##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139170_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6250802 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.800562871772293 28.0 18.0 32.0 18.0 33.0 2 27.699631023347084 29.0 25.0 31.0 18.0 33.0 3 30.60123868905142 31.0 29.0 33.0 27.0 33.0 4 30.06586370836894 31.0 29.0 33.0 25.0 33.0 5 31.71050594787677 33.0 31.0 33.0 29.0 33.0 6 36.09311925093772 38.0 36.0 38.0 33.0 38.0 7 36.423086189580154 38.0 37.0 38.0 34.0 38.0 8 36.65996187369237 38.0 37.0 38.0 34.0 38.0 9 36.960342368867224 38.0 38.0 38.0 35.0 38.0 10-11 37.133857703379505 38.0 38.0 38.0 36.0 38.0 12-13 37.23675705933415 38.0 38.0 38.0 36.0 38.0 14-15 37.15033718873194 38.0 38.0 38.0 36.0 38.0 16-17 37.34520586318364 38.0 38.0 38.0 36.5 38.0 18-19 37.37748436120677 38.0 38.0 38.0 37.0 38.0 20-21 37.41427930754654 38.0 38.0 38.0 37.0 38.0 22-23 37.43628253359033 38.0 38.0 38.0 37.0 38.0 24-25 37.45310385536112 38.0 38.0 38.0 37.0 38.0 26-27 37.413012715364374 38.0 38.0 38.0 37.0 38.0 28-29 37.38958947791147 38.0 38.0 38.0 37.0 38.0 30-31 37.399548674760474 38.0 38.0 38.0 37.0 38.0 32-33 37.38764255852827 38.0 38.0 38.0 37.0 38.0 34-35 37.35805219732394 38.0 38.0 38.0 37.0 38.0 36-37 37.335605013698334 38.0 38.0 38.0 37.0 38.0 38-39 37.346216757876945 38.0 38.0 38.0 37.0 38.0 40-41 37.3419969664741 38.0 38.0 38.0 37.0 38.0 42-43 37.30154844291456 38.0 38.0 38.0 37.0 38.0 44-45 37.21616781455472 38.0 38.0 38.0 37.0 38.0 46-47 37.24771569108037 38.0 38.0 38.0 37.0 38.0 48-49 37.20239220622875 38.0 38.0 38.0 37.0 38.0 50-51 37.163260684121084 38.0 38.0 38.0 37.0 38.0 52-53 37.14554708441193 38.0 38.0 38.0 36.5 38.0 54-55 37.13020220879949 38.0 38.0 38.0 36.0 38.0 56-57 37.09826163904883 38.0 38.0 38.0 36.0 38.0 58-59 37.09200721490792 38.0 38.0 38.0 36.0 38.0 60-61 37.10504402562877 38.0 38.0 38.0 36.0 38.0 62-63 37.11767833127311 38.0 38.0 38.0 36.0 38.0 64-65 37.086388068126936 38.0 38.0 38.0 36.0 38.0 66-67 37.1209799433591 38.0 38.0 38.0 36.0 38.0 68-69 37.11487664306789 38.0 38.0 38.0 36.0 38.0 70-71 37.12267507580243 38.0 38.0 38.0 36.0 38.0 72-73 37.11218558883334 38.0 38.0 38.0 36.0 38.0 74-75 37.11365213239668 38.0 38.0 38.0 36.0 38.0 76-77 37.105343079853 38.0 38.0 38.0 36.0 38.0 78-79 37.08967743752552 38.0 38.0 38.0 36.0 38.0 80-81 37.064389888531636 38.0 38.0 38.0 36.0 38.0 82-83 37.03804838954078 38.0 38.0 38.0 36.0 38.0 84-85 37.0214638128349 38.0 38.0 38.0 36.0 38.0 86-87 37.01968354726042 38.0 38.0 38.0 36.0 38.0 88-89 37.00872794041406 38.0 38.0 38.0 36.0 38.0 90-91 36.99227073675671 38.0 38.0 38.0 36.0 38.0 92-93 36.97584075640148 38.0 38.0 38.0 36.0 38.0 94-95 36.95186034057433 38.0 38.0 38.0 35.5 38.0 96-97 36.95554886598999 38.0 38.0 38.0 35.0 38.0 98-99 36.959647342010356 38.0 38.0 38.0 35.0 38.0 100 35.66472971118875 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 7.0 20 26.0 21 85.0 22 343.0 23 1032.0 24 2668.0 25 5389.0 26 9651.0 27 16276.0 28 25506.0 29 37478.0 30 50691.0 31 67182.0 32 87504.0 33 121176.0 34 191037.0 35 376476.0 36 1196620.0 37 4061652.