##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139171_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6041210 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.83700202442888 28.0 18.0 32.0 18.0 33.0 2 27.888805884913783 29.0 25.0 32.0 18.0 33.0 3 30.688679089122875 31.0 29.0 33.0 27.0 33.0 4 30.230532956146202 31.0 29.0 33.0 27.0 33.0 5 31.78309643266829 33.0 31.0 33.0 29.0 33.0 6 36.17033607505781 38.0 36.0 38.0 33.0 38.0 7 36.51577763395081 38.0 37.0 38.0 34.0 38.0 8 36.70911390267844 38.0 37.0 38.0 34.0 38.0 9 36.990608503925536 38.0 38.0 38.0 35.0 38.0 10-11 37.153496650505446 38.0 38.0 38.0 36.0 38.0 12-13 37.253635198908825 38.0 38.0 38.0 36.0 38.0 14-15 37.163825127747586 38.0 38.0 38.0 36.0 38.0 16-17 37.349124099311226 38.0 38.0 38.0 36.5 38.0 18-19 37.38078199565981 38.0 38.0 38.0 37.0 38.0 20-21 37.41569018084159 38.0 38.0 38.0 37.0 38.0 22-23 37.435546863018764 38.0 38.0 38.0 37.0 38.0 24-25 37.45049754218982 38.0 38.0 38.0 37.0 38.0 26-27 37.41252486135495 38.0 38.0 38.0 37.0 38.0 28-29 37.38799928390853 38.0 38.0 38.0 37.0 38.0 30-31 37.3927022710077 38.0 38.0 38.0 37.0 38.0 32-33 37.383744286529854 38.0 38.0 38.0 37.0 38.0 34-35 37.35530904562197 38.0 38.0 38.0 37.0 38.0 36-37 37.332822113217844 38.0 38.0 38.0 37.0 38.0 38-39 37.33898349439985 38.0 38.0 38.0 37.0 38.0 40-41 37.33503406962048 38.0 38.0 38.0 37.0 38.0 42-43 37.29572132282424 38.0 38.0 38.0 37.0 38.0 44-45 37.20851532618181 38.0 38.0 38.0 37.0 38.0 46-47 37.24449904426125 38.0 38.0 38.0 37.0 38.0 48-49 37.19988502158785 38.0 38.0 38.0 37.0 38.0 50-51 37.15744105781711 38.0 38.0 38.0 37.0 38.0 52-53 37.142397960347004 38.0 38.0 38.0 36.0 38.0 54-55 37.12214358907535 38.0 38.0 38.0 36.0 38.0 56-57 37.08496762966007 38.0 38.0 38.0 36.0 38.0 58-59 37.07557420100002 38.0 38.0 38.0 36.0 38.0 60-61 37.08721038088315 38.0 38.0 38.0 36.0 38.0 62-63 37.09758286109009 38.0 38.0 38.0 36.0 38.0 64-65 37.06179455618988 38.0 38.0 38.0 36.0 38.0 66-67 37.09321845525435 38.0 38.0 38.0 36.0 38.0 68-69 37.084037170443224 38.0 38.0 38.0 36.0 38.0 70-71 37.09025757453697 38.0 38.0 38.0 36.0 38.0 72-73 37.0782621572611 38.0 38.0 38.0 36.0 38.0 74-75 37.07841715985076 38.0 38.0 38.0 36.0 38.0 76-77 37.069172922591335 38.0 38.0 38.0 36.0 38.0 78-79 37.050577837685736 38.0 38.0 38.0 36.0 38.0 80-81 37.02500362046983 38.0 38.0 38.0 36.0 38.0 82-83 36.99545789978265 38.0 38.0 38.0 36.0 38.0 84-85 36.977792086165614 38.0 38.0 38.0 36.0 38.0 86-87 36.974266662111944 38.0 38.0 38.0 36.0 38.0 88-89 36.96151874821 38.0 38.0 38.0 36.0 38.0 90-91 36.94271464131974 38.0 38.0 38.0 36.0 38.0 92-93 36.92391733563619 38.0 38.0 38.0 35.0 38.0 94-95 36.89973982879012 38.0 38.0 38.0 35.0 38.0 96-97 36.904564563433084 38.0 38.0 38.0 35.0 38.0 98-99 36.910299651435146 38.0 38.0 38.0 35.0 38.0 100 35.592939419417796 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 25.0 21 88.0 22 365.0 23 1106.0 24 2706.0 25 5621.0 26 10028.0 27 16905.0 28 25986.0 29 37377.0 30 50343.0 31 65316.0 32 85971.0 33 117097.0 34 182841.0 35 355604.0 36 1128797.0 37 3955026.