##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139168_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7468447 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 25.604989765609904 28.0 18.0 32.0 18.0 33.0 2 27.678687148747255 29.0 25.0 31.0 18.0 33.0 3 30.568286954436445 31.0 29.0 33.0 27.0 33.0 4 30.081935508145133 31.0 29.0 33.0 25.0 33.0 5 31.72065691836603 33.0 31.0 33.0 29.0 33.0 6 36.10144090197065 38.0 36.0 38.0 33.0 38.0 7 36.458718659983795 38.0 37.0 38.0 34.0 38.0 8 36.67250969311291 38.0 37.0 38.0 34.0 38.0 9 36.971064131538995 38.0 38.0 38.0 35.0 38.0 10-11 37.14114433696858 38.0 38.0 38.0 36.0 38.0 12-13 37.240892651444135 38.0 38.0 38.0 36.0 38.0 14-15 37.14799194531339 38.0 38.0 38.0 36.0 38.0 16-17 37.3415339895965 38.0 38.0 38.0 36.5 38.0 18-19 37.37272989953601 38.0 38.0 38.0 37.0 38.0 20-21 37.40774290360355 38.0 38.0 38.0 37.0 38.0 22-23 37.428727260033014 38.0 38.0 38.0 37.0 38.0 24-25 37.44612107320397 38.0 38.0 38.0 37.0 38.0 26-27 37.40855896455065 38.0 38.0 38.0 37.0 38.0 28-29 37.38477678212733 38.0 38.0 38.0 37.0 38.0 30-31 37.39372405191019 38.0 38.0 38.0 37.0 38.0 32-33 37.38247542879709 38.0 38.0 38.0 37.0 38.0 34-35 37.35701740115983 38.0 38.0 38.0 37.0 38.0 36-37 37.33538951181906 38.0 38.0 38.0 37.0 38.0 38-39 37.34757872861087 38.0 38.0 38.0 37.0 38.0 40-41 37.34639685000769 38.0 38.0 38.0 37.0 38.0 42-43 37.30892186052884 38.0 38.0 38.0 37.0 38.0 44-45 37.22699817805183 38.0 38.0 38.0 37.0 38.0 46-47 37.26358366913321 38.0 38.0 38.0 37.0 38.0 48-49 37.22279467016001 38.0 38.0 38.0 37.0 38.0 50-51 37.18160771609365 38.0 38.0 38.0 37.0 38.0 52-53 37.16309253819048 38.0 38.0 38.0 36.5 38.0 54-55 37.14519690747122 38.0 38.0 38.0 36.0 38.0 56-57 37.10929439000331 38.0 38.0 38.0 36.0 38.0 58-59 37.10088165353289 38.0 38.0 38.0 36.0 38.0 60-61 37.11251010176895 38.0 38.0 38.0 36.0 38.0 62-63 37.12318960442076 38.0 38.0 38.0 36.0 38.0 64-65 37.08707460666177 38.0 38.0 38.0 36.0 38.0 66-67 37.11897246381561 38.0 38.0 38.0 36.0 38.0 68-69 37.109495318888875 38.0 38.0 38.0 36.0 38.0 70-71 37.11667683851845 38.0 38.0 38.0 36.0 38.0 72-73 37.10302426535468 38.0 38.0 38.0 36.0 38.0 74-75 37.09968352462322 38.0 38.0 38.0 36.0 38.0 76-77 37.09079705577747 38.0 38.0 38.0 36.0 38.0 78-79 37.072621317539145 38.0 38.0 38.0 36.0 38.0 80-81 37.04320729106179 38.0 38.0 38.0 36.0 38.0 82-83 37.01385606509542 38.0 38.0 38.0 36.0 38.0 84-85 36.99561107088373 38.0 38.0 38.0 36.0 38.0 86-87 36.99525393990669 38.0 38.0 38.0 36.0 38.0 88-89 36.98134699734222 38.0 38.0 38.0 36.0 38.0 90-91 36.959664812465746 38.0 38.0 38.0 36.0 38.0 92-93 36.937979672916285 38.0 38.0 38.0 35.0 38.0 94-95 36.91571140634906 38.0 38.0 38.0 35.0 38.0 96-97 36.92138070543213 38.0 38.0 38.0 35.0 38.0 98-99 36.925911344739404 38.0 38.0 38.0 35.0 38.0 100 35.600184662115964 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 5.0 20 34.0 21 119.0 22 415.0 23 1348.0 24 3138.0 25 6667.0 26 11838.0 27 19575.0 28 30534.0 29 43952.0 30 60412.0 31 79776.0 32 104830.0 33 146307.0 34 229777.0 35 454009.0 36 1461087.0 37 4814622.