##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139172_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6934668 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.788159865764303 28.0 18.0 32.0 18.0 33.0 2 27.728480296389098 29.0 25.0 31.0 18.0 33.0 3 30.625245505624783 31.0 29.0 33.0 27.0 33.0 4 30.11485365990124 31.0 29.0 33.0 25.0 33.0 5 31.752695875274778 33.0 31.0 33.0 29.0 33.0 6 36.135481323691344 38.0 36.0 38.0 33.0 38.0 7 36.5003537299839 38.0 37.0 38.0 34.0 38.0 8 36.692523275807865 38.0 37.0 38.0 34.0 38.0 9 36.991342051270514 38.0 38.0 38.0 35.0 38.0 10-11 37.15751006392807 38.0 38.0 38.0 36.0 38.0 12-13 37.25640910278618 38.0 38.0 38.0 36.0 38.0 14-15 37.16561975281297 38.0 38.0 38.0 36.0 38.0 16-17 37.35645715122916 38.0 38.0 38.0 36.5 38.0 18-19 37.38695147337984 38.0 38.0 38.0 37.0 38.0 20-21 37.42354446535424 38.0 38.0 38.0 37.0 38.0 22-23 37.44338542428904 38.0 38.0 38.0 37.0 38.0 24-25 37.458800970013755 38.0 38.0 38.0 37.0 38.0 26-27 37.421903940322125 38.0 38.0 38.0 37.0 38.0 28-29 37.400266722487686 38.0 38.0 38.0 37.0 38.0 30-31 37.40667831625072 38.0 38.0 38.0 37.0 38.0 32-33 37.395758575215666 38.0 38.0 38.0 37.0 38.0 34-35 37.36912000082718 38.0 38.0 38.0 37.0 38.0 36-37 37.34868337145952 38.0 38.0 38.0 37.0 38.0 38-39 37.35805407354937 38.0 38.0 38.0 37.0 38.0 40-41 37.353325519494405 38.0 38.0 38.0 37.0 38.0 42-43 37.31661644011855 38.0 38.0 38.0 37.0 38.0 44-45 37.23541313332558 38.0 38.0 38.0 37.0 38.0 46-47 37.27319418169173 38.0 38.0 38.0 37.0 38.0 48-49 37.2339046383397 38.0 38.0 38.0 37.0 38.0 50-51 37.19227715117026 38.0 38.0 38.0 37.0 38.0 52-53 37.17591530981227 38.0 38.0 38.0 37.0 38.0 54-55 37.1561063174712 38.0 38.0 38.0 36.0 38.0 56-57 37.119045546490504 38.0 38.0 38.0 36.0 38.0 58-59 37.109244855332236 38.0 38.0 38.0 36.0 38.0 60-61 37.12201534593884 38.0 38.0 38.0 36.0 38.0 62-63 37.131745399528526 38.0 38.0 38.0 36.0 38.0 64-65 37.09617754589621 38.0 38.0 38.0 36.0 38.0 66-67 37.12888778762192 38.0 38.0 38.0 36.0 38.0 68-69 37.1185476976391 38.0 38.0 38.0 36.0 38.0 70-71 37.1238830970606 38.0 38.0 38.0 36.0 38.0 72-73 37.11047508672953 38.0 38.0 38.0 36.0 38.0 74-75 37.10648402219579 38.0 38.0 38.0 36.0 38.0 76-77 37.100109268830906 38.0 38.0 38.0 36.0 38.0 78-79 37.08214175825723 38.0 38.0 38.0 36.0 38.0 80-81 37.05338852669307 38.0 38.0 38.0 36.0 38.0 82-83 37.025587358661184 38.0 38.0 38.0 36.0 38.0 84-85 37.00968560128001 38.0 38.0 38.0 36.0 38.0 86-87 37.00459446502019 38.0 38.0 38.0 36.0 38.0 88-89 36.991712639768274 38.0 38.0 38.0 36.0 38.0 90-91 36.97351601162185 38.0 38.0 38.0 36.0 38.0 92-93 36.95153236789665 38.0 38.0 38.0 35.5 38.0 94-95 36.92967867809332 38.0 38.0 38.0 35.0 38.0 96-97 36.934349882584115 38.0 38.0 38.0 35.0 38.0 98-99 36.93698947669539 38.0 38.0 38.0 35.0 38.0 100 35.62046557404259 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 6.0 20 29.0 21 111.0 22 358.0 23 1164.0 24 2856.0 25 6193.0 26 10870.0 27 18176.0 28 27961.0 29 40475.0 30 54815.0 31 72348.0 32 94986.0 33 131527.0 34 207453.0 35 409929.0 36 1316727.0 37 4538683.