##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139169_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6014203 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.954779045536043 28.0 18.0 32.0 18.0 33.0 2 27.807240793169104 29.0 25.0 31.0 18.0 33.0 3 30.64565529297897 31.0 29.0 33.0 27.0 33.0 4 30.142051573583398 31.0 29.0 33.0 25.0 33.0 5 31.705632982458358 33.0 31.0 33.0 29.0 33.0 6 36.09489769467376 38.0 36.0 38.0 33.0 38.0 7 36.40685673563064 38.0 37.0 38.0 34.0 38.0 8 36.6562415668377 38.0 37.0 38.0 34.0 38.0 9 36.9512415859591 38.0 38.0 38.0 35.0 38.0 10-11 37.12714735435435 38.0 38.0 38.0 36.0 38.0 12-13 37.22680411685472 38.0 38.0 38.0 36.0 38.0 14-15 37.14622253355931 38.0 38.0 38.0 36.0 38.0 16-17 37.33802450632278 38.0 38.0 38.0 36.5 38.0 18-19 37.37042813486675 38.0 38.0 38.0 37.0 38.0 20-21 37.40644219994573 38.0 38.0 38.0 37.0 38.0 22-23 37.427525215326185 38.0 38.0 38.0 37.0 38.0 24-25 37.445758836517 38.0 38.0 38.0 37.0 38.0 26-27 37.40739751558543 38.0 38.0 38.0 37.0 38.0 28-29 37.38169748031682 38.0 38.0 38.0 37.0 38.0 30-31 37.39314878285113 38.0 38.0 38.0 37.0 38.0 32-33 37.383574912093366 38.0 38.0 38.0 37.0 38.0 34-35 37.35707573826222 38.0 38.0 38.0 37.0 38.0 36-37 37.33656549822118 38.0 38.0 38.0 37.0 38.0 38-39 37.350572657747065 38.0 38.0 38.0 37.0 38.0 40-41 37.350453610284674 38.0 38.0 38.0 37.0 38.0 42-43 37.315327637210345 38.0 38.0 38.0 37.0 38.0 44-45 37.23628907655173 38.0 38.0 38.0 37.0 38.0 46-47 37.27902094117999 38.0 38.0 38.0 37.0 38.0 48-49 37.242567562585236 38.0 38.0 38.0 37.0 38.0 50-51 37.20363123089297 38.0 38.0 38.0 37.0 38.0 52-53 37.18798991395344 38.0 38.0 38.0 37.0 38.0 54-55 37.168361182714676 38.0 38.0 38.0 36.0 38.0 56-57 37.132449824714094 38.0 38.0 38.0 36.0 38.0 58-59 37.12746782032421 38.0 38.0 38.0 36.0 38.0 60-61 37.136722341616604 38.0 38.0 38.0 36.0 38.0 62-63 37.14500470131245 38.0 38.0 38.0 36.0 38.0 64-65 37.106879669295196 38.0 38.0 38.0 36.0 38.0 66-67 37.13915701460239 38.0 38.0 38.0 36.0 38.0 68-69 37.13014756818947 38.0 38.0 38.0 36.0 38.0 70-71 37.13405292822172 38.0 38.0 38.0 36.0 38.0 72-73 37.121537832318815 38.0 38.0 38.0 36.0 38.0 74-75 37.119223486441555 38.0 38.0 38.0 36.0 38.0 76-77 37.10872058683222 38.0 38.0 38.0 36.0 38.0 78-79 37.093724530733326 38.0 38.0 38.0 36.0 38.0 80-81 37.06355221138052 38.0 38.0 38.0 36.0 38.0 82-83 37.03436008959385 38.0 38.0 38.0 36.0 38.0 84-85 37.019178469200455 38.0 38.0 38.0 36.0 38.0 86-87 37.01554885235984 38.0 38.0 38.0 36.0 38.0 88-89 37.00021918667467 38.0 38.0 38.0 36.0 38.0 90-91 36.97990542281924 38.0 38.0 38.0 36.0 38.0 92-93 36.95856370905568 38.0 38.0 38.0 35.5 38.0 94-95 36.935760239252055 38.0 38.0 38.0 35.0 38.0 96-97 36.94078845647316 38.0 38.0 38.0 35.0 38.0 98-99 36.944030504344425 38.0 38.0 38.0 35.0 38.0 100 35.62273009362942 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 2.0 20 17.0 21 86.0 22 360.0 23 1056.0 24 2528.0 25 5373.0 26 9278.0 27 15628.0 28 23889.0 29 34393.0 30 46908.0 31 61910.0 32 82501.0 33 115379.0 34 183160.0 35 363154.0 36 1149445.0 37 3919134.