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.65797789018252 21.21620465405994 13.207511548250928 23.918305907506607 2 15.373300902949197 20.961771111383374 41.757681294483824 21.90724669118361 3 18.40314065670297 27.291250543802313 29.77805902777452 24.527549771720192 4 12.818581962220527 17.9429806491229 39.03618784467507 30.2022495439815 5 13.460669935797897 37.77186877004014 35.62716586192551 13.14029543223645 6 29.621135566306933 38.24003999787371 19.010304353129595 13.128520082689764 7 26.123088240433383 32.6334377146949 24.1474566265249 17.09601741834681 8 23.834245593494874 37.77863055063523 21.478026154567342 16.90909770130256 9 25.951071220027405 16.764208141264174 21.571566351076736 35.71315428763169 10-11 24.345188497689012 26.906524207777068 29.159643229710277 19.58864406482365 12-13 25.026836235163753 24.52919596269479 29.294075461739233 21.14989234040223 14-15 22.262546684739142 25.66012719913524 26.724498413123904 25.352827703001708 16-17 21.855186225462937 28.616397759802005 27.531794762686275 21.996621252048786 18-19 21.918050700500384 27.971645242980237 29.00862120331041 21.101682853208974 20-21 22.718595865151563 27.223128596695982 28.76856011786729 21.289715420285162 22-23 22.52685515279698 27.08129651895465 28.599120049323407 21.79272827892496 24-25 22.217187329478158 27.248477982722015 28.73966993332115 21.794664754478678 26-27 22.08639135801171 27.370688803744336 28.714464200328628 21.828455637915326 28-29 22.095373196406577 27.372793208047092 28.76069363542414 21.77113996012219 30-31 22.33030476958903 27.286154024367143 28.631196177432084 21.752345028611742 32-33 22.128013612795115 27.428337843724925 28.573165582817943 21.87048296066202 34-35 22.281452428166407 27.399512042308977 28.60344994695482 21.715585582569798 36-37 22.29755298873278 27.30543387762455 28.532983420243564 21.86402971339911 38-39 22.121501034236058 27.48335711309761 28.64679443969877 21.748347412967558 40-41 22.295248836470087 27.310421829549213 28.591210519722697 21.803118814258006 42-43 22.203260910484023 27.407772113822293 28.363197456777193 22.025769518916487 44-45 22.210284937022134 27.513976281906704 28.29519447143883 21.980544309632332 46-47 22.317273680188187 27.5010254198963 28.087818011631942 22.09388288828357 48-49 22.31277055541971 27.546461384157002 28.044908803579027 22.09585925684426 50-51 22.278588679093364 27.653250498197153 28.00184931468715 22.066311508022334 52-53 22.406120675596334 27.57444760293882 27.90389444804051 22.11553727342433 54-55 22.41786360280044 27.55794549699836 27.86964417569698 22.15454672450422 56-57 22.36335520963026 27.641055806832064 27.86688226425535 22.128706719282327 58-59 22.328026981150785 27.61058024568948 27.925572454127455 22.13582031903228 60-61 22.38763212538072 27.646420047313736 27.921765684149868 22.044182143155677 62-63 22.394718022210316 27.676974728013437 27.937067778954 21.991239470822247 64-65 22.400223068492757 27.629140261922885 27.865309844190616 22.105326825393746 66-67 22.431137746638672 27.68479370641139 27.773844062897158 22.11022448405278 68-69 22.368568016761056 27.612643058746805 27.886461146849857 22.13232777764228 70-71 22.430380251849886 27.398023146201844 27.95962416264243 22.211972439305836 72-73 22.519978488064034 27.527291244270508 27.754922713114325 