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.89785566716079 21.13330417440834 13.462032551982931 23.50680760644794 2 15.250463869382571 21.10585692889192 41.82065253039588 21.82302667132962 3 17.959990644155045 27.634411079317022 30.318265111497418 24.087333165030515 4 12.587858740023878 18.20118733583104 39.41427666630244 29.796677257842635 5 13.181380565245867 38.001859601375955 35.845080359288296 12.971679474089884 6 29.173705792688782 38.60746249745632 19.209198985853916 13.009632724000989 7 25.87044030510005 33.06934054222162 24.23103467363068 16.829184479047647 8 23.912035607590834 37.48322215293334 21.603739808107825 17.001002431368008 9 26.026804240479862 16.783654321477467 21.590333528401636 35.59920790964103 10-11 23.999370320750067 26.88195265839109 29.500824814225822 19.61785220663302 12-13 24.919770295075736 24.71501256958707 29.489647888382965 20.87556924695423 14-15 22.214069490602967 25.831229336651525 27.02004478785282 24.93465638489269 16-17 21.55516204160682 28.883333690620823 27.780763172469708 21.78074109530265 18-19 21.62607294232004 28.06393483588186 29.433791055931703 20.876201165866394 20-21 22.518660509982215 27.239873122770376 29.294852935647736 20.946613431599673 22-23 22.290702446961934 27.125080301924836 29.10158554455764 21.482631706555587 24-25 21.95689866059079 27.31442349982633 29.213398475879448 21.515279363703428 26-27 21.858062346206793 27.41375079774257 29.222799328572176 21.50538752747847 28-29 21.858208310836048 27.34280088006107 29.284981991366642 21.51400881773624 30-31 22.062583048528776 27.30266388042774 29.141549534367574 21.49320353667591 32-33 21.862309908665644 27.487072340887863 29.081842716309346 21.56877503413714 34-35 22.005425738888746 27.46327282776806 29.068932171507655 21.462369261835534 36-37 22.01930483263304 27.370061003284036 28.995346238574747 21.615287925508177 38-39 21.85555663193949 27.535707684845818 29.140190461539913 21.46854522167478 40-41 22.082554598740938 27.406283769987795 29.006947528508174 21.504214102763097 42-43 21.98273859335363 27.471874444347577 28.804668604995754 21.74071835730304 44-45 22.014948479988732 27.574167162670154 28.69637385139606 21.714510505945057 46-47 22.131086925764887 27.57355684468355 28.450442156858742 21.844914072692823 48-49 22.066772697776617 27.6874359355679 28.38139354940892 21.864397817246566 50-51 22.045294385029727 27.786715124940386 28.31088036711142 21.857110122918467 52-53 22.28400655070759 27.651455236191254 28.18555899328753 21.87897921981363 54-55 22.228650898675077 27.618198879782106 28.212474024917505 21.94067619662531 56-57 22.130376425118996 27.751288895103766 28.21040125532003 21.90793342445721 58-59 22.126814721519615 27.70519120205137 28.24126002427082 21.926734052158196 60-61 22.199871124920556 27.74381223077466 28.254457665419107 21.801858978885672 62-63 22.190609119207696 27.742425065136562 28.274760127433552 21.79220568822219 64-65 22.186609942361248 27.66458929697386 28.27086083250866 21.877939928156234 66-67 22.26187920083276 27.75965551699177 28.111304685001524 21.867160597173942 68-69 22.218801494844648 