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.84727386155738 20.903235225016516 13.221785164218765 24.027705749207335 2 15.410929236331555 20.902351129156884 41.5633190662792 22.123400568232363 3 18.321206745927626 26.95311551701031 29.887008073417316 24.838669663644747 4 12.891968044970886 17.898683815408926 38.95785342760353 30.251494712016658 5 13.515024351522554 37.69615026296918 35.71208022077073 13.076745164737538 6 29.965910530689666 38.24668192174021 18.8250123790898 12.962395168480326 7 26.3641583099207 32.651092754933615 23.89669919688444 17.088049738261248 8 23.947163073810447 37.73956416170189 21.35985433148831 16.95341843299935 9 25.966882062344755 16.82038334921518 21.385975830879005 35.82675875756106 10-11 24.347153620713105 26.756966260860544 29.22541510910342 19.670465009322932 12-13 25.0742035145804 24.442332591700016 29.24005890722345 21.243404986496135 14-15 22.321004129724255 25.689688226353518 26.58782884448696 25.401478799435267 16-17 21.99677995571483 28.65575870984069 27.354264563401003 21.99319677104348 18-19 22.05857534240198 28.022308192789637 28.76751915424205 21.151597310566338 20-21 22.784969139497452 27.235815142929354 28.618152825997313 21.36106289157588 22-23 22.563879239913177 27.144173946111117 28.457263261442193 21.834683552533505 24-25 22.353957384355443 27.263923899185645 28.512272047840042 21.869846668618873 26-27 22.229218955072273 27.407533920803896 28.50924910246321 21.85399802166062 28-29 22.264548125858223 27.393526107904854 28.531859204199822 21.8100665620371 30-31 22.494369057690033 27.289337331380757 28.414393736529252 21.801899874399957 32-33 22.257387493763193 27.491051230169706 28.382071254415592 21.869490021651508 34-35 22.430431674154512 27.44437154475901 28.353503716866946 21.771693064219534 36-37 22.40109707223712 27.33070809073998 28.35140368607682 21.91679115094608 38-39 22.25151753337865 27.50620585833702 28.46163440008237 21.78064220820196 40-41 22.447223707697013 27.362383424391407 28.354012414658236 21.836380453253344 42-43 22.372628018231495 27.45673219454036 28.137627730298448 22.033012056929696 44-45 22.386397948318834 27.570870147669673 28.06816488183978 21.974567022171712 46-47 22.48254137034981 27.525961729125193 27.856162539084384 22.13533436144061 48-49 22.418147300290798 27.632309006293593 27.846372942290554 22.103170751125052 50-51 22.38803764025044 27.74937316985746 27.78288564108944 22.079703548802655 52-53 22.609616756459115 27.601763074676317 27.6925968890327 22.096023279831872 54-55 22.562762483167774 27.565770453888405 27.720079619708216 22.151387443235603 56-57 22.48664977079994 27.69916243797217 27.7191453439874 22.09504244724049 58-59 22.499780369094395 27.68415994653634 27.69596141691415 22.120098267455116 60-61 22.51960068943705 27.71752614799588 27.746579476750554 22.016293685816514 62-63 22.553370609041423 27.774054230206623 27.698329096001885 21.97424606475007 64-65 22.551694903966606 27.678660995269 27.69221325992694 