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.4189872558643 21.457456370495315 13.527935628789598 23.595620744850784 2 15.013587754947318 21.257995852080604 41.987213920111586 21.741202472860493 3 17.83420396027246 27.65370716244811 30.49869319053694 24.013395686742484 4 12.531746542786387 18.382992543379974 39.79806028892561 29.287200624908028 5 13.094164910671868 38.0093722946231 36.14189872558643 12.754564069118604 6 28.98370463852431 39.03108455700695 19.243301832245326 12.741908972223412 7 25.56037614981105 33.31372357524403 24.351595127466187 16.77430514747873 8 23.590356898700758 37.897739029101785 21.60017612365735 16.911727948540108 9 25.606856904494297 17.05539122129507 21.852244831747285 35.48550704246335 10-11 23.825504133361385 27.051274008232458 29.67414303991138 19.449078818494776 12-13 24.715942667114703 24.862693069765825 29.650136313751712 20.77122794936776 14-15 21.945413253305215 26.113882814866557 27.191845673300545 24.74885825852768 16-17 21.39836224862238 29.069044115334506 27.913514014576553 21.61907962146656 18-19 21.380791265325986 28.348468270429265 29.571898675927503 20.69884178831724 20-21 22.23829711089833 27.558352328692703 29.447506719933404 20.755843840475563 22-23 21.983232607919437 27.464939229542868 29.22692079190056 21.324907370637135 24-25 21.73360770771166 27.615771245866444 29.295921143605124 21.354699902816773 26-27 21.647956916470694 27.747505458620115 29.27193729523966 21.33260032966953 28-29 21.636287065454066 27.785187795650877 29.28621323760775 21.2923119012873 30-31 21.919445478058876 27.60642798598778 29.20500455388879 21.269121982064558 32-33 21.712896251359343 27.784158754002476 29.1178847145451 21.38506028009308 34-35 21.84795894075454 27.803158791377996 29.109754233479567 21.239128034387893 36-37 21.849821632882332 27.714220878670954 29.089285750066956 21.346671738379754 38-39 21.691003374293693 27.86389747410039 29.161045011532245 21.284054140073675 40-41 21.93416275423229 27.692069601418584 29.062505959574636 21.31126168477449 42-43 21.870644077371033 27.791830266605377 28.855396778085495 21.482128877938095 44-45 21.889008940769834 27.994963062113687 28.68656785800593 21.429460139110546 46-47 21.960146835337056 27.89446750656167 28.492212433180608 21.65317322492066 48-49 21.97868346331338 27.997287961827254 28.45202928369147 21.571999291167895 50-51 21.918871828035556 28.168141323495753 28.32718134779575 21.58580550067294 52-53 22.078121831408886 28.055532700344816 28.243038415371014 21.62330705287529 54-55 22.033990623056155 28.024451163495424 28.219115183545178 21.722443029903246 56-57 21.996047828519224 28.139496717479663 28.234486564271528 21.629968889729586 58-59 22.00358438324224 28.11966148012628 28.248723805181537 21.628030331449942 60-61 22.068152740312836 28.139177940237385 28.280037541956315 21.51263177749346 62-63 22.034378497624534 28.22118539032471 28.22876057124742 21.515675540803343 64-65 22.043114531530737 28.132462147322308 28.208159656015752 21.616263665131207 