22.19780755455113 74-75 22.31913734048607 27.635582579500806 27.80006023441695 22.24521984559617 76-77 22.457369325012927 27.515477946788437 27.749358633833925 22.277794094364708 78-79 22.35694557494292 27.50035745979233 27.74865263893872 22.39404432632603 80-81 22.40769144674928 27.58765824830106 27.6868951751572 22.317755129792456 82-83 22.51297377181529 27.50579021667725 27.748559027292302 22.232676984215157 84-85 22.491916157421443 27.52673086426335 27.675711780970126 22.305641197345086 86-87 22.381757742479614 27.58195930679998 27.767776414640327 22.268506536080082 88-89 22.50167977538284 27.49009390506558 27.674580516307255 22.33364580324432 90-91 22.517087911387648 27.58574499250474 27.635590319054913 22.261576777052692 92-93 22.552381094788 27.567672496544184 27.631212741087342 22.248733667580474 94-95 22.427178585039716 27.514897440492263 27.72173272187154 22.336191252596482 96-97 22.588348180997965 27.602656452859627 27.72716908551472 22.08182628062769 98-99 23.6061732801872 29.55964066868939 27.92710254427192 18.90708350685149 100 30.176451797303205 40.616810697512804 29.206737505183987 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1066.0 1 1024.0 2 1557.0 3 2344.5 4 3065.5 5 4423.5 6 5642.0 7 6760.5 8 7828.5 9 8234.0 10 7893.0 11 7651.5 12 8519.5 13 10567.0 14 14349.5 15 18716.5 16 22094.0 17 24100.0 18 24260.5 19 23031.5 20 21764.0 21 21357.5 22 22866.0 23 27233.5 24 34891.0 25 45777.5 26 59687.5 27 75570.0 28 91839.5 29 109995.0 30 127284.0 31 143952.0 32 163957.5 33 184333.5 34 201690.0 35 219351.5 36 238939.0 37 254523.0 38 268754.5 39 280221.5 40 287561.0 41 295054.5 42 300162.0 43 304864.0 44 310606.0 45 315380.5 46 316726.5 47 315978.5 48 314696.0 49 311650.5 50 306445.0 51 298718.0 52 286856.0 53 272157.5 54 255525.5 55 236419.5 56 214366.5 57 190958.0 58 169006.5 59 145125.5 60 121899.0 61 100276.5 62 79727.0 63 61692.5 64 45818.5 65 33571.5 66 24596.0 67 18289.0 68 13541.0 69 9784.0 70 7070.0 71 4967.0 72 3358.0 73 2202.0 74 1433.0 75 896.0 76 580.5 77 390.5 78 255.5 79 171.0 80 111.5 81 70.0 82 44.0 83 26.5 84 18.5 85 14.0 86 10.0 87 8.5 88 6.5 89 4.0 90 3.0 91 1.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0019013323653498512 3 0.0026779329089434527 4 0.0 5 0.0 6 6.694832272358632E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.9415463331955949E-4 24-25 0.0011850604451127205 26-27 0.002892578280232314 28-29 0.001801635389316329 30-31 0.002493686348153204 32-33 0.0034662252290009396 34-35 0.0011113398151161612 36-37 1.352477745993048E-5 38-39 5.442628571895082E-5 40-41 1.3698053129953773E-5 42-43 5.998391190114597E-4 44-45 0.0 46-47 0.0 48-49 1.6980436838718113E-4 50-51 0.006202542785589802 52-53 0.0 54-55 0.0029824999096541996 56-57 0.049800621746115256 58-59 0.06137727650537014 60-61 0.039836781946672326 62-63 0.008796391353938749 64-65 0.0 66-67 0.0 68-69 6.369086380967057E-4 70-71 0.0031570359139536514 72-73 0.011224705911117476 74-75 0.005309329815808762 76-77 0.004571858057425618 78-79 0.004509037176273676 80-81 0.017536165437876974 82-83 0.05744717671255111 84-85 0.03773822519850969 86-87 0.010331163560167014 88-89 0.008837628713160524 