22.077430840837454 66-67 22.57022088683139 27.855734930162836 27.534170879918314 22.039873303087465 68-69 22.545571129077096 27.778142125565342 27.61552384791252 22.06076289744504 70-71 22.567957803015233 27.531768760140054 27.678959741756753 22.221313695087964 72-73 22.689172274191254 27.626630344815567 27.526725892968646 22.157471488024534 74-75 22.42197885303381 27.74636733461559 27.60116331275438 22.23049049959622 76-77 22.605805742123607 27.517711659336264 27.612951972164133 22.263530626375992 78-79 22.503467437489675 27.524101593999433 27.573746785399088 22.398684183111804 80-81 22.554875956895025 27.61451194876618 27.501825200792247 22.32878689354655 82-83 22.606730026789954 27.498808469208264 27.62058561662088 22.2738758873809 84-85 22.630512367303844 27.507705021086963 27.54058279718231 22.32119981442688 86-87 22.483930180174326 27.553067444637424 27.608888787229606 22.354113587958643 88-89 22.585076152172135 27.53529576642078 27.538280498151725 22.34134758325536 90-91 22.621468964991582 27.582301476499875 27.533518183284222 22.262711375224317 92-93 22.639495976096743 27.536475513112602 27.53575491354795 22.288273597242707 94-95 22.50854844893769 27.537960728993138 27.573330994179795 22.38015982788938 96-97 22.647424849764793 27.633013839591523 27.61807023538223 22.101491075261457 98-99 23.739275548908996 29.537155583289405 27.8126722158267 18.9108966519749 100 30.23387118534308 40.688189741237416 29.077939073419497 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 840.0 1 777.5 2 1025.5 3 1481.0 4 2033.0 5 2971.5 6 3675.0 7 4326.0 8 5028.0 9 5339.5 10 5323.0 11 5335.0 12 5880.0 13 7283.5 14 10053.0 15 13463.5 16 16104.5 17 17699.5 18 18130.5 19 17482.0 20 16634.0 21 16528.0 22 17765.0 23 21058.5 24 26774.5 25 35001.0 26 45988.0 27 58606.0 28 71493.0 29 85500.5 30 99111.5 31 112229.5 32 126963.0 33 143076.5 34 157909.0 35 172201.0 36 188109.0 37 201300.0 38 212150.5 39 221256.5 40 229586.0 41 236900.0 42 240604.5 43 244490.0 44 249460.0 45 253312.0 46 254406.0 47 254164.5 48 252369.5 49 249234.0 50 244987.5 51 238518.5 52 229537.0 53 217671.0 54 203543.0 55 189073.0 56 173152.5 57 155231.0 58 137375.5 59 117353.5 60 97575.0 61 79505.0 62 62641.0 63 47762.5 64 35458.5 65 26374.5 66 19458.5 67 14514.0 68 10912.5 69 8116.5 70 5916.5 71 4150.5 72 2928.5 73 2018.0 74 1362.5 75 882.0 76 529.5 77 303.0 78 202.5 79 141.5 80 94.0 81 65.0 82 39.0 83 21.0 84 13.0 85 8.5 86 7.0 87 6.0 88 4.0 89 2.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0018955130047988071 3 0.0024109595236476056 4 1.662730705963866E-5 5 0.0 6 4.821919047295211E-4 7 0.0 8 0.0 9 0.0 10-11 1.662730705963866E-5 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 2.0784710966146528E-4 24-25 0.0010060249253068063 26-27 0.00256931389424255 28-29 0.0015885476856648377 30-31 0.0024887983265952656 32-33 0.003218893336131936 34-35 9.36198177773836E-4 36-37 8.388427828273783E-6 38-39 5.05963667255018E-5 40-41 1.6963388850829642E-5 42-43 6.057221462083585E-4 44-45 0.0 46-47 0.0 48-49 2.0950671643615106E-4 