66-67 22.08788466999027 28.290810745390477 28.047675571506375 21.57362901311288 68-69 22.059954899809767 28.153985874694825 28.185382957509376 21.60067626798603 70-71 22.075983559506604 27.914082765201393 28.23899692544452 21.770936749847486 72-73 22.157050098828577 28.063745700207953 28.11414822649819 21.66505597446527 74-75 21.948125932978133 28.1304518269474 28.16206445732295 21.759357782751515 76-77 22.062623445692665 28.01048661110575 28.098095903478743 21.828794039722837 78-79 22.003952778786566 27.954845794497814 28.100051921177023 21.941149505538604 80-81 22.038365990915988 28.024818503632908 28.04913399665786 21.887681508793243 82-83 22.090446013945495 27.953583191792948 28.200440071057493 21.755530723204064 84-85 22.185448763235836 27.92694193760615 28.060602047481026 21.82700725167699 86-87 22.021479897292128 27.99052547718549 28.128592401058523 21.85940222446386 88-89 22.109015636521086 27.940382222394994 28.050291941552967 21.90031019953096 90-91 22.17096543777165 27.992289086731788 28.07065627399342 21.766089201503146 92-93 22.195155010117016 27.920837014592735 28.062674887333127 21.82133308795712 94-95 22.05002169867622 27.971121423057095 28.085309237653178 21.893547640613512 96-97 22.126844390197746 28.170035479309234 28.124948456472087 21.578171674020933 98-99 23.19687335370567 30.08817433884468 28.31070631859694 18.40424598885271 100 29.384134877201166 41.0091805044854 29.606684618313434 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1021.0 1 965.5 2 1264.0 3 1766.5 4 2384.0 5 3509.0 6 4380.0 7 5146.0 8 5968.0 9 6414.0 10 6408.5 11 6397.5 12 7207.5 13 9164.0 14 12956.0 15 17406.0 16 20761.5 17 22809.0 18 23359.5 19 22567.5 20 21344.5 21 20727.5 22 21933.5 23 25886.0 24 32616.0 25 42389.0 26 54875.0 27 68814.0 28 83631.0 29 99247.0 30 113851.5 31 128324.5 32 144468.5 33 160839.0 34 174938.0 35 187972.5 36 202047.5 37 214437.0 38 223940.0 39 230255.5 40 235574.5 41 239933.0 42 242169.5 43 244591.5 44 247859.0 45 249791.0 46 249082.5 47 248124.0 48 245213.0 49 239413.0 50 232559.5 51 224725.0 52 214173.5 53 200984.0 54 185659.0 55 169331.0 56 152834.0 57 135741.5 58 118741.5 59 100539.5 60 83036.5 61 66897.5 62 52189.0 63 39998.0 64 29625.0 65 21633.5 66 15773.5 67 11591.5 68 8556.0 69 6249.0 70 4532.0 71 3117.0 72 2161.5 73 1470.5 74 969.0 75 644.5 76 407.5 77 244.0 78 153.5 79 102.0 80 71.0 81 41.5 82 24.0 83 15.0 84 8.5 85 6.0 86 4.0 87 1.5 88 0.5 89 1.0 90 1.0 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018042743092857227 3 0.002665029025642214 4 1.655297531454791E-5 5 0.0 6 7.117779385255604E-4 7 0.0 8 0.0 9 0.0 10-11 1.655297531454791E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.9864185254715966E-4 24-25 0.0012415725161534791 26-27 0.0028393289945406242 28-29 0.0018216498782309858 30-31 0.002693310273072657 32-33 0.0035033030253346087 34-35 0.001164910467061699 36-37 8.348956317843098E-6 38-39 8.391044841995368E-5 40-41 0.0 42-43 5.855955213654526E-4 44-45 0.0 46-47 0.0 48-49 2.2574219910930808E-4 50-51 0.006867145920552283 52-53 