.0 2.0212291040282154E-5 2.694972138704287E-4 28-29 0.0 0.0013474860693521436 0.0 2.3581006213662512E-4 2.964469352574716E-4 30-31 0.0 0.0015293966887146829 0.0 0.0011386257286025612 3.031843656042323E-4 32-33 0.0 0.0015563464101017257 0.0 0.0027623464421718943 3.368715173380359E-4 34-35 0.0 0.0017584693205045473 0.0 0.004594927496490809 4.0424582080564303E-4 36-37 0.0 0.0019605922309073685 0.0 0.007593084000799329 4.0424582080564303E-4 38-39 0.0 0.002034703964721737 0.0 0.012619207039482824 4.0424582080564303E-4 40-41 0.0 0.0022637765965116013 0.0 0.017840715558222378 4.1098325115240374E-4 42-43 0.0 0.0023917877731000547 0.0 0.022893788318292918 4.244581118459252E-4 44-45 0.0 0.002674759847664005 0.0 0.02883620188413587 4.311955421926859E-4 46-47 0.0 0.002883620188413587 0.0 0.035203073561824755 4.311955421926859E-4 48-49 0.0 0.002890357618760348 0.0 0.0420213530727466 4.581452635797288E-4 50-51 0.0 0.003247441427138666 0.0 0.04923040354378057 4.7162012427325023E-4 52-53 0.0 0.003274391148525709 0.0 0.05546926404488099 5.187821367005753E-4 54-55 0.0 0.003294603439565991 0.0 0.06180918600118282 5.72681579474661E-4 56-57 0.0 0.0033552403126868376 0.0 0.06822321969129902 6.063687312084646E-4 58-59 0.0 0.0033754526037271197 0.0 0.07493370031667271 6.19843591901986E-4 60-61 0.0 0.003436089476847966 0.0 0.08132078428540186 6.333184525955074E-4 62-63 0.0 0.0034765140589285305 0.0 0.08751922020442171 6.333184525955074E-4 64-65 0.0 0.003914447031467977 0.0 0.09338752203645032 6.333184525955074E-4 66-67 0.0 0.0039818213349355844 0.0 0.10028665071153328 6.400558829422682E-4 68-69 0.0 0.004082882790136995 0.0 0.10626275142911004 6.602681739825504E-4 70-71 0.0 0.0041502570936046024 0.0 0.11197609236316314 6.872178953695932E-4 72-73 0.0 0.004170469384644884 0.0 0.11583663995185703 7.41117338143679E-4 74-75 0.0 0.0043052179915800985 0.0 0.1188415338865123 7.478547684904397E-4 76-77 0.0 0.004547765484063484 0.0 0.12192727698532871 7.680670595307218E-4 78-79 0.0 0.004675776660651938 0.0 0.12433253961912227 7.680670595307218E-4 80-81 0.0 0.00468925152134546 0.0 0.12518819327316089 7.748044898774826E-4 82-83 0.0 0.004729676103426023 0.0 0.12564633853674062 7.882793505710039E-4 84-85 0.0 0.004824000128280674 0.0 0.12588214859887725 7.950167809177647E-4 86-87 0.0 0.004985698456602931 0.0 0.12591583575061105 8.017542112645254E-4 88 0.0 0.005241720809779838 0.0 0.12592257318095781 8.219665023048076E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7700 0.0 48.806614 1 GTATCAA 14300 0.0 37.36477 1 TCAACGC 16615 0.0 31.18269 4 CAACGCA 17030 0.0 30.372766 5 ATCAACG 17295 0.0 29.982098 3 AACGCAG 17610 0.0 29.445 6 TATCAAC 17810 0.0 29.307108 2 ACGCAGA 20940 0.0 24.721622 7 CGCAGAG 21705 0.0 23.791412 8 GTACATG 22685 0.0 23.666418 1 TACATGG 23685 0.0 22.397358 2 ACATGGG 23460 0.0 22.103172 3 GCAGAGT 25945 0.0 19.952623 9 CATGGGG 17950 0.0 19.772467 4 GAGTACT 13280 0.0 18.303535 12-13 CAGAGTA 25385 0.0 17.522688 10-11 AGAGTAC 22870 0.0 17.48419 10-11 GTACTTT 14920 0.0 16.27734 14-15 ATGGGGG 11195 0.0 15.642207 5 AGTACTT 14655 0.0 15.132557 12-13 >>END_MODULE