50-51 0.006228761287650354 52-53 0.0 54-55 0.0030444843808576753 56-57 0.04845239468962474 58-59 0.0603972033153089 60-61 0.038145996497528936 62-63 0.00871899170033269 64-65 0.0 66-67 0.0 68-69 7.023268372846336E-4 70-71 0.0028852625962800626 72-73 0.010792775325876476 74-75 0.0052173408386181706 76-77 0.004202907701779034 78-79 0.004136928134480668 80-81 0.016797894126511018 82-83 0.05560949586121744 84-85 0.036919820912115084 86-87 0.009959307185681719 88-89 0.00876425386617615 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 30.0 20-21 92.0 22-23 246.0 24-25 381.0 26-27 1090.0 28-29 2986.0 30-31 10544.0 32-33 13196.0 34-35 18271.0 36-37 29400.0 38-39 34714.0 40-41 33603.0 42-43 38046.0 44-45 45273.0 46-47 47086.0 48-49 45274.0 50-51 42357.0 52-53 40605.0 54-55 44297.0 56-57 47788.0 58-59 47704.0 60-61 46665.0 62-63 44795.0 64-65 47629.0 66-67 50912.0 68-69 52068.0 70-71 51421.0 72-73 48313.0 74-75 48730.0 76-77 51376.0 78-79 53835.0 80-81 53447.0 82-83 50523.0 84-85 49375.0 86-87 50867.0 88-89 53983.0 90-91 54910.0 92-93 53930.0 94-95 61408.0 96-97 185695.0 98-99 1396458.0 100-101 2964880.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.8765374141487 #Duplication Level Percentage of deduplicated Percentage of total 1 90.87189853805089 78.94635893235703 2 6.4928564138866465 11.281537663314372 3 1.4904868790965888 3.8846501735139762 4 0.5338767557670719 1.855254557877694 5 0.24197209480721463 1.0510848873849459 6 0.1259214066053535 0.6563769475315335 7 0.07673211204330911 0.4666354141958037 8 0.04131903544175589 0.2871723782777794 9 0.032835930714947024 0.2567404766956941 >10 0.09011689222161626 1.1663007513990904 >50 0.0016845847226372496 0.09697072045079554 >100 2.993566419773967E-4 0.0509170970013362 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.662730705963866E-5 2 0.0 3.325461411927732E-5 0.0 0.0 1.662730705963866E-5 3 0.0 3.325461411927732E-5 0.0 0.0 1.662730705963866E-5 4 0.0 9.976384235783195E-5 0.0 0.0 3.325461411927732E-5 5 0.0 1.1639114941747062E-4 0.0 0.0 3.325461411927732E-5 6 0.0 1.1639114941747062E-4 0.0 0.0 3.325461411927732E-5 7 0.0 1.1639114941747062E-4 0.0 0.0 3.325461411927732E-5 8 0.0 1.3301845647710928E-4 0.0 0.0 4.9881921178915976E-5 9 0.0 2.4940960589457987E-4 0.0 0.0 6.650922823855464E-5 10-11 0.0 2.4940960589457987E-4 0.0 9.976384235783195E-5 6.650922823855464E-5 12-13 0.0 2.5772325942439924E-4 0.0 9.976384235783195E-5 6.650922823855464E-5 14-15 0.0 3.3254614119277316E-4 0.0 1.0807749588765128E-4 1.0807749588765128E-4 16-17 0.0 3.4917344825241185E-4 0.0 1.1639114941747062E-4 1.1639114941747062E-4 18-19 0.0 3.907417159015085E-4 0.0 1.1639114941747062E-4 1.1639114941747062E-4 20-21 0.0 4.572509441400631E-4 0.0 1.1639114941747062E-4 1.1639114941747062E-4 22-23 0.0 4.988192117891597E-4 0.0 1.3301845647710928E-4 1.2470480294728993E-4 24-25 0.0 5.487011329680757E-4 0.0 1.6627307059638658E-4 1.3301845647710928E-4 26-27 0.0 5.985830541469918E-4 0.0 1.9121403118584459E-4 1.3301845647710928E-4 28-29 0.0 6.06896707676811E-4 0.0 