0.0 54-55 0.002989419141667686 56-57 0.04995180473242397 58-59 0.06255318845975233 60-61 0.040852223170534135 62-63 0.009223099917770615 64-65 0.0 66-67 0.0 68-69 6.482300032787286E-4 70-71 0.0031104001444439483 72-73 0.011072781189785172 74-75 0.005223439125837669 76-77 0.0044041437146146055 78-79 0.004781596638084984 80-81 0.017393586040603586 82-83 0.05794873524777 84-85 0.03812336156212324 86-87 0.010397435844955403 88-89 0.00909714552248835 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 29.0 20-21 105.0 22-23 265.0 24-25 453.0 26-27 1206.0 28-29 3322.0 30-31 10012.0 32-33 12801.0 34-35 17784.0 36-37 28048.0 38-39 33721.0 40-41 33262.0 42-43 38070.0 44-45 45407.0 46-47 46692.0 48-49 44130.0 50-51 40603.0 52-53 38454.0 54-55 42201.0 56-57 45240.0 58-59 45388.0 60-61 44240.0 62-63 42545.0 64-65 44677.0 66-67 48197.0 68-69 49253.0 70-71 49063.0 72-73 46163.0 74-75 46267.0 76-77 48791.0 78-79 51325.0 80-81 51004.0 82-83 48158.0 84-85 46573.0 86-87 48454.0 88-89 50983.0 90-91 52388.0 92-93 52246.0 94-95 59356.0 96-97 183591.0 98-99 1398841.0 100-101 3051902.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.19865012301679 #Duplication Level Percentage of deduplicated Percentage of total 1 90.07635548971324 77.64460251214274 2 7.075002010403321 12.197112458287926 3 1.6573683414458555 4.285887413677679 4 0.5981035705122836 2.0622288164766176 5 0.24344481107498264 1.0492307047058176 6 0.13373330833162195 0.6916578392802605 7 0.06661823242985278 0.4019681196324283 8 0.04111924623447342 0.28355388155900396 9 0.028667821959540707 0.22240147993914483 >10 0.07816804256449439 1.0065800732018153 >50 8.305064126854984E-4 0.046441535361937375 >100 5.88618917669798E-4 0.10833516573464884 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.6552975314547915E-5 2 0.0 4.965892594364374E-5 0.0 0.0 3.310595062909583E-5 3 0.0 4.965892594364374E-5 0.0 0.0 3.310595062909583E-5 4 0.0 4.965892594364374E-5 0.0 0.0 4.965892594364374E-5 5 0.0 6.621190125819166E-5 0.0 0.0 4.965892594364374E-5 6 0.0 6.621190125819166E-5 0.0 0.0 4.965892594364374E-5 7 0.0 6.621190125819166E-5 0.0 0.0 4.965892594364374E-5 8 0.0 8.276487657273956E-5 0.0 1.6552975314547915E-5 4.965892594364374E-5 9 0.0 1.6552975314547912E-4 0.0 4.965892594364374E-5 4.965892594364374E-5 10-11 0.0 1.6552975314547912E-4 0.0 4.965892594364374E-5 4.965892594364374E-5 12-13 0.0 1.6552975314547912E-4 0.0 4.965892594364374E-5 4.965892594364374E-5 14-15 0.0 2.3174165440367078E-4 0.0 7.448838891546561E-5 7.448838891546561E-5 16-17 0.0 2.3174165440367078E-4 0.0 1.0759433954456144E-4 8.276487657273956E-5 18-19 0.0 2.896770680045885E-4 0.0 1.3242380251638332E-4 1.1587082720183539E-4 20-21 0.0 3.476124816055062E-4 0.0 1.4897677783093122E-4 1.1587082720183539E-4 22-23 0.0 3.889949198918759E-4 0.0 2.1518867908912288E-4 1.1587082720183539E-4 24-25 0.0 4.386538458355197E-4 0.0 2.2346516674639683E-4 1.1587082720183539E-4 26-27 0.0 4.5520682115006764E-4 0.0 2.7312409269004056E-4 1.3242380251638332E-4 28-29 0.0 4.6348330880734156E-4 0.0 