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 31.0 20-21 89.0 22-23 271.0 24-25 440.0 26-27 1445.0 28-29 3862.0 30-31 14855.0 32-33 18374.0 34-35 25617.0 36-37 41616.0 38-39 49772.0 40-41 47886.0 42-43 52864.0 44-45 63533.0 46-47 64965.0 48-49 62806.0 50-51 58889.0 52-53 56041.0 54-55 61591.0 56-57 65642.0 58-59 65545.0 60-61 63709.0 62-63 60883.0 64-65 64445.0 66-67 68351.0 68-69 70592.0 70-71 69253.0 72-73 64795.0 74-75 65273.0 76-77 68306.0 78-79 71339.0 80-81 70806.0 82-83 66452.0 84-85 64546.0 86-87 66727.0 88-89 70160.0 90-91 71503.0 92-93 70024.0 94-95 77939.0 96-97 227687.0 98-99 1690843.0 100-101 3568680.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.00345651743353 #Duplication Level Percentage of deduplicated Percentage of total 1 90.26264632003979 77.62899577934024 2 6.873418181855602 11.822754434587107 3 1.624438708727794 4.191220315539202 4 0.5722979984972102 1.9687842411507623 5 0.2649455270179909 1.1393115556190148 6 0.13407461677863078 0.6918528284527522 7 0.08520908245056784 0.5129792932199474 8 0.04706781766720217 0.323839600808937 9 0.030136672236603556 0.23326721822527924 >10 0.10396769631107317 1.3458891807004076 >50 0.0014624773140577301 0.08409392085347216 >100 3.1042547835238746E-4 0.04381335446779279 >500 2.4475625144356598E-5 0.01319827703500477 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3389664544717262E-5 0.0 0.0 1.3389664544717262E-5 3 0.0 1.3389664544717262E-5 0.0 0.0 1.3389664544717262E-5 4 0.0 5.355865817886905E-5 0.0 0.0 2.6779329089434525E-5 5 0.0 8.033798726830357E-5 0.0 0.0 2.6779329089434525E-5 6 1.3389664544717262E-5 8.033798726830357E-5 0.0 0.0 2.6779329089434525E-5 7 1.3389664544717262E-5 8.033798726830357E-5 0.0 0.0 2.6779329089434525E-5 8 1.3389664544717262E-5 8.033798726830357E-5 0.0 0.0 4.0168993634151784E-5 9 1.3389664544717262E-5 1.2050698090245536E-4 0.0 1.3389664544717262E-5 4.0168993634151784E-5 10-11 1.3389664544717262E-5 1.2050698090245536E-4 0.0 1.3389664544717262E-5 4.0168993634151784E-5 12-13 1.3389664544717262E-5 1.2050698090245536E-4 0.0 1.3389664544717262E-5 4.0168993634151784E-5 14-15 1.3389664544717262E-5 2.0084496817075894E-4 0.0 1.3389664544717262E-5 4.0168993634151784E-5 16-17 2.6779329089434525E-5 2.0084496817075894E-4 0.0 1.3389664544717262E-5 5.355865817886905E-5 18-19 2.6779329089434525E-5 2.4770879407726935E-4 0.0 1.3389664544717262E-5 5.355865817886905E-5 20-21 2.6779329089434525E-5 2.9457261998377975E-4 0.0 1.3389664544717262E-5 5.355865817886905E-5 22-23 2.6779329089434525E-5 3.4143644589029016E-4 0.0 1.3389664544717262E-5 7.364315499594494E-5 24-25 2.6779329089434525E-5 4.016899363415179E-4 0.0 2.6779329089434525E-5 9.372765181302083E-5 26-27 2.6779329089434525E-5 4.552485945203869E-4 0.0 2.6779329089434525E-5 9.372765181302083E-5 28-29 2.6779329089434525E-5 4.6194342679274555E-4 0.0 1.6067597453660714E-4 9.372765181302083E-5 30-31 2.6779329089434525E-5 5.221969172439732E-4 0.0 9.97530008581436E-4 1.0042248408537947E-4 32-33 2.6779329089434525E-5 5.221969172439732E-4 0.0 0.0030059796902890254 1.071173163577381E-4 34-35 2.6779329089434525E-5 6.092297367846354E-4 0.0 0.005744166089683705 1.2050698090245536E-4 36-37 2.6779329089434525E-5 