27.690252393871273 28.238445049765787 21.85250106151829 70-71 22.25697841713319 27.43515642367474 28.36329503024208 21.94457012894999 72-73 22.34285756434605 27.632283259966478 28.05336268318878 21.97149649249869 74-75 22.100148294043535 27.77563553277225 28.104629068365977 22.019587104818243 76-77 22.26557811032699 27.601252541040992 28.049370564333614 22.0837987842984 78-79 22.176434156671952 27.593618620655285 28.033176353925743 22.196770868747016 80-81 22.24221108098678 27.716629378447657 27.90219991251591 22.13895962804965 82-83 22.30659005495647 27.616383149830348 28.01671395881727 22.060312836395912 84-85 22.308765895477613 27.618559411511857 27.965557720141028 22.107116972869505 86-87 22.17768721549418 27.69234475455335 28.037551004020095 22.092417025932377 88-89 22.310361158899827 27.637472944110087 27.956486101931382 22.095679795058707 90-91 22.327573100324717 27.715589380623275 27.917969009451603 22.038868509600405 92-93 22.359186769437343 27.701991774786507 27.864081935932422 22.074739519843735 94-95 22.266242590815796 27.614102330377545 27.977714570121705 22.141940508684954 96-97 22.397848924633287 27.729449891305 27.947299380143566 21.92540180391815 98-99 23.41401781921673 29.68094280363539 28.21042872722963 18.694610649918246 100 29.837720648313 40.626016658357706 29.536262693329295 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1121.0 1 1029.0 2 1456.0 3 2170.5 4 2781.0 5 3990.0 6 5075.5 7 6254.5 8 7537.5 9 8141.5 10 7894.5 11 7596.5 12 8491.0 13 10481.5 14 14170.0 15 18684.0 16 22185.0 17 24188.0 18 24262.0 19 22918.5 20 21235.0 21 20275.0 22 21211.0 23 24632.0 24 30884.5 25 40196.0 26 52094.5 27 65704.0 28 79709.0 29 94959.0 30 110084.0 31 124698.0 32 141700.5 33 159513.0 34 174332.5 35 189255.0 36 206081.5 37 218511.0 38 228578.0 39 236373.0 40 242853.5 41 248672.0 42 250532.0 43 253760.5 44 257923.5 45 258598.5 46 256528.5 47 254039.5 48 252226.0 49 249257.5 50 244618.0 51 238407.0 52 229419.5 53 216461.0 54 201073.0 55 186160.0 56 168897.0 57 150497.5 58 132627.0 59 113450.5 60 95123.5 61 77349.0 62 60757.5 63 46650.0 64 34454.0 65 25070.0 66 18252.5 67 13616.0 68 10261.0 69 7510.5 70 5394.5 71 3760.0 72 2572.5 73 1696.0 74 1130.5 75 726.0 76 448.0 77 273.5 78 179.0 79 108.0 80 60.5 81 41.5 82 30.5 83 17.5 84 9.0 85 4.0 86 3.0 87 2.0 88 1.5 89 2.5 90 3.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019197536572107068 3 0.002623663331521299 4 1.5997947143422556E-5 5 0.0 6 4.1594662572898647E-4 7 0.0 8 0.0 9 0.0 10-11 7.998973571711278E-6 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.6798282543592743E-4 24-25 0.001167931605925157 26-27 0.002784071049493183 28-29 0.001712525402793577 30-31 0.0026510750349545446 32-33 0.003281808143088761 34-35 0.0012547135203505283 36-37 0.0 38-39 4.056721732337013E-5 40-41 1.63213930374243E-5 42-43 6.403045091228617E-4 44-45 0.0 46-47 0.0 48-49 2.437941771862453E-4 50-51 0.006100977274876481 52-53 0.0 54-55 0.0029839710876419824 56-57 0.04762693362489259 58-59 0.059211131062920266 60-61 0.03775672965837439 62-63 0.008509088436309029 64-65 0.0 