3.9074171590150844E-4 1.3301845647710928E-4 30-31 0.0 7.31601510624101E-4 0.0 0.0011057159194659708 1.4133211000692862E-4 32-33 0.0 7.31601510624101E-4 0.0 0.003001228924264778 1.4964576353674794E-4 34-35 0.0 8.313653529819329E-4 0.0 0.005378933833793106 1.6627307059638658E-4 36-37 0.0 9.311291953397649E-4 0.0 0.0089039229304365 1.6627307059638658E-4 38-39 0.0 9.643838094590422E-4 0.0 0.01447407079541545 1.8290037765602524E-4 40-41 0.0 0.0010475203447572355 0.0 0.019986023085685665 1.8290037765602524E-4 42-43 0.0 0.0010807749588765128 0.0 0.02526519307712094 1.9121403118584459E-4 44-45 0.0 0.001188852454764164 0.0 0.031417296689187246 1.995276847156639E-4 46-47 0.0 0.001263675336532538 0.0 0.037694105104200834 1.995276847156639E-4 48-49 0.0 0.0012803026435921768 0.0 0.04453624195924215 1.995276847156639E-4 50-51 0.0 0.0015463395565463952 0.0 0.051353437853694 1.995276847156639E-4 52-53 0.0 0.0015795941706656725 0.0 0.05802930163813892 2.0784133824548322E-4 54-55 0.0 0.0016294760918445885 0.0 0.06506265252436608 2.1615499177530257E-4 56-57 0.0 0.0016793580130235045 0.0 0.07202118052882486 2.1615499177530257E-4 58-59 0.0 0.0016793580130235045 0.0 0.07843932105384538 2.1615499177530257E-4 60-61 0.0 0.0016959853200831433 0.0 0.08463299293356077 2.3278229883494123E-4 62-63 0.0 0.0017209262806726013 0.0 0.09016988618442046 2.4940960589457987E-4 64-65 0.0 0.0019287676189180844 0.0 0.09633030345001657 2.4940960589457987E-4 66-67 0.0 0.0019453949259777231 0.0 0.10225793841677774 2.4940960589457987E-4 68-69 0.0 0.001970335886567181 0.0 0.10792785012411453 2.4940960589457987E-4 70-71 0.0 0.001995276847156639 0.0 0.113290156650848 2.4940960589457987E-4 72-73 0.0 0.0020285314612759164 0.0 0.11825340780815013 2.4940960589457987E-4 74-75 0.0 0.002053472421865374 0.0 0.121894788054211 2.4940960589457987E-4 76-77 0.0 0.002095040689514471 0.0 0.12513711293084054 2.4940960589457987E-4 78-79 0.0 0.002119981650103929 0.0 0.12721552631329539 2.4940960589457987E-4 80-81 0.0 0.0021282953036337485 0.0 0.12783905032803183 2.5772325942439924E-4 82-83 0.0 0.002136608957163568 0.0 0.12825473300452278 2.6603691295421856E-4 84-85 0.0 0.002161549917753026 0.0 0.12848751530335772 2.6603691295421856E-4 86-87 0.0 0.0021781772248126645 0.0 0.1285623381851261 2.6603691295421856E-4 88 0.0 0.00222805914599158 0.0 0.1285623381851261 2.6603691295421856E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6125 0.0 50.041557 1 GTATCAA 11450 0.0 35.381252 1 TCAACGC 12780 0.0 30.796013 4 ATCAACG 13125 0.0 30.019289 3 CAACGCA 13145 0.0 30.005838 5 AACGCAG 13625 0.0 28.948755 6 TATCAAC 13925 0.0 28.448885 2 ACGCAGA 15885 0.0 24.829933 7 CGCAGAG 16260 0.0 24.204782 8 GTACATG 16460 0.0 22.796675 1 TACATGG 16680 0.0 22.009739 2 ACATGGG 16580 0.0 21.575333 3 GCAGAGT 20125 0.0 19.704737 9 GAGTACT 11060 0.0 18.988943 12-13 CATGGGG 11795 0.0 18.927713 4 CAGAGTA 19385 0.0 18.012678 10-11 AGAGTAC 17430 0.0 17.743195 10-11 GTACTTT 12575 0.0 16.684305 14-15 GTGGTAT 3540 0.0 15.797214 1 TGGTATC 3215 0.0 15.402438 2 >>END_MODULE