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.610759159631 21.10983539514797 13.421392343512336 23.858013101708693 2 15.277988478530347 21.029782543364135 41.66223474057082 22.0299942375347 3 17.960159100564397 27.280523620942414 30.331220125742632 24.428097152750556 4 12.756904872735076 18.12359293912845 39.26637872209599 29.853123466040483 5 13.322757484568836 37.87150300490232 35.881126536987786 12.924612973541056 6 29.600735439912036 38.50648016295041 18.97039854354057 12.922385853596985 7 26.086612942393206 32.98108864043672 24.004537780323442 16.927760636846635 8 23.97297174140132 37.58474089891542 21.396107210900364 17.046180148782895 9 25.97974409157007 16.907586635726467 21.48643597645915 35.62623329624432 10-11 24.16074022294508 26.778645118889983 29.408583756899663 19.652030901265274 12-13 25.007339933216706 24.521606513823013 29.384528574403273 21.086524978557012 14-15 22.222873539151404 25.824956580473646 26.821651735887 25.130518144487958 16-17 21.762015139008817 28.794824784690487 27.54845653750115 21.89470353879955 18-19 21.81893927726605 28.076499120073233 29.102308863236136 21.002252739424584 20-21 22.640113782829154 27.32364771853199 28.904377374140793 21.131861124498062 22-23 22.397614043760463 27.17641247226423 28.767311943819884 21.658661540155432 24-25 22.133663187135934 27.331377169911487 28.8100082766307 21.72495136632189 26-27 22.026508060044897 27.455009308816752 28.830829058739297 21.687653572399054 28-29 22.061808387261944 27.469135156803365 28.820034485552043 21.64902197038265 30-31 22.294592795495994 27.361448236128215 28.711141177608766 21.632817790767017 32-33 22.12621974533212 27.522494756322903 28.63805731293139 21.713228185413584 34-35 22.22029926457383 27.49541033833751 28.653452974972975 21.630837422115683 36-37 22.233819099817296 27.36113135208865 28.650810044527404 21.75423950356665 38-39 22.091778966277932 27.593331070761923 28.695778743921778 21.619111219038366 40-41 22.290145570561766 27.41043076426421 28.61596801635261 21.68345564882141 42-43 22.181844312816605 27.536668522007922 28.402262554247642 21.87922461092783 44-45 22.254700021172425 27.637362346634998 28.28009187684639 21.827845755346186 46-47 22.335534645304246 27.577612589631016 28.088998724897117 21.99785404016762 48-49 22.261128689390006 27.68277039365488 28.06379148867539 21.992309428279725 50-51 22.230539499367616 27.79415655289074 28.005369072174396 21.969934875567247 52-53 22.45217928699134 27.696307787527207 27.875833490218373 21.975679435263082 54-55 22.42713118575358 27.627991548234853 27.8588879704134 22.085989295598168 56-57 22.37517749387095 27.76863865405405 27.89930884465011 21.956875007424888 58-59 22.371697069542083 27.758562674157954 27.885132697482035 21.984607558817927 60-61 22.419988667232698 27.734177198081017 27.921779258777867 21.924054875908425 62-63 22.410722687475264 27.80843989552526 27.94401884046378 21.836818576535695 64-65 22.372498651108643 27.77583898779322 