66-67 0.0 68-69 6.312803243280433E-4 70-71 0.0026897558015999148 72-73 0.010334746837912892 74-75 0.004853983687975749 76-77 0.0037789937824605573 78-79 0.003953669914736367 80-81 0.016241349171793307 82-83 0.05532715572411921 84-85 0.03603620068786631 86-87 0.009866077284807356 88-89 0.008523610248180134 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 22.0 20-21 90.0 22-23 252.0 24-25 390.0 26-27 1292.0 28-29 3427.0 30-31 10879.0 32-33 13700.0 34-35 19049.0 36-37 30117.0 38-39 35947.0 40-41 35289.0 42-43 40851.0 44-45 49351.0 46-47 50344.0 48-49 47792.0 50-51 44268.0 52-53 41995.0 54-55 46733.0 56-57 49489.0 58-59 50430.0 60-61 49687.0 62-63 47431.0 64-65 49832.0 66-67 53324.0 68-69 55509.0 70-71 54751.0 72-73 50927.0 74-75 51532.0 76-77 54329.0 78-79 56527.0 80-81 55800.0 82-83 52775.0 84-85 51757.0 86-87 53589.0 88-89 56379.0 90-91 57544.0 92-93 56709.0 94-95 63735.0 96-97 189914.0 98-99 1434027.0 100-101 3083017.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.17020731770272 #Duplication Level Percentage of deduplicated Percentage of total 1 90.90473513868433 79.24184608199968 2 6.562905520431368 11.44179669644996 3 1.4799111870844557 3.870124949698185 4 0.49852137657944506 1.738248469949471 5 0.2270242086941461 0.9894873669003061 6 0.11628562177572442 0.6081985054954718 7 0.06258176132171912 0.38186855761048716 8 0.0410164888871976 0.28603326717930116 9 0.025197469477259885 0.19768217743928074 >10 0.07967277234881913 1.069201757540214 >50 0.001868543919033606 0.10828862577385749 >100 2.524490815167341E-4 0.05214233061472823 >500 2.7461714987262508E-5 0.015081213349057822 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.5997947143422556E-5 0.0 0.0 0.0 3 0.0 1.5997947143422556E-5 0.0 0.0 0.0 4 0.0 7.998973571711278E-5 0.0 0.0 0.0 5 0.0 7.998973571711278E-5 0.0 0.0 0.0 6 0.0 7.998973571711278E-5 0.0 0.0 0.0 7 0.0 7.998973571711278E-5 0.0 0.0 0.0 8 0.0 1.1198563000395789E-4 0.0 0.0 0.0 9 0.0 2.87963048581606E-4 0.0 1.5997947143422556E-5 0.0 10-11 0.0 2.87963048581606E-4 0.0 1.5997947143422556E-5 0.0 12-13 0.0 2.87963048581606E-4 0.0 1.5997947143422556E-5 0.0 14-15 0.0 3.5195483715529623E-4 0.0 1.5997947143422556E-5 0.0 16-17 0.0 3.5195483715529623E-4 0.0 1.5997947143422556E-5 0.0 18-19 0.0 4.399435464441203E-4 0.0 1.5997947143422556E-5 1.5997947143422556E-5 20-21 0.0 5.119343085895218E-4 0.0 1.5997947143422556E-5 1.5997947143422556E-5 22-23 0.0 5.679271235915007E-4 0.0 3.199589428684511E-5 1.5997947143422556E-5 24-25 0.0 6.079219914500571E-4 0.0 4.7993841430267665E-5 2.3996920715133833E-5 26-27 0.0 6.239199385934796E-4 0.0 5.5992815001978945E-5 3.199589428684511E-5 28-29 0.0 6.239199385934796E-4 0.0 2.3996920715133833E-4 3.199589428684511E-5 30-31 0.0 7.679014628842826E-4 0.0 0.001151852194326424 3.199589428684511E-5 32-33 0.0 7.918983835994165E-4 0.0 0.0033195740322601803 3.199589428684511E-5 34-35 0.0 9.118829871750857E-4 0.0 0.006359183989510466 3.199589428684511E-5 36-37 7.998973571711278E-6 0.0010238686171790436 0.0 0.010374668722509528 3.199589428684511E-5 38-39 1.5997947143422556E-5 0.0010238686171790436 