6.962625563252976E-4 0.0 0.010169450221712761 1.2050698090245536E-4 38-39 3.3474161361793154E-5 6.962625563252976E-4 0.0 0.01681741866816488 1.2050698090245536E-4 40-41 4.0168993634151784E-5 7.766005435936011E-4 0.0 0.023994278864133335 1.2050698090245536E-4 42-43 4.0168993634151784E-5 8.16769537227753E-4 0.0 0.03155274449962623 1.2050698090245536E-4 44-45 4.0168993634151784E-5 9.506661826749257E-4 0.0 0.03933213960010696 1.2050698090245536E-4 46-47 4.0168993634151784E-5 0.0010577834990326638 0.0 0.04733915899784788 1.2050698090245536E-4 48-49 4.0168993634151784E-5 0.0010577834990326638 0.0 0.0553461783955888 1.2050698090245536E-4 50-51 4.0168993634151784E-5 0.0011649008153904019 0.0 0.06386869987830134 1.2050698090245536E-4 52-53 4.0168993634151784E-5 0.0011715956476627603 0.0 0.07247155934828217 1.2050698090245536E-4 54-55 4.0168993634151784E-5 0.0012050698090245535 0.0 0.08009027847422631 1.2050698090245536E-4 56-57 4.0168993634151784E-5 0.0012452388026587054 0.0 0.08677172108204022 1.3389664544717262E-4 58-59 4.686382590651042E-5 0.00127201813174814 0.0 0.09378790530347206 1.6737080680896577E-4 60-61 5.355865817886905E-5 0.001285407796292857 0.0 0.10065010838263966 1.740656390813244E-4 62-63 6.694832272358631E-5 0.0012987974608375745 0.0 0.10707045253183159 1.740656390813244E-4 64-65 6.694832272358631E-5 0.001486252764463616 0.0 0.11292843077014539 1.740656390813244E-4 66-67 8.033798726830357E-5 0.0014929475967359745 0.0 0.11886005216345513 1.8076047135368302E-4 68-69 8.033798726830357E-5 0.0015398114226424851 0.0 0.12483184255039903 1.8745530362604165E-4 70-71 8.033798726830357E-5 0.0015532010871872023 0.0 0.13052244998190388 1.8745530362604165E-4 72-73 9.372765181302083E-5 0.001559895919459561 0.0 0.13481383746848574 2.0084496817075894E-4 74-75 9.372765181302083E-5 0.0016000649130937128 0.0 0.13814786394012035 2.0084496817075894E-4 76-77 1.0042248408537947E-4 0.0016804029003620164 0.0 0.14141494208903135 2.0753980044311757E-4 78-79 1.071173163577381E-4 0.0017138770617238096 0.0 0.14373804888753983 2.142346327154762E-4 80-81 1.071173163577381E-4 0.0017138770617238096 0.0 0.14452803909567813 2.2092946498783483E-4 82-83 1.071173163577381E-4 0.001720571893996168 0.0 0.1450502360129221 2.2762429726019346E-4 84-85 1.071173163577381E-4 0.0017406563908132441 0.0 0.1453247241360888 2.2762429726019346E-4 86-87 1.071173163577381E-4 0.0017540460553579613 0.0 0.14545862078153599 2.2762429726019346E-4 88 1.071173163577381E-4 0.0017808253844473958 0.0 0.14546531561380832 2.2762429726019346E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8400 0.0 49.08066 1 GTATCAA 15305 0.0 36.690178 1 TCAACGC 17825 0.0 30.790632 4 ATCAACG 18145 0.0 30.22472 3 CAACGCA 18400 0.0 29.828426 5 AACGCAG 18940 0.0 29.111935 6 TATCAAC 19080 0.0 29.076395 2 ACGCAGA 22600 0.0 24.32251 7 GTACATG 24310 0.0 23.951574 1 CGCAGAG 23410 0.0 23.390625 8 TACATGG 25025 0.0 22.861713 2 ACATGGG 24880 0.0 22.331827 3 CATGGGG 16485 0.0 20.058167 4 GCAGAGT 27685 0.0 19.9162 9 GTGGTAT 4310 0.0 19.0331 1 GAGTACT 14705 0.0 18.57552 12-13 TGGTATC 4250 0.0 17.908892 2 CAGAGTA 27100 0.0 17.67804 10-11 AGAGTAC 24935 0.0 17.21195 10-11 GTACTTT 17000 0.0 16.04322 14-15 >>END_MODULE