27.883144143710194 21.968518217387945 66-67 22.439494827532073 27.914126715575634 27.70452850392956 21.941849952962738 68-69 22.444623531589723 27.810007424814692 27.814726167958923 21.93064287563666 70-71 22.45268249463363 27.500950504796855 27.91265985885368 22.133707141715835 72-73 22.52037420909295 27.637618204516052 27.756585005193614 22.085422581197385 74-75 22.275884710353985 27.80139130747393 27.788223691093993 22.134500291078087 76-77 22.46721706740023 27.606563367778474 27.75223199301873 22.173987571802567 78-79 22.373736132845075 27.62894576747682 27.681744598652752 22.31557350102535 80-81 22.397153988999055 27.68497309235027 27.66471790674726 22.25315501190342 82-83 22.477684994231904 27.61091005749703 27.791486916600388 22.119918031670675 84-85 22.500491863466383 27.54822115110251 27.72011213861878 22.231174846812326 86-87 22.330270854501148 27.650726037793856 27.763445634648313 22.25555747305668 88-89 22.468178338819097 27.58675530218153 27.685971439978157 22.259094919021212 90-91 22.4986862947498 27.63092247704717 27.714121503600108 22.15626972460292 92-93 22.552150930494633 27.633365734092752 27.64096126586722 22.1735220695454 94-95 22.4175076678478 27.621880845662837 27.73191185319958 22.228699633289775 96-97 22.540424783303354 27.692292631483777 27.772067748576703 21.995214836636166 98-99 23.59914852726584 29.63509526478761 27.960570945619345 18.805185262327207 100 30.038619583658914 40.76335628027017 29.198024136070917 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 950.0 1 913.0 2 1212.5 3 1738.0 4 2369.0 5 3505.0 6 4484.0 7 5352.0 8 6208.5 9 6544.0 10 6428.5 11 6399.0 12 7128.5 13 9061.5 14 12931.0 15 17527.5 16 20936.5 17 23058.0 18 23698.5 19 22810.0 20 21447.0 21 20857.5 22 22102.0 23 26025.5 24 32971.5 25 42899.5 26 56015.0 27 70887.0 28 86069.0 29 103040.0 30 119706.0 31 135330.5 32 153034.5 33 171419.0 34 187448.5 35 203755.5 36 223217.5 37 238487.5 38 249359.0 39 259034.5 40 268567.0 41 276543.0 42 279348.0 43 281850.5 44 286463.0 45 289542.5 46 288698.5 47 287551.0 48 286572.0 49 283535.0 50 278736.0 51 271790.5 52 260999.5 53 246421.0 54 229546.0 55 212494.0 56 193453.5 57 173101.5 58 152484.5 59 129472.0 60 107616.5 61 86915.0 62 67977.0 63 51892.0 64 38105.0 65 27831.5 66 20221.5 67 14969.0 68 11262.5 69 8324.0 70 6060.0 71 4239.5 72 2866.0 73 1835.5 74 1216.0 75 773.0 76 476.5 77 298.5 78 175.5 79 101.5 80 67.0 81 48.5 82 36.0 83 27.5 84 19.0 85 10.5 86 4.0 87 2.0 88 2.5 89 3.0 90 2.5 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019611609380578853 3 0.002682175988814461 4 0.0 5 0.0 6 6.20072943650655E-4 7 0.0 8 0.0 9 0.0 10-11 7.210150507565755E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.3073285151987695E-4 24-25 0.0011032501533193228 26-27 0.0030143849623439855 28-29 0.0019115794248266702 30-31 0.0026784777669379245 32-33 0.003659843445495239 34-35 0.0012035459363395253 36-37 0.0 38-39 6.582908181084687E-5 40-41 1.4714052980007722E-5 42-43 5.846473961951148E-4 44-45 0.0 46-47 0.0 48-49 