4.4693033349279366E-4 1.3242380251638332E-4 30-31 0.0 5.628011606946291E-4 0.0 9.766255435583269E-4 1.3242380251638332E-4 32-33 0.0 5.793541360091769E-4 0.0 0.0026153700996985703 1.4897677783093122E-4 34-35 0.0 6.372895496100947E-4 0.0 0.004676215526359786 1.4897677783093122E-4 36-37 0.0 6.952249632110124E-4 0.0 0.007407456453260191 1.6552975314547912E-4 38-39 0.0 7.035014508682863E-4 0.0 0.011702953547385375 1.6552975314547912E-4 40-41 0.0 7.61436864469204E-4 0.0 0.016577804777519734 1.6552975314547912E-4 42-43 0.0 7.779898397837519E-4 0.0 0.02111332001370586 1.6552975314547912E-4 44-45 0.0 9.021371546428614E-4 0.0 0.026137148021671157 1.6552975314547912E-4 46-47 0.0 0.0010097314941874228 0.0 0.03215415454850932 1.6552975314547912E-4 48-49 0.0 0.0010097314941874228 0.0 0.037186259044131885 1.6552975314547912E-4 50-51 0.0 0.001133878809046532 0.0 0.04232595787929901 1.6552975314547912E-4 52-53 0.0 0.001142155296703806 0.0 0.04771395134418436 1.6552975314547912E-4 54-55 0.0 0.001142155296703806 0.0 0.053358515926445194 1.6552975314547912E-4 56-57 0.0 0.001175261247332902 0.0 0.058986527533391495 1.6552975314547912E-4 58-59 0.0 0.0011918142226474498 0.0 0.06464764509096688 1.6552975314547912E-4 60-61 0.0 0.0011918142226474498 0.0 0.07081362839563599 1.6552975314547912E-4 62-63 0.0 0.0012414731485910935 0.0 0.07662372273104229 1.6552975314547912E-4 64-65 0.0 0.0014235558770511205 0.0 0.08224345785033131 1.6552975314547912E-4 66-67 0.0 0.0014401088523656686 0.0 0.08779698106836213 1.6552975314547912E-4 68-69 0.0 0.0014483853400229425 0.0 0.09373122271862755 1.6552975314547912E-4 70-71 0.0 0.0014566618276802164 0.0 0.09878815667722195 1.8208272846002705E-4 72-73 0.0 0.0014566618276802164 0.0 0.10282708265397164 1.8208272846002705E-4 74-75 0.0 0.0014649383153374903 0.0 0.10616250717985304 1.8208272846002705E-4 76-77 0.0 0.0014814912906520382 0.0 0.10917514868710076 1.8208272846002705E-4 78-79 0.0 0.0014897677783093123 0.0 0.11153394766942384 1.8208272846002705E-4 80-81 0.0 0.0014980442659665862 0.0 0.11219606668200575 1.8208272846002705E-4 82-83 0.0 0.001514597241281134 0.0 0.11274231486738584 1.8208272846002705E-4 84-85 0.0 0.001531150216595682 0.0 0.11295750354647496 1.9863570377457495E-4 86-87 0.0 0.0015890856301965996 0.0 0.11308165086133407 1.9863570377457495E-4 88 0.0 0.001704956457398435 0.0 0.11312303329962044 1.9863570377457495E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7210 0.0 50.121315 1 GTATCAA 13160 0.0 36.18998 1 TCAACGC 15080 0.0 30.756584 4 ATCAACG 15210 0.0 30.466032 3 CAACGCA 15310 0.0 30.238537 5 AACGCAG 15860 0.0 29.243967 6 TATCAAC 16065 0.0 29.138828 2 ACGCAGA 18700 0.0 24.710537 7 CGCAGAG 19345 0.0 23.864483 8 GTACATG 17000 0.0 20.62693 1 GCAGAGT 22760 0.0 20.340261 9 TACATGG 17040 0.0 20.12568 2 ACATGGG 16675 0.0 19.948732 3 TATACCG 345 0.0 19.87985 5 GAGTACT 13550 0.0 19.059996 12-13 CAGAGTA 22080 0.0 18.607931 10-11 AGAGTAC 20490 0.0 17.855276 10-11 GTGGTAT 3535 0.0 17.58364 1 CATGGGG 11870 0.0 16.756353 4 GTACTTT 15675 0.0 16.626575 14-15 >>END_MODULE