0.0 0.017229789073466093 3.199589428684511E-5 40-41 1.5997947143422556E-5 0.0011038583528961564 0.0 0.02527675648660764 3.199589428684511E-5 42-43 1.5997947143422556E-5 0.001151852194326424 0.0 0.033019762904024155 4.7993841430267665E-5 44-45 1.5997947143422556E-5 0.0013118316657606496 0.0 0.04121871081502822 6.399178857369022E-5 46-47 1.5997947143422556E-5 0.00143981524290803 0.0 0.05041753042249618 6.399178857369022E-5 48-49 1.5997947143422556E-5 0.00143981524290803 0.0 0.05954435926781875 6.399178857369022E-5 50-51 1.5997947143422556E-5 0.0015997947143422556 0.0 0.06828723738169917 6.399178857369022E-5 52-53 1.5997947143422556E-5 0.001615792661485678 0.0 0.0772380888084441 7.998973571711278E-5 54-55 1.5997947143422556E-5 0.0016477885557725233 0.0 0.0855330244023087 9.598768286053533E-5 56-57 1.5997947143422556E-5 0.001695782397202791 0.0 0.09170023302609809 9.598768286053533E-5 58-59 1.5997947143422556E-5 0.001695782397202791 0.0 0.09742749810344337 9.598768286053533E-5 60-61 1.5997947143422556E-5 0.001695782397202791 0.0 0.10364270056866304 9.598768286053533E-5 62-63 1.5997947143422556E-5 0.0017437762386330587 0.0 0.10978591227173728 1.1198563000395789E-4 64-65 1.5997947143422556E-5 0.001959748525069263 0.0 0.11572914963551878 1.1198563000395789E-4 66-67 1.5997947143422556E-5 0.0019677474986409746 0.0 0.12178437262930421 1.1198563000395789E-4 68-69 1.5997947143422556E-5 0.002007742366499531 0.0 0.12750363873307777 1.1198563000395789E-4 70-71 1.5997947143422556E-5 0.002039738260786376 0.0 0.1323430177439631 1.1198563000395789E-4 72-73 1.5997947143422556E-5 0.002071734155073221 0.0 0.13643849221267929 1.7597741857764811E-4 74-75 1.5997947143422556E-5 0.0021277269700751998 0.0 0.13960608574707695 1.7597741857764811E-4 76-77 1.5997947143422556E-5 0.00219171875864889 0.0 0.14267769159861407 1.7597741857764811E-4 78-79 3.199589428684511E-5 0.0022557105472225804 0.0 0.14470943088582874 1.7597741857764811E-4 80-81 3.199589428684511E-5 0.0022557105472225804 0.0 0.1451973682737031 1.7597741857764811E-4 82-83 3.199589428684511E-5 0.0022557105472225804 0.0 0.1457492974501512 2.0797331286449323E-4 84-85 3.199589428684511E-5 0.0022637095207942914 0.0 0.14594927178944397 2.0797331286449323E-4 86-87 3.199589428684511E-5 0.002303704388652848 0.0 0.1460292615251611 2.0797331286449323E-4 88 3.199589428684511E-5 0.0024956797543739186 0.0 0.1460292615251611 2.0797331286449323E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7730 0.0 52.99352 1 GTATCAA 14480 0.0 37.51378 1 TCAACGC 17350 0.0 30.839808 4 ATCAACG 17605 0.0 30.417831 3 CAACGCA 17795 0.0 30.092575 5 TATCAAC 18305 0.0 29.395193 2 AACGCAG 18455 0.0 29.016384 6 ACGCAGA 21175 0.0 25.228477 7 CGCAGAG 21780 0.0 24.429731 8 GTACATG 21140 0.0 23.959442 1 TACATGG 21485 0.0 23.177492 2 ACATGGG 21430 0.0 22.73864 3 GCAGAGT 25490 0.0 21.041445 9 TGGTATC 3695 0.0 20.093973 2 CATGGGG 14110 0.0 19.89814 4 GTGGTAT 3895 0.0 19.719505 1 GAGTACT 14210 0.0 19.352583 12-13 CAGAGTA 24995 0.0 18.778015 10-11 AGAGTAC 23175 0.0 18.301083 10-11 GTACTTT 16620 0.0 16.495064 14-15 >>END_MODULE