1.666623612223351E-4 50-51 0.006374985016876532 52-53 0.0 54-55 0.00305259599659008 56-57 0.04840245343255888 58-59 0.060622860097346416 60-61 0.03910159476490047 62-63 0.008559616849750032 64-65 0.0 66-67 0.0 68-69 6.835130959050402E-4 70-71 0.0027530818297430986 72-73 0.01020475269348778 74-75 0.005002256950508857 76-77 0.004109684746083128 78-79 0.004074592201230526 80-81 0.016448073144520063 82-83 0.05512154446378456 84-85 0.03638866919691118 86-87 0.00925487019503331 88-89 0.008525659911152592 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 28.0 20-21 154.0 22-23 329.0 24-25 519.0 26-27 1433.0 28-29 3743.0 30-31 12167.0 32-33 15374.0 34-35 21023.0 36-37 33927.0 38-39 40087.0 40-41 39295.0 42-43 44424.0 44-45 53763.0 46-47 54967.0 48-49 52085.0 50-51 48346.0 52-53 46781.0 54-55 52111.0 56-57 54605.0 58-59 54592.0 60-61 53384.0 62-63 51619.0 64-65 54693.0 66-67 58705.0 68-69 60045.0 70-71 59381.0 72-73 55847.0 74-75 56695.0 76-77 59345.0 78-79 61823.0 80-81 61439.0 82-83 57247.0 84-85 57193.0 86-87 58751.0 88-89 62197.0 90-91 62737.0 92-93 62191.0 94-95 70963.0 96-97 213614.0 98-99 1604948.0 100-101 3422098.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.65811270348414 #Duplication Level Percentage of deduplicated Percentage of total 1 89.64490889662818 75.89168800664315 2 7.093668826276025 12.010732299521353 3 1.7950972694080751 4.559086408417963 4 0.6638987758709649 2.248176695655572 5 0.3170252873212472 1.3419381251948292 6 0.16278291891919386 0.8268536817637938 7 0.09431417618930862 0.5589122110159525 8 0.05758253596035497 0.3899863055267327 9 0.04020414506337197 0.30632463395299525 >10 0.12800085842964096 1.6806106485449341 >50 0.002133546772327237 0.12000149089492226 >100 3.827631613060555E-4 0.06568949286777456 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4420301015131511E-5 0.0 0.0 0.0 3 0.0 1.4420301015131511E-5 0.0 0.0 0.0 4 0.0 5.7681204060526044E-5 0.0 0.0 0.0 5 0.0 5.7681204060526044E-5 0.0 0.0 0.0 6 0.0 7.210150507565755E-5 0.0 1.4420301015131511E-5 2.8840602030263022E-5 7 0.0 7.210150507565755E-5 0.0 1.4420301015131511E-5 2.8840602030263022E-5 8 0.0 1.2978270913618358E-4 0.0 1.4420301015131511E-5 2.8840602030263022E-5 9 0.0 2.5956541827236717E-4 0.0 5.7681204060526044E-5 2.8840602030263022E-5 10-11 0.0 2.5956541827236717E-4 0.0 8.652180609078907E-5 2.8840602030263022E-5 12-13 0.0 2.5956541827236717E-4 0.0 1.2257255862861783E-4 4.3260903045394535E-5 14-15 0.0 4.181887294388138E-4 0.0 1.442030101513151E-4 7.210150507565755E-5 16-17 0.0 4.398191809615111E-4 0.0 1.442030101513151E-4 7.210150507565755E-5 18-19 0.0 5.047105355296029E-4 0.0 1.730436121815781E-4 7.210150507565755E-5 20-21 0.0 5.696018900976946E-4 0.0 1.946740637042754E-4 7.210150507565755E-5 22-23 0.0 6.056526426355235E-4 0.0 2.0188421421184116E-4 1.0094210710592056E-4 24-25 0.0 6.48913545680918E-4 0.0 2.0188421421184116E-4 1.442030101513151E-4 26-27 0.0 6.77754147711181E-4 0.0 2.3072481624210418E-4 1.5141316065888085E-4 28-29 0.0 6.77754147711181E-4 0.0 4.68659782991774E-4 1.586233111664466E-4 30-31 0.0 8.075368568473646E-4 0.0 0.0011896748337483496 1.586233111664466E-4 32-33 0.0 8.075368568473646E-4 0.0 0.0024947120756177513 1.730436121815781E-4 34-35 0.0 9.517398669986797E-4 0.0 0.0043405106055545845 1.730436121815781E-4 36-37 0.0 0.0010815225761348633 0.0 0.0074120347217775965 1.730436121815781E-4 38-39 0.0 0.0011031530276575606 0.0 0.012033741197127246 1.730436121815781E-4 40-41 0.0 0.00124014588730131 0.0 0.016489614210802882 1.8025376268914387E-4 42-43 0.0 0.00129061694085427 0.0 0.02123389324478115 1.946740637042754E-4 44-45 0.0 0.0014203996499904537 0.0 0.026353100105152835 2.090943647194069E-4 46-47 0.0 0.0015141316065888086 0.0 0.031991437802069256 2.3072481624210418E-4 48-49 0.0 0.0015213417570963744 0.0 0.03755046384340245 2.3072481624210418E-4 50-51 0.0 0.0017592767238460442 0.0 0.04321043199184157 2.3072481624210418E-4 52-53 0.0 0.0017592767238460442 0.0 0.04830079825018299 2.739857192874987E-4 54-55 0.0 0.0017809071753687416 0.0 0.0540689186562356 3.172466223328932E-4 56-57 0.0 0.0018169579279065703 0.0 0.060103814631068134 3.316669233480247E-4 58-59 0.0 0.0018169579279065703 0.0 0.06649921813127896 3.460872243631562E-4 60-61 0.0 0.0018313782289217017 0.0 0.07250527350408123 3.460872243631562E-4 62-63 0.0 0.0018746391319670963 0.0 0.0788285754992164 3.8934812740855075E-4 64-65 0.0 0.0020476827441486744 0.0 0.08433713048699663 3.8934812740855075E-4 66-67 0.0 0.002083733496686503 0.0 0.08993941743137523 3.8934812740855075E-4 68-69 0.0 0.002148624851254595 0.0 0.09561380588082949 3.9655827791611653E-4 70-71 0.0 0.0021846756037924237 0.0 0.10045902702191367 4.181887294388138E-4 72-73 0.0 0.002199095904807555 0.0 0.10481395792848339 4.3260903045394533E-4 74-75 0.0 0.0022423568078529495 0.0 0.10802247490435014 4.3260903045394533E-4 76-77 0.0 0.002357719215974002 0.0 0.1115049775995044 4.398191809615111E-4 78-79 0.0 0.002379349667496699 0.0 0.1136752329022817 4.4702933146907684E-4 80-81 0.0 0.002379349667496699 0.0 0.11451161036115931 4.5423948197664257E-4 82-83 0.0 0.002386559818004265 0.0 0.11505958179973433 5.047105355296029E-4 84-85 0.0 0.0024009801190193964 0.0 0.11531914721800668 5.047105355296029E-4 86-87 0.0 0.002451451172572357 0.0 0.11544171977663531 5.191308365447343E-4 88 0.0 0.0026100744837388033 0.0 0.115463350228158 5.335511375598659E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8160 0.0 51.885532 1 GTATCAA 14500 0.0 35.769547 1 TCAACGC 16720 0.0 29.997078 4 ATCAACG 16920 0.0 29.668394 3 CAACGCA 17130 0.0 29.279106 5 AACGCAG 17595 0.0 28.675285 6 TATCAAC 17930 0.0 28.259676 2 ACGCAGA 20505 0.0 24.45959 7 CGCAGAG 21220 0.0 23.615301 8 GTACATG 20190 0.0 20.652674 1 TACATGG 20070 0.0 20.137547 2 GCAGAGT 25165 0.0 20.032074 9 GAGTACT 14105 0.0 19.702213 12-13 ACATGGG 20215 0.0 19.527863 3 CAGAGTA 24430 0.0 18.772383 10-11 CATGGGG 14770 0.0 18.077843 4 AGAGTAC 22535 0.0 17.611607 10-11 GTGGTAT 4235 0.0 17.351532 1 GTACTTT 16390 0.0 17.033823 14-15 TGGTATC 3835 